Cucsa.088670 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.088670
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transposon TX1 uncharacterized
Location	scaffold00888 : 936677 .. 938446 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAATTTCTTGGAATACAAGGGGACTGAAAGATCCCACCAAGTGCTTAGCCCTCAAGAAATTCATAAAGAATCATCATCCAGATGTGGTTATGATTCAAGATCGAAAATGGAAAACTTTGATGCAGTATTTTGTTAAGTCAATATGGAATTCCAAAGACAGCGAATGGGAGTTTGTGGAATCTTTAGGTGCATCAGGAGGTATCCTCACAATGTGGGACAAGAGCAAAATTACTGTGGTTGAGAATATCAAAGGGAGGTTTTCTCTCTCAATTAAAGGCGATACGATGTGCAAGAAACGATGTTGGATTACCAATGTATATGGTTCGTGTGGTTACTGGTTACAGAGAAAAAAACTCTTTGGCCAGAGCTCTCATCCATTTTAGAATGTGGTGTTGAGGCTTGGTGTTTGGGAGGAGACTTCAACGTTACTCGCATGGCAGATGAGAGACCTCCCATTGGTAGAAACACAAGAGGAATGAGGCTTTTTAATAACTTCATTGATTCAGCTAACATCATGGAACTTCCTCTTCAAAATGGCAGATTCACATGGTCTAGAGAGGGAGGATTAGCCTCAAGGTCCTTGCTGGATAGATTTTTTATTTATAACAAATGGGAAGAAGTGTTTGAGAACAGAGTGTCCGGTAAAGCATGAATATTCTCTAATCATTTTCCTTTACTATTGGAGTCGGGCGATTCTATGGGGGCCTTATCCATTCAGGTTTTGCAGTAGCTGGCTGCTGGTCAAAGAATATAATCTAGTCATTGAAGGAGCTCTGAACAGTCCTCTTGGCAATGGTTGGGCAGGATTCATATTACATGAACAACTGCACAAAGTTAAAATAACAGTAAAGGAGTAGCACACCTTTTTTCAGGTCTCCTTTAAGCAGAAAGAAGACAGGTTGTTGAAGGAATTCAAAGCCTGTGACGTGATTGCAGAATGGTTTGGTTTAAATGATGAAAATTGGCCCGTAAATCTGCCATTCAAGCAGATTTATTAAGTGCTTACAGAGTTGAATAGAGAAATTGCATCCAGAAAAGTAAACTAAACTGATTGGCAGTAGGGGATCAGAACACGGGCTTCTTTCACATATATCTTAATGTAAAAAAAGGAGATATTTAATCACAAAATTGGTGGATGAGCAAGGGATGGCAACAAAGTCATTTCGAGATATTGAGAGGCTTTTATTGGGATTTTTTTTATGGCTTCTATAAAAGGATTCCAGGGGACAGATGCATCCCTTATATTACAGACTGGCCTTGTGTCACTCCCAATCAGAATTTGCTACTTGTCACTAGATTTTTTGGAGGAGGAAATATTTAAGGCAGTCAAGGCACTTGGTGGAAATAAAGCTCCCAGATCGGATGGTTTCATCAAGGAGTTCCTCGTGAAGCACGGGCTGAAATCAAAAGGAAGCTTCAAAAATTTGTTTGATGATTTTCACATAAATGTAAAGCTCAATGCTTGCATTCAAGAAAACTTCATTTGTTCAATACAAGGGAAAGAGGATGTGGTTCACGCAAAGGATTTTAGACCCATTTGCCTAACCACCCTCACATGCAAGGCGATAGCTAAATTGTTAGTGGATCGTGTAAAACTGGTTTTGGATTCAATCATAAGCCCATTTCAAAGCGCATTTACTGAAGGAAGGAAGATATTAGACCTGGTTCTAATAGCTAACGAGGCAATTGAAGTCTATCGTGCTAAAAAGAAGAGATGGATTTTAAAATTAGATCTTGAAAAAGCCTTTGATGGAGTGGATTGA

mRNA sequence

atgaagataatttcttggaatacaaggggactgaaagatcccaccaagtgcttagccctcaagaaattcataaagaatcatcatccagatgtggttatgattcaagatcgaaaatggaaaactttgatgcagtattttgttaagtcaatatggaattccaaagacagcgaatgggagtttgtggaatctttaggtgcatcaggaggtatcctcacaatgtgggacaagagcaaaattactgtggttgagaatatcaaagggaggttttctctctcaattaaaggcgatacgatgtgcaagaaacgatgttggattaccaataaaaaaactctttggccagagctctcatccattttagaatgtggtgttgaggcttggtgtttgggaggagacttcaacgttactcgcatggcagatgagagacctcccattggtagaaacacaagaggaatgaggctttttaataacttcattgattcagctaacatcatggaacttcctcttcaaaatggcagattcacatggtctagagagggaggattagcctcaaggtccttgctggatagattttttatttataacaaatgggaagaagtgtttgagaacagagttcgggcgattctatgggggccttatccattcaggttttgcagtagctggctgctggtcaaagaatataatctagtcattgaaggagctctgaacagtcctcttggcaatggttgggcaggattcatattacatgaacaactgcacaaagttaaaataacagtaaaggaaatttgctacttgtcactagattttttggaggaggaaatatttaaggcagtcaaggcacttggtggaaataaagctcccagatcggatggtttcatcaaggagttcctcgtgaagcacgggctgaaatcaaaaggaagcttcaaaaatttgtttgatgattttcacataaatgtaaagctcaatgcttgcattcaagaaaacttcatttgttcaatacaagggaaagaggatgtggttcacgcaaaggattttagacccatttgcctaaccaccctcacatgcaaggcgatagctaaattgttagtggatcgtgtaaaactggttttggattcaatcataagcccatttcaaagcgcatttactgaaggaaggaagatattagacctggttctaatagctaacgaggcaattgaagtctatcgtgctaaaaagaagagatggattttaaaattagatcttgaaaaagcctttgatggagtggattga

Coding sequence (CDS)

ATGAAGATAATTTCTTGGAATACAAGGGGACTGAAAGATCCCACCAAGTGCTTAGCCCTCAAGAAATTCATAAAGAATCATCATCCAGATGTGGTTATGATTCAAGATCGAAAATGGAAAACTTTGATGCAGTATTTTGTTAAGTCAATATGGAATTCCAAAGACAGCGAATGGGAGTTTGTGGAATCTTTAGGTGCATCAGGAGGTATCCTCACAATGTGGGACAAGAGCAAAATTACTGTGGTTGAGAATATCAAAGGGAGGTTTTCTCTCTCAATTAAAGGCGATACGATGTGCAAGAAACGATGTTGGATTACCAATAAAAAAACTCTTTGGCCAGAGCTCTCATCCATTTTAGAATGTGGTGTTGAGGCTTGGTGTTTGGGAGGAGACTTCAACGTTACTCGCATGGCAGATGAGAGACCTCCCATTGGTAGAAACACAAGAGGAATGAGGCTTTTTAATAACTTCATTGATTCAGCTAACATCATGGAACTTCCTCTTCAAAATGGCAGATTCACATGGTCTAGAGAGGGAGGATTAGCCTCAAGGTCCTTGCTGGATAGATTTTTTATTTATAACAAATGGGAAGAAGTGTTTGAGAACAGAGTTCGGGCGATTCTATGGGGGCCTTATCCATTCAGGTTTTGCAGTAGCTGGCTGCTGGTCAAAGAATATAATCTAGTCATTGAAGGAGCTCTGAACAGTCCTCTTGGCAATGGTTGGGCAGGATTCATATTACATGAACAACTGCACAAAGTTAAAATAACAGTAAAGGAAATTTGCTACTTGTCACTAGATTTTTTGGAGGAGGAAATATTTAAGGCAGTCAAGGCACTTGGTGGAAATAAAGCTCCCAGATCGGATGGTTTCATCAAGGAGTTCCTCGTGAAGCACGGGCTGAAATCAAAAGGAAGCTTCAAAAATTTGTTTGATGATTTTCACATAAATGTAAAGCTCAATGCTTGCATTCAAGAAAACTTCATTTGTTCAATACAAGGGAAAGAGGATGTGGTTCACGCAAAGGATTTTAGACCCATTTGCCTAACCACCCTCACATGCAAGGCGATAGCTAAATTGTTAGTGGATCGTGTAAAACTGGTTTTGGATTCAATCATAAGCCCATTTCAAAGCGCATTTACTGAAGGAAGGAAGATATTAGACCTGGTTCTAATAGCTAACGAGGCAATTGAAGTCTATCGTGCTAAAAAGAAGAGATGGATTTTAAAATTAGATCTTGAAAAAGCCTTTGATGGAGTGGATTGA

Protein sequence

MKIISWNTRGLKDPTKCLALKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEFVESLGASGGILTMWDKSKITVVENIKGRFSLSIKGDTMCKKRCWITNKKTLWPELSSILECGVEAWCLGGDFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNGRFTWSREGGLASRSLLDRFFIYNKWEEVFENRVRAILWGPYPFRFCSSWLLVKEYNLVIEGALNSPLGNGWAGFILHEQLHKVKITVKEICYLSLDFLEEEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFICSIQGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLVLIANEAIEVYRAKKKRWILKLDLEKAFDGVD*

Homology

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BLAST of Cucsa.088670 vs. Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-07
Identity = 44/152 (28.95%), Postives = 69/152 (45.39%), Query Frame = 1


Query: 271 EEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFIC 330
           +E+ +A++ +  NK+P  DG   EF           F  +  +     +L    +   + 
Sbjct: 452 DELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLS 511

Query: 331 SIQGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLV 390
            +  K D+   K++RP+ L +   K +AK +  R+K VL  +I P QS    GR I D V
Sbjct: 512 LLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNV 571

Query: 391 LIANEAIE-VYRAKKKRWILKLDLEKAFDGVD 422
            +  + +    R       L LD EKAFD VD
Sbjct: 572 FLIRDLLHFARRTGLSLAFLSLDQEKAFDRVD 603

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BLAST of Cucsa.088670 vs. Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-07
Identity = 47/180 (26.11%), Postives = 77/180 (42.78%), Query Frame = 1


Query: 249 EQLHKVKITVKEICYLSLDFLEEEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFK 308
           E  H  +++ KE+  L+      EI   ++ L   K+P  DGF  EF      +      
Sbjct: 433 EACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILL 492

Query: 309 NLFDDFHINVKL-NACIQENFICSIQGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKL 368
           NLF +      L N   + N     +  +D    +++RPI L  +  K + K+L +R++ 
Sbjct: 493 NLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQ 552

Query: 369 VLDSIISPFQSAFTEG-------RKILDLVLIANEAIEVYRAKKKRWILKLDLEKAFDGV 421
            +  II   Q  F  G       RK ++++   N+        K   IL +D EKAFD +
Sbjct: 553 HIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKL-----KNKDHMILSIDAEKAFDNI 607

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BLAST of Cucsa.088670 vs. Swiss-Prot
Match: LORF2_MOUSE (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 46/174 (26.44%), Postives = 77/174 (44.25%), Query Frame = 1


Query: 255 KITVKEICYLSLDFLEEEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFKNLFDDF 314
           K+   ++ +L+     +EI   + +L   K+P  DGF  EF              LF   
Sbjct: 447 KLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKI 506

Query: 315 HINVKLNACIQENFICSI-QGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKLVLDSII 374
            +   L     E  I  I + ++D    ++FRPI L  +  K + K+L +R++  + +II
Sbjct: 507 EVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAII 566

Query: 375 SPFQSAFTEG-------RKILDLVLIANEAIEVYRAKKKRWILKLDLEKAFDGV 421
            P Q  F  G       RK ++++   N+  +     K   I+ LD EKAFD +
Sbjct: 567 HPDQVGFIPGMQGWFNIRKSINVIHYINKLKD-----KNHMIISLDAEKAFDKI 615

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BLAST of Cucsa.088670 vs. TrEMBL
Match: A5BLC3_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_015752 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.0e-55
Identity = 158/463 (34.13%), Postives = 223/463 (48.16%), Query Frame = 1


Query: 1    MKIISWNTRGLKDPTKCLALKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEF 60
            MKIISWNTRGL    K   +K F+++  P+VVMIQ+ K +   + FV S+W + + +W  
Sbjct: 819  MKIISWNTRGLGSKXKRRVVKDFLRSEKPBVVMIQETKKEECDRRFVGSVWXAXNKDWAA 878

Query: 61   VESLGASGGILTMWDKSKITVVENIKGRFSLSIKGDTMCKKRCWITN---------KKTL 120
            + + GAS GIL +WD  K+     +   FS+SIK      +  W++          KK  
Sbjct: 879  LXASGASXGILIIWDSKKLRREXVVLXSFSVSIKFAMDGCESLWLSAVYGPNNSALKKDF 938

Query: 121  WPELSSILECGVEAWCLGGDFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNG 180
            W ELS I+      WC+GGDFNV R + E+    R T  M+ F++FI    +++ PL++ 
Sbjct: 939  WVELSDIVGLSYPRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFIRDCELIDSPLRSA 998

Query: 181  RFTWS--REGGLASRSLLDRFFIYNKWEEVFENRVRAIL------------------WGP 240
             +TWS  +E  +  R  LDRF   N+WE+VF   ++ +L                  WGP
Sbjct: 999  SYTWSNMQENPVCKR--LDRFLYSNEWEQVFPQSLQGVLPRWTSXHWPIVLETNPFKWGP 1058

Query: 241  YPFRFC------SSWLLVKEYNLVIEGALN-------SPLGNGWAGFILHEQLHKVKITV 300
             PFR         S L++     + E  L        SP    W      E L    I  
Sbjct: 1059 TPFRKFIKELENESGLMLNNPESIKEEILRYFEKLYASPSREPWR----VEGLDWSPIFG 1118

Query: 301  KEICYLSLDFLEEEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFKNLFDDFHINV 360
            +    L   F EEEIFKA+  +  +KAP  DGF            K     +F +FH + 
Sbjct: 1119 ESASRLESPFTEEEIFKAIFQMDRDKAPGPDGFTIAVFQDCWEVIKEDLVRVFAEFHRSG 1178

Query: 361  KLNACIQENFICSIQGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKLVLDSIISPFQS 420
             +N     +FI  +  K       DFRPI L T   K IAK+L  R++ VL   I   Q 
Sbjct: 1179 IINXSTNASFIVLLPKKSMSRRISDFRPISLITXLYKIIAKVLAXRLRGVLHETIHSTQG 1238

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BLAST of Cucsa.088670 vs. TrEMBL
Match: A5BN31_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042821 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.4e-46
Identity = 139/452 (30.75%), Postives = 210/452 (46.46%), Query Frame = 1


Query: 35  QDRKWKTLMQYFVKSIWNSKDSEWEFVESLGASGGILTMWDKSKITVVENIKGRFSLSIK 94
           Q+ K ++L +  V+S+ + + S W  ++++G++GG+L  WDK  + V+E   G+ S+S +
Sbjct: 321 QETKIQSLSEGLVRSLGSGRWSNWVALDAVGSAGGMLVCWDKRSLEVMETEVGKSSVSCR 380

Query: 95  GDTMCKKRCWI----------TNKKTLWPELSSILECGVEAWCLGGDFNVTRMADERPPI 154
              +     WI           +++ LW EL +I     + WCLGGDFNV     ER   
Sbjct: 381 IRNVENGLTWIFTGVYGPFSKEDRECLWEELGAIRGLWEDPWCLGGDFNVILSQRERNRQ 440

Query: 155 GRNTRGMRLFNNFIDSANIMELPLQNGRFTWSREGGLASRSLLDRFFIYNKWEEVFENRV 214
           GR T  MR+F   +D   +++LP+Q G FTWS      S + LDRF +  +W E+F    
Sbjct: 441 GRLTGAMRIFAQTVDELELLDLPMQEGAFTWSGGRNNQSWARLDRFLVTQQWLEMFSGIA 500

Query: 215 RAILW------------------GPYPFRFCSSWLLVKEYNLVIEGALNSPLGNGWAGFI 274
           +  L                   GP PFRF + WL V  +  ++ G        G   F 
Sbjct: 501 QCRLQRPTSDHFPILLMGGGLRKGPTPFRFENMWLKVDGFKGLLRGWWQGIEVRGRVSFR 560

Query: 275 LHEQL----HKVKITVKEI----------------------CYLSLDFLEEEIFKAVKAL 334
           L  +L     K+K+  +E+                         SL   E E  K  K  
Sbjct: 561 LASKLKFLKQKIKVWNREVFGRLEVNKNSALQQVEYWNGVESERSLSIAETEQKKEAKDA 620

Query: 335 ----------GGNKAPRSDGFIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFIC 394
                      G+KAP  DGF   F  +     K    +LF +F  +   + C+   F+ 
Sbjct: 621 FHKWVLLEEMRGDKAPGPDGFTMAFWQECWEFVKEEVVDLFKEFFEHGSFSKCLNTTFLV 680

Query: 395 SIQGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLV 422
            I  K       DFRPI L     K +AK+L +R+K VLD ++S  Q+AF  GR+ILD  
Sbjct: 681 LIPKKGGAEDLGDFRPISLLGGLYKLLAKVLANRLKKVLDRVVSVDQNAFVRGRQILDAS 740

[Close]

BLAST of Cucsa.088670 vs. TrEMBL
Match: A5C364_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035898 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 137/431 (31.79%), Postives = 198/431 (45.94%), Query Frame = 1


Query: 20  LKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEFVESLGASGGILTMWDKSKI 79
           +K F +   PDVVMIQ+ K     + FV S+W +++ +W  + + GASGGIL +WD  K+
Sbjct: 528 VKDFXRLEKPDVVMIQETKKAECDRRFVXSVWTTRNKDWAALPASGASGGILIIWDSKKL 587

Query: 80  TVVENIKGRFSLSIKGDTMCKKRCWITN---------KKTLWPELSSILECGVEAWCLGG 139
              E + G FS+SIK      +  W++          +K  W ELS I       WC+GG
Sbjct: 588 RREEVVLGSFSVSIKFALDGCEPFWLSAVYGPSNSALRKDFWVELSDIFGLSSXRWCVGG 647

Query: 140 DFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNGRFTWSREGGLASRSLLDRF 199
           DFNV   + ++    R T  M+ F++FI    +++ PL+   FTWS          LDRF
Sbjct: 648 DFNVIXRSSKKLGGSRLTPSMKDFDDFIRDCELIDSPLRXAPFTWSNLQEHPVCKRLDRF 707

Query: 200 FIYNKWEEVFENRVRAIL------------------WGPYPFRFCSSWLLVKEYN----L 259
              N+WE++F   ++ +L                  WGP PF          E+      
Sbjct: 708 LYSNEWEQLFPQSLQEVLLRWTSDHWPIVLETNPFKWGPTPF---------SEHQRGDIK 767

Query: 260 VIEGALNSPLGNGWAGFILHEQLHKVKITVKEICYLSLDFLEEEIFKAVKALGGNKAPRS 319
           V E    SP G  W      E L    I+ +    L   F EEEI KA+  L  +K P  
Sbjct: 768 VFEKLYASPSGEPWR----VEGLDWSPISGESASRLESLFSEEEISKAIFXLDRDKXPGP 827

Query: 320 DGFIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFICSIQGKEDVVHAKDFRPIC 379
           D F            K     +F +FH +  +N     +FI  +  K       D+RPI 
Sbjct: 828 DDFTIAVFQDCWEVIKEDLVRVFAEFHRSGIINQSTNASFIVLLPKKSMSKRISDYRPIS 887

Query: 380 LTTLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLVLIANEAI-EVYRAKKKRW 419
           L     K I K+L   ++ VL   I   Q AF +GR+ILD+VLIANE + E  R+ ++  
Sbjct: 888 LINSLYKIITKVLAGSLRGVLYETIHSTQGAFVQGRQILDVVLIANEIVDEKRRSGEEGV 945

[Close]

BLAST of Cucsa.088670 vs. TrEMBL
Match: A5CAA2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030956 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 112/340 (32.94%), Postives = 166/340 (48.82%), Query Frame = 1


Query: 1    MKIISWNTRGLKDPTKCLALKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEF 60
            MKIISWNTRGL    K   +K F+++  PDVVM Q+ K +   + FV S+W +++ +W  
Sbjct: 830  MKIISWNTRGLGSKKKRRVVKDFLRSEKPDVVMFQETKKEECDRRFVGSVWTARNKDWAA 889

Query: 61   VESLGASGGILTMWDKSKITVVENIKGRFSLSIKGDTMCKKRCWITN---------KKTL 120
            + + GASGGIL +WD  K++  E + G FS+SIK      +  W++          +K L
Sbjct: 890  LPACGASGGILIIWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDL 949

Query: 121  WPELSSILECGVEAWCLGGDFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNG 180
            W ELS I       WC+GGDFNV R + E+    R T  M+ F++FI    +++LPL++ 
Sbjct: 950  WVELSDIAGLASPRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSA 1009

Query: 181  RFTWSREGGLASRSLLDRFFIYNKWEEVFENRVRAIL------------------WGPYP 240
             FTWS          LDRF   N+WE+ F   ++ +L                  WGP P
Sbjct: 1010 SFTWSNMQVNPVCKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTP 1069

Query: 241  FRFCSSWLLVKEYNLVIEGALNSPLGNGWAGFILHEQLHKVKITVK---EICYLSLDFLE 300
            FRF + WL    +            GNGW G     +L  VK  +K   +  +  L   +
Sbjct: 1070 FRFENMWLQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRK 1129

Query: 301  EEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFKNL 311
            E+I  A+  +  +   +  G   E L +  +K KG  + L
Sbjct: 1130 EDILSAL--VNFDSLEQEGGLSHELLAQRAIK-KGELEEL 1166

[Close]

BLAST of Cucsa.088670 vs. TrEMBL
Match: A5CAA2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030956 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 69/191 (36.13%), Postives = 92/191 (48.17%), Query Frame = 1


Query: 231  EGALNSPLGNGWAGFILHEQLHKVKITVKEICYLSLDFLEEEIFKAVKALGGNKAPRSDG 290
            E    SP G  W      E L    I+ +    L   F EEEI KA+  +  +KAP  DG
Sbjct: 1232 EKLYTSPSGESWRV----EGLDWSPISGESAVRLESPFTEEEICKAIFQMDRDKAPGPDG 1291

Query: 291  FIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFICSIQGKEDVVHAKDFRPICLT 350
            F            K     +F +FH +  +N     +FI  +  K       DFRPI L 
Sbjct: 1292 FTIAVFQDCWEVIKEDLVKVFTEFHRSGIINQSTNASFIVLLPKKSMSRRISDFRPISLI 1351

Query: 351  TLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLVLIANEAI-EVYRAKKKRWIL 410
            T   K IAK+L  R++ VL   I   Q AF +GR+ILD VLIANE + E  R+ ++  + 
Sbjct: 1352 TSLYKIIAKVLAGRIREVLHETIHSTQGAFVQGRQILDAVLIANEIVDEKRRSGEEGVVF 1411

Query: 411  KLDLEKAFDGV 421
            K+D EKA+D V
Sbjct: 1412 KIDFEKAYDHV 1418

HSP 2 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 113/334 (33.83%), Postives = 165/334 (49.40%), Query Frame = 1


Query: 1    MKIISWNTRGLKDPTKCLALKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEF 60
            MKIISWNTRGL    K   +K F+++  PDVVMIQ+ K K   + FV S+W +++ +W  
Sbjct: 754  MKIISWNTRGLGSKKKRRVVKXFLRSEKPDVVMIQETK-KECDRRFVGSVWTARNKDWAA 813

Query: 61   VESLGASGGILTMWDKSKITVVENIKGRFSLSIKGDTMCKKRCWI---------TNKKTL 120
            + + GASGGIL +W+  K+   E + G FS+SIK      +  W+         T +K  
Sbjct: 814  LPASGASGGILIIWEAKKLCREEVVLGSFSVSIKFALDGCESLWLSAVYGPNNSTLRKDF 873

Query: 121  WPELSSILECGVEAWCLGGDFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNG 180
            W ELS I+      WC+GGDFNV R + ++    R T  M+ F++FI    +++LPL++ 
Sbjct: 874  WVELSDIVGLAYPRWCVGGDFNVIRRSSKKLGGSRLTPSMKDFDDFIRDCELIDLPLRSA 933

Query: 181  RFTWS--REGGLASRSLLDRFFIYNKWEEVFENRVRAIL------------------WGP 240
             FTWS  +E  +  R  LD F   N+WE+VF   ++ +L                  WGP
Sbjct: 934  SFTWSNMQENPVCKR--LDCFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKWGP 993

Query: 241  YPFRFCSSWLLVKEYNLVIEGALNSPLGNGWAGFILHEQLHKVKITVKEICYLSLDFLEE 300
             PFRF + WL    +            GNGW G     +L  VK  +KE    S   L +
Sbjct: 994  MPFRFENMWLQHPNFKESFGRWWREFQGNGWEGHKFMRKLQFVKDKLKEWNKASFGELSK 1053

Query: 301  EIFKAVKALGG-NKAPRSDGFIKEFLVKHGLKSK 305
                 +  L   +   +  G   EFLV+  L+ +
Sbjct: 1054 RKKDILSNLANFDSLEQEGGLSHEFLVQRALRKR 1084

[Close]

BLAST of Cucsa.088670 vs. TAIR10
Match: AT4G20520.1 (AT4G20520.1 RNA binding;RNA-directed DNA polymerases)

HSP 1 Score: 48.9 bits (115), Expect = 8.9e-06
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 1


Query: 361 LVDRVKLVLDSIISPFQSAFTEGRKILDLVLIANEAIEVYRAKK--KRW-ILKLDLEKAF 420
           +V+R+K ++ ++I P Q++F  GR   D ++   EA+   R KK  K W +LKLDLEKA+
Sbjct: 1   MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

[Close]

BLAST of Cucsa.088670 vs. NCBI nr
Match: gi|147812154|emb|CAN60035.1| (hypothetical protein VITISV_015752 [Vitis vinifera])

HSP 1 Score: 223.8 bits (569), Expect = 5.7e-55
Identity = 158/463 (34.13%), Postives = 223/463 (48.16%), Query Frame = 1


Query: 1    MKIISWNTRGLKDPTKCLALKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEF 60
            MKIISWNTRGL    K   +K F+++  P+VVMIQ+ K +   + FV S+W + + +W  
Sbjct: 819  MKIISWNTRGLGSKXKRRVVKDFLRSEKPBVVMIQETKKEECDRRFVGSVWXAXNKDWAA 878

Query: 61   VESLGASGGILTMWDKSKITVVENIKGRFSLSIKGDTMCKKRCWITN---------KKTL 120
            + + GAS GIL +WD  K+     +   FS+SIK      +  W++          KK  
Sbjct: 879  LXASGASXGILIIWDSKKLRREXVVLXSFSVSIKFAMDGCESLWLSAVYGPNNSALKKDF 938

Query: 121  WPELSSILECGVEAWCLGGDFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNG 180
            W ELS I+      WC+GGDFNV R + E+    R T  M+ F++FI    +++ PL++ 
Sbjct: 939  WVELSDIVGLSYPRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFIRDCELIDSPLRSA 998

Query: 181  RFTWS--REGGLASRSLLDRFFIYNKWEEVFENRVRAIL------------------WGP 240
             +TWS  +E  +  R  LDRF   N+WE+VF   ++ +L                  WGP
Sbjct: 999  SYTWSNMQENPVCKR--LDRFLYSNEWEQVFPQSLQGVLPRWTSXHWPIVLETNPFKWGP 1058

Query: 241  YPFRFC------SSWLLVKEYNLVIEGALN-------SPLGNGWAGFILHEQLHKVKITV 300
             PFR         S L++     + E  L        SP    W      E L    I  
Sbjct: 1059 TPFRKFIKELENESGLMLNNPESIKEEILRYFEKLYASPSREPWR----VEGLDWSPIFG 1118

Query: 301  KEICYLSLDFLEEEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFKNLFDDFHINV 360
            +    L   F EEEIFKA+  +  +KAP  DGF            K     +F +FH + 
Sbjct: 1119 ESASRLESPFTEEEIFKAIFQMDRDKAPGPDGFTIAVFQDCWEVIKEDLVRVFAEFHRSG 1178

Query: 361  KLNACIQENFICSIQGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKLVLDSIISPFQS 420
             +N     +FI  +  K       DFRPI L T   K IAK+L  R++ VL   I   Q 
Sbjct: 1179 IINXSTNASFIVLLPKKSMSRRISDFRPISLITXLYKIIAKVLAXRLRGVLHETIHSTQG 1238

[Close]

BLAST of Cucsa.088670 vs. NCBI nr
Match: gi|147775294|emb|CAN61586.1| (hypothetical protein VITISV_042821 [Vitis vinifera])

HSP 1 Score: 193.7 bits (491), Expect = 6.3e-46
Identity = 139/452 (30.75%), Postives = 210/452 (46.46%), Query Frame = 1


Query: 35  QDRKWKTLMQYFVKSIWNSKDSEWEFVESLGASGGILTMWDKSKITVVENIKGRFSLSIK 94
           Q+ K ++L +  V+S+ + + S W  ++++G++GG+L  WDK  + V+E   G+ S+S +
Sbjct: 321 QETKIQSLSEGLVRSLGSGRWSNWVALDAVGSAGGMLVCWDKRSLEVMETEVGKSSVSCR 380

Query: 95  GDTMCKKRCWI----------TNKKTLWPELSSILECGVEAWCLGGDFNVTRMADERPPI 154
              +     WI           +++ LW EL +I     + WCLGGDFNV     ER   
Sbjct: 381 IRNVENGLTWIFTGVYGPFSKEDRECLWEELGAIRGLWEDPWCLGGDFNVILSQRERNRQ 440

Query: 155 GRNTRGMRLFNNFIDSANIMELPLQNGRFTWSREGGLASRSLLDRFFIYNKWEEVFENRV 214
           GR T  MR+F   +D   +++LP+Q G FTWS      S + LDRF +  +W E+F    
Sbjct: 441 GRLTGAMRIFAQTVDELELLDLPMQEGAFTWSGGRNNQSWARLDRFLVTQQWLEMFSGIA 500

Query: 215 RAILW------------------GPYPFRFCSSWLLVKEYNLVIEGALNSPLGNGWAGFI 274
           +  L                   GP PFRF + WL V  +  ++ G        G   F 
Sbjct: 501 QCRLQRPTSDHFPILLMGGGLRKGPTPFRFENMWLKVDGFKGLLRGWWQGIEVRGRVSFR 560

Query: 275 LHEQL----HKVKITVKEI----------------------CYLSLDFLEEEIFKAVKAL 334
           L  +L     K+K+  +E+                         SL   E E  K  K  
Sbjct: 561 LASKLKFLKQKIKVWNREVFGRLEVNKNSALQQVEYWNGVESERSLSIAETEQKKEAKDA 620

Query: 335 ----------GGNKAPRSDGFIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFIC 394
                      G+KAP  DGF   F  +     K    +LF +F  +   + C+   F+ 
Sbjct: 621 FHKWVLLEEMRGDKAPGPDGFTMAFWQECWEFVKEEVVDLFKEFFEHGSFSKCLNTTFLV 680

Query: 395 SIQGKEDVVHAKDFRPICLTTLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLV 422
            I  K       DFRPI L     K +AK+L +R+K VLD ++S  Q+AF  GR+ILD  
Sbjct: 681 LIPKKGGAEDLGDFRPISLLGGLYKLLAKVLANRLKKVLDRVVSVDQNAFVRGRQILDAS 740

[Close]

BLAST of Cucsa.088670 vs. NCBI nr
Match: gi|147855269|emb|CAN79624.1| (hypothetical protein VITISV_035898 [Vitis vinifera])

HSP 1 Score: 189.1 bits (479), Expect = 1.6e-44
Identity = 137/431 (31.79%), Postives = 198/431 (45.94%), Query Frame = 1


Query: 20  LKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEFVESLGASGGILTMWDKSKI 79
           +K F +   PDVVMIQ+ K     + FV S+W +++ +W  + + GASGGIL +WD  K+
Sbjct: 528 VKDFXRLEKPDVVMIQETKKAECDRRFVXSVWTTRNKDWAALPASGASGGILIIWDSKKL 587

Query: 80  TVVENIKGRFSLSIKGDTMCKKRCWITN---------KKTLWPELSSILECGVEAWCLGG 139
              E + G FS+SIK      +  W++          +K  W ELS I       WC+GG
Sbjct: 588 RREEVVLGSFSVSIKFALDGCEPFWLSAVYGPSNSALRKDFWVELSDIFGLSSXRWCVGG 647

Query: 140 DFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNGRFTWSREGGLASRSLLDRF 199
           DFNV   + ++    R T  M+ F++FI    +++ PL+   FTWS          LDRF
Sbjct: 648 DFNVIXRSSKKLGGSRLTPSMKDFDDFIRDCELIDSPLRXAPFTWSNLQEHPVCKRLDRF 707

Query: 200 FIYNKWEEVFENRVRAIL------------------WGPYPFRFCSSWLLVKEYN----L 259
              N+WE++F   ++ +L                  WGP PF          E+      
Sbjct: 708 LYSNEWEQLFPQSLQEVLLRWTSDHWPIVLETNPFKWGPTPF---------SEHQRGDIK 767

Query: 260 VIEGALNSPLGNGWAGFILHEQLHKVKITVKEICYLSLDFLEEEIFKAVKALGGNKAPRS 319
           V E    SP G  W      E L    I+ +    L   F EEEI KA+  L  +K P  
Sbjct: 768 VFEKLYASPSGEPWR----VEGLDWSPISGESASRLESLFSEEEISKAIFXLDRDKXPGP 827

Query: 320 DGFIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFICSIQGKEDVVHAKDFRPIC 379
           D F            K     +F +FH +  +N     +FI  +  K       D+RPI 
Sbjct: 828 DDFTIAVFQDCWEVIKEDLVRVFAEFHRSGIINQSTNASFIVLLPKKSMSKRISDYRPIS 887

Query: 380 LTTLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLVLIANEAI-EVYRAKKKRW 419
           L     K I K+L   ++ VL   I   Q AF +GR+ILD+VLIANE + E  R+ ++  
Sbjct: 888 LINSLYKIITKVLAGSLRGVLYETIHSTQGAFVQGRQILDVVLIANEIVDEKRRSGEEGV 945

[Close]

BLAST of Cucsa.088670 vs. NCBI nr
Match: gi|147803328|emb|CAN68838.1| (hypothetical protein VITISV_030956 [Vitis vinifera])

HSP 1 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 112/340 (32.94%), Postives = 166/340 (48.82%), Query Frame = 1


Query: 1    MKIISWNTRGLKDPTKCLALKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEF 60
            MKIISWNTRGL    K   +K F+++  PDVVM Q+ K +   + FV S+W +++ +W  
Sbjct: 830  MKIISWNTRGLGSKKKRRVVKDFLRSEKPDVVMFQETKKEECDRRFVGSVWTARNKDWAA 889

Query: 61   VESLGASGGILTMWDKSKITVVENIKGRFSLSIKGDTMCKKRCWITN---------KKTL 120
            + + GASGGIL +WD  K++  E + G FS+SIK      +  W++          +K L
Sbjct: 890  LPACGASGGILIIWDTKKLSREEVMLGSFSVSIKFTLNGCESLWLSAVYGPNNSALRKDL 949

Query: 121  WPELSSILECGVEAWCLGGDFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNG 180
            W ELS I       WC+GGDFNV R + E+    R T  M+ F++FI    +++LPL++ 
Sbjct: 950  WVELSDIAGLASPRWCVGGDFNVIRRSSEKLGGSRLTPSMKDFDDFISDCELIDLPLRSA 1009

Query: 181  RFTWSREGGLASRSLLDRFFIYNKWEEVFENRVRAIL------------------WGPYP 240
             FTWS          LDRF   N+WE+ F   ++ +L                  WGP P
Sbjct: 1010 SFTWSNMQVNPVCKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLETNPFKWGPTP 1069

Query: 241  FRFCSSWLLVKEYNLVIEGALNSPLGNGWAGFILHEQLHKVKITVK---EICYLSLDFLE 300
            FRF + WL    +            GNGW G     +L  VK  +K   +  +  L   +
Sbjct: 1070 FRFENMWLQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRK 1129

Query: 301  EEIFKAVKALGGNKAPRSDGFIKEFLVKHGLKSKGSFKNL 311
            E+I  A+  +  +   +  G   E L +  +K KG  + L
Sbjct: 1130 EDILSAL--VNFDSLEQEGGLSHELLAQRAIK-KGELEEL 1166

[Close]

BLAST of Cucsa.088670 vs. NCBI nr
Match: gi|147803328|emb|CAN68838.1| (hypothetical protein VITISV_030956 [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 69/191 (36.13%), Postives = 92/191 (48.17%), Query Frame = 1


Query: 231  EGALNSPLGNGWAGFILHEQLHKVKITVKEICYLSLDFLEEEIFKAVKALGGNKAPRSDG 290
            E    SP G  W      E L    I+ +    L   F EEEI KA+  +  +KAP  DG
Sbjct: 1232 EKLYTSPSGESWRV----EGLDWSPISGESAVRLESPFTEEEICKAIFQMDRDKAPGPDG 1291

Query: 291  FIKEFLVKHGLKSKGSFKNLFDDFHINVKLNACIQENFICSIQGKEDVVHAKDFRPICLT 350
            F            K     +F +FH +  +N     +FI  +  K       DFRPI L 
Sbjct: 1292 FTIAVFQDCWEVIKEDLVKVFTEFHRSGIINQSTNASFIVLLPKKSMSRRISDFRPISLI 1351

Query: 351  TLTCKAIAKLLVDRVKLVLDSIISPFQSAFTEGRKILDLVLIANEAI-EVYRAKKKRWIL 410
            T   K IAK+L  R++ VL   I   Q AF +GR+ILD VLIANE + E  R+ ++  + 
Sbjct: 1352 TSLYKIIAKVLAGRIREVLHETIHSTQGAFVQGRQILDAVLIANEIVDEKRRSGEEGVVF 1411

Query: 411  KLDLEKAFDGV 421
            K+D EKA+D V
Sbjct: 1412 KIDFEKAYDHV 1418

HSP 2 Score: 175.3 bits (443), Expect = 2.3e-40
Identity = 113/334 (33.83%), Postives = 165/334 (49.40%), Query Frame = 1


Query: 1    MKIISWNTRGLKDPTKCLALKKFIKNHHPDVVMIQDRKWKTLMQYFVKSIWNSKDSEWEF 60
            MKIISWNTRGL    K   +K F+++  PDVVMIQ+ K K   + FV S+W +++ +W  
Sbjct: 754  MKIISWNTRGLGSKKKRRVVKXFLRSEKPDVVMIQETK-KECDRRFVGSVWTARNKDWAA 813

Query: 61   VESLGASGGILTMWDKSKITVVENIKGRFSLSIKGDTMCKKRCWI---------TNKKTL 120
            + + GASGGIL +W+  K+   E + G FS+SIK      +  W+         T +K  
Sbjct: 814  LPASGASGGILIIWEAKKLCREEVVLGSFSVSIKFALDGCESLWLSAVYGPNNSTLRKDF 873

Query: 121  WPELSSILECGVEAWCLGGDFNVTRMADERPPIGRNTRGMRLFNNFIDSANIMELPLQNG 180
            W ELS I+      WC+GGDFNV R + ++    R T  M+ F++FI    +++LPL++ 
Sbjct: 874  WVELSDIVGLAYPRWCVGGDFNVIRRSSKKLGGSRLTPSMKDFDDFIRDCELIDLPLRSA 933

Query: 181  RFTWS--REGGLASRSLLDRFFIYNKWEEVFENRVRAIL------------------WGP 240
             FTWS  +E  +  R  LD F   N+WE+VF   ++ +L                  WGP
Sbjct: 934  SFTWSNMQENPVCKR--LDCFLYSNEWEQVFPQSLQGVLPRWTSDHWPIVLETNPFKWGP 993

Query: 241  YPFRFCSSWLLVKEYNLVIEGALNSPLGNGWAGFILHEQLHKVKITVKEICYLSLDFLEE 300
             PFRF + WL    +            GNGW G     +L  VK  +KE    S   L +
Sbjct: 994  MPFRFENMWLQHPNFKESFGRWWREFQGNGWEGHKFMRKLQFVKDKLKEWNKASFGELSK 1053

Query: 301  EIFKAVKALGG-NKAPRSDGFIKEFLVKHGLKSK 305
                 +  L   +   +  G   EFLV+  L+ +
Sbjct: 1054 RKKDILSNLANFDSLEQEGGLSHEFLVQRALRKR 1084

The following BLAST results are available for this feature:

BLAST of Cucsa.088670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YTX2_XENLA	3.4e-07	28.95	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=3 SV=1	[more]
LIN1_NYCCO	4.4e-07	26.11	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=3 SV=1	[more]
LORF2_MOUSE	1.3e-06	26.44	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus GN=Pol PE=1 SV=2	[more]

BLAST of Cucsa.088670 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BLC3_VITVI	4.0e-55	34.13	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_015752 P...	[more]
A5BN31_VITVI	4.4e-46	30.75	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042821 PE=4 SV=1	[more]
A5C364_VITVI	1.1e-44	31.79	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035898 PE=4 SV=1	[more]
A5CAA2_VITVI	1.1e-41	32.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030956 PE=4 SV=1	[more]
A5CAA2_VITVI	1.6e-16	36.13	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030956 PE=4 SV=1	[more]

BLAST of Cucsa.088670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20520.1	8.9e-06	41.27	RNA binding;RNA-directed DNA polymerases	[more]

BLAST of Cucsa.088670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147812154\|emb\|CAN60035.1\|	5.7e-55	34.13	hypothetical protein VITISV_015752 [Vitis vinifera]	[more]
gi\|147775294\|emb\|CAN61586.1\|	6.3e-46	30.75	hypothetical protein VITISV_042821 [Vitis vinifera]	[more]
gi\|147855269\|emb\|CAN79624.1\|	1.6e-44	31.79	hypothetical protein VITISV_035898 [Vitis vinifera]	[more]
gi\|147803328\|emb\|CAN68838.1\|	1.6e-41	32.94	hypothetical protein VITISV_030956 [Vitis vinifera]	[more]
gi\|147803328\|emb\|CAN68838.1\|	2.3e-16	36.13	hypothetical protein VITISV_030956 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom
IPR005135	Endo/exonuclease/phosphatase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.088670.1	Cucsa.088670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 335..420 score: 3.5
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	G3DSA:3.60.10.10		coord: 1..201 score: 4.3
IPR005135	Endonuclease/exonuclease/phosphatase	unknown	SSF56219	DNase I-like	coord: 1..201 score: 1.57
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 53..420 score: 1.8
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 53..420 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.088670	CSPI02G24560	Wild cucumber (PI 183967)	cgycpiB093

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.088670	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.088670	Cucurbita pepo (Zucchini)	cgycpeB0164
Cucsa.088670	Bottle gourd (USVL1VR-Ls)	cgylsiB097
Cucsa.088670	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.088670	Silver-seed gourd	carcgyB0016
Cucsa.088670	Silver-seed gourd	carcgyB0821
Cucsa.088670	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.088670	Watermelon (97103) v2	cgywmbB095
Cucsa.088670	Watermelon (97103) v2	cgywmbB097
Cucsa.088670	Wax gourd	cgywgoB111
Cucsa.088670	Wax gourd	cgywgoB112
Cucsa.088670	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.088670	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.088670	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.088670	Cucurbita moschata (Rifu)	cgycmoB0166
Cucsa.088670	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.088670	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.088670	Watermelon (Charleston Gray)	cgywcgB097
Cucsa.088670	Watermelon (Charleston Gray)	cgywcgB099
Cucsa.088670	Watermelon (97103) v1	cgywmB103