Cucsa.085640 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.085640
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	p55
Location	scaffold00870 : 94296 .. 95105 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTAATTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAGAAATTTCATATTATAATAAATGCAATCTTTGATTGCATCCACATCTCATGCATCTCTTTAGGGTTTAAGTACTTTTTGTTTTGTTGAAATAGAATTATTGTTATTATTTCATATAATTGAAGTGATTTTGGTAGTGTCCCTAGCTCTCAAGGGTTAGCTCCGAGTTCGACATTCTCCATCTGAAATTTGAGGGTTCTTGCAGGGGATTTTTCTCAGCAATGAAACTATTTCTCATGAAATAAGACGAATTAATTTCACTAGTTTGCCAAGAAGAATCACTTGAATCCCCGGCAAAGGTCTCATAACACAGAACCAAAAGAAAATGAAGCAAAAGATAAATATTACTTCACTTCTCTACTCATTCAACAATTTCCCTTATGGTTCAATTTCCATTTCTTT

mRNA sequence

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTAATTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAGAAATTTCATATTATAATAAATGCAATCTTTGATTGCATCCACATCTCATGCATCTCTTTAGGGTTTAAGTACTTTTTGTTTTGTTGAAATAGAATTATTGTTATTATTTCATATAATTGAAGTGATTTTGGTAGTGTCCCTAGCTCTCAAGGGTTAGCTCCGAGTTCGACATTCTCCATCTGAAATTTGAGGGTTCTTGCAGGGGATTTTTCTCAGCAATGAAACTATTTCTCATGAAATAAGACGAATTAATTTCACTAGTTTGCCAAGAAGAATCACTTGAATCCCCGGCAAAGGTCTCATAACACAGAACCAAAAGAAAATGAAGCAAAAGATAAATATTACTTCACTTCTCTACTCATTCAACAATTTCCCTTATGGTTCAATTTCCATTTCTTT

Coding sequence (CDS)

ATGAGTAGATGGGATAAGGAGTTTGATGATAAGGCACAACACAATATGAGCAATAGGAATATTGATGTGATGAACGAACCACTTAATTCTGTCTCTAAGAAAAGCAACGAGAATCAAAACTTAAAAGTGGAGGGTTCGAGCTCCAAAGGCAAAGCAACAGATGATCTGATAGTGAAAATGGAGGAAACTGTTGAGAAGATGAAAAGCGTGTGGTGTAGAAAGGATAATTTGGTGAGTAGTCCTTTGTTGGCTTGCTTTGTGGCTGCACAGACCCTGCTCGTGGTTTGTACTATCCAGCTTTTCTACACATCAACCGGAGATCACCAGCGCAGTGAAGTTTCTGTTAAAGACAGTTCTACTACTAATGAAGCTGCTGATAGAAGTGTAGAGGAAAATAAGATTAAAAAGTAG

Protein sequence

MSRWDKEFDDKAQHNMSNRNIDVMNEPLNSVSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKIKK*

Homology

[Close]

BLAST of Cucsa.085640 vs. TrEMBL
Match: A0A0A0LRJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.0e-69
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1


Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLNSVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPL SVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]

BLAST of Cucsa.085640 vs. TrEMBL
Match: A0A0A0LX14_CUCSA (p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of Cucsa.085640 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.1e-09
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 1


Query: 31  VSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQ 90
           +  KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +  LL CF +AQ
Sbjct: 13  ICSKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLATGSLLGCFESAQ 72

Query: 91  TLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
           TLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 73  TLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]

BLAST of Cucsa.085640 vs. TrEMBL
Match: A0A0A0LU71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-03
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 41  LKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQL 100
           L     SS     DDL VK+ E V  +KS       +++ PLLACFV+AQTLL+ CT +L
Sbjct: 88  LPPSSGSSLTAPLDDLKVKVNEMVNMLKS---EGHLVINGPLLACFVSAQTLLMACTTEL 147

Query: 101 FYTSTG 107
             T++G
Sbjct: 148 LPTTSG 150

[Close]

BLAST of Cucsa.085640 vs. NCBI nr
Match: gi|700209404|gb|KGN64500.1| (hypothetical protein Csa_1G060770 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 8.6e-69
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1


Query: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLNSVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60
           MSRWDKEFDDKAQHNMSNRNIDVMNEPL SVSKKSNENQNLKVEGSSSKGKATDDLIVKM
Sbjct: 1   MSRWDKEFDDKAQHNMSNRNIDVMNEPLISVSKKSNENQNLKVEGSSSKGKATDDLIVKM 60

Query: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120
           EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST
Sbjct: 61  EETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTGDHQRSEVSVKDSST 120

Query: 121 TNEAADRSVEENKIKK 137
           TNEAADRSVEENKIKK
Sbjct: 121 TNEAADRSVEENKIKK 136

[Close]

BLAST of Cucsa.085640 vs. NCBI nr
Match: gi|700209400|gb|KGN64496.1| (p55 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 1


Query: 44  EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYT 103
           EGSSS      DLI K+E+ V+ +K V  +KD LVS PLLACFV+AQ LL  CT +L   
Sbjct: 72  EGSSSD-VPMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLACFVSAQALLTACTAELISR 131

Query: 104 STGD-----HQRSEVSVKDSSTTNEAADRSVEENKIKK 137
           ST       HQ S++S+   STT  AA  S E  KIKK
Sbjct: 132 STRKAKPLVHQHSDLSINYGSTTT-AAGGSGETKKIKK 167

[Close]

BLAST of Cucsa.085640 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 58/144 (40.28%), Postives = 73/144 (50.69%), Query Frame = 1


Query: 15  NMSNRNIDV-MNEPLNSVSKK---SNENQNLKVEGSSSKGKAT-------------DDLI 74
           N S+ NI+V  + P NS  KK   SN   N   E   +K KA              DDLI
Sbjct: 215 NNSDPNIEVGPDTPENSRGKKTSGSNSRDNRSEEKRETKIKAQTDQNSGSSLTVPLDDLI 274

Query: 75  VKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQLFYTSTG-----DHQRSE 134
            +M+E V  +KS    +  LV+SPLL CFV+AQTLL+ C  +L   S G      HQ SE
Sbjct: 275 ARMKEMVNMLKS----EGRLVNSPLLGCFVSAQTLLMACATELLSISIGKSKALHHQGSE 334

Query: 135 VSVKDSSTTNEAADRSVEENKIKK 137
           +SV  SSTT    D + + N  KK
Sbjct: 335 ISVNYSSTTTN--DTAADGNGEKK 352

[Close]

BLAST of Cucsa.085640 vs. NCBI nr
Match: gi|659067697|ref|XP_008440827.1| (PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo])

HSP 1 Score: 47.4 bits (111), Expect = 2.4e-02
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1


Query: 28  LNSVSKKSNENQNLKV-EGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACF 87
           L+  S+  + ++ LK+ EG SS     DDLI ++EE V+K+K V   K + V+ PLLA F
Sbjct: 124 LDDTSEHEHRDKRLKLKEGWSSGVDRLDDLIERVEELVKKLKGV-DGKKDSVNGPLLASF 183

Query: 88  VAAQTLLVVCTIQLFYTSTGDH--QRSEVSVKDSSTTNEAADRSVEEN 133
           ++A T L   T QL   ST +     S++S  ++S  N        EN
Sbjct: 184 MSAFTQLENWTEQLLSASTVNEPSSPSKLSASNNSDPNIEVGPDTPEN 230

HSP 2 Score: 38.9 bits (89), Expect = 8.5e+00
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1


Query: 34  KSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLL 93
           + +  Q+  +E  SS+  +   LIVK+EETV+KMKSV  +K   +S  LLA F +A   L
Sbjct: 3   RHDTTQHNTMEDWSSRNVSVHFLIVKLEETVKKMKSVSGKK--AISDCLLAWFSSAYNQL 62

Query: 94  VVCTIQLF 102
              T ++F
Sbjct: 63  EARTNEVF 68

HSP 3 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 1


Query: 31  VSKKSNENQNLKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQ 90
           +  KSN  ++ +V+GSSS   AT DLI+K EET++K+KS   +KDNL +  LL CF +AQ
Sbjct: 13  ICSKSNSVKSSQVKGSSSL--ATKDLILKTEETIKKVKSECWKKDNLATGSLLGCFESAQ 72

Query: 91  TLLVVCTIQLFYTSTGDHQRSEVSVKDSSTTNEAADRSVEENKI 135
           TLLV CT  L      +++++      SS T    D  V+ N++
Sbjct: 73  TLLVACTAVL----PTENKKALPPSSGSSLTAPLDDLKVKVNEM 110

[Close]

BLAST of Cucsa.085640 vs. NCBI nr
Match: gi|700209403|gb|KGN64499.1| (hypothetical protein Csa_1G060760 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-03
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 41  LKVEGSSSKGKATDDLIVKMEETVEKMKSVWCRKDNLVSSPLLACFVAAQTLLVVCTIQL 100
           L     SS     DDL VK+ E V  +KS       +++ PLLACFV+AQTLL+ CT +L
Sbjct: 88  LPPSSGSSLTAPLDDLKVKVNEMVNMLKS---EGHLVINGPLLACFVSAQTLLMACTTEL 147

Query: 101 FYTSTG 107
             T++G
Sbjct: 148 LPTTSG 150

The following BLAST results are available for this feature:

BLAST of Cucsa.085640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRJ2_CUCSA	6.0e-69	99.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060770 PE=4 SV=1	[more]
A0A0A0LX14_CUCSA	1.7e-10	50.00	p55 OS=Cucumis sativus GN=Csa_1G059750 PE=4 SV=1	[more]
A0A0A0LU71_CUCSA	9.1e-09	41.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1	[more]
A0A0A0LU71_CUCSA	2.0e-03	43.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060760 PE=4 SV=1	[more]

BLAST of Cucsa.085640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209404\|gb\|KGN64500.1\|	8.6e-69	99.26	hypothetical protein Csa_1G060770 [Cucumis sativus]	[more]
gi\|700209400\|gb\|KGN64496.1\|	2.4e-10	50.00	p55 [Cucumis sativus]	[more]
gi\|659067697\|ref\|XP_008440827.1\|	2.6e-09	40.28	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo]	[more]
gi\|659067697\|ref\|XP_008440827.1\|	2.4e-02	36.11	PREDICTED: uncharacterized protein LOC103485133 isoform X1 [Cucumis melo]	[more]
gi\|700209403\|gb\|KGN64499.1\|	2.8e-03	43.94	hypothetical protein Csa_1G060760 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.085640.1	Cucsa.085640.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.085640	Bottle gourd (USVL1VR-Ls)	cgylsiB093
Cucsa.085640	Bottle gourd (USVL1VR-Ls)	cgylsiB094
Cucsa.085640	Melon (DHL92) v3.6.1	cgymedB094
Cucsa.085640	Melon (DHL92) v3.6.1	cgymedB096
Cucsa.085640	Silver-seed gourd	carcgyB0566
Cucsa.085640	Silver-seed gourd	carcgyB0715
Cucsa.085640	Silver-seed gourd	carcgyB1050
Cucsa.085640	Silver-seed gourd	carcgyB1119
Cucsa.085640	Cucumber (Chinese Long) v3	cgycucB089
Cucsa.085640	Cucumber (Chinese Long) v3	cgycucB090
Cucsa.085640	Watermelon (97103) v2	cgywmbB091
Cucsa.085640	Watermelon (97103) v2	cgywmbB092
Cucsa.085640	Wax gourd	cgywgoB108
Cucsa.085640	Cucumber (Gy14) v1	cgycgyB002
Cucsa.085640	Cucurbita maxima (Rimu)	cgycmaB0162
Cucsa.085640	Cucurbita maxima (Rimu)	cgycmaB0163
Cucsa.085640	Cucurbita maxima (Rimu)	cgycmaB0164
Cucsa.085640	Cucurbita maxima (Rimu)	cgycmaB0165
Cucsa.085640	Cucurbita moschata (Rifu)	cgycmoB0157
Cucsa.085640	Cucurbita moschata (Rifu)	cgycmoB0158
Cucsa.085640	Cucurbita moschata (Rifu)	cgycmoB0159
Cucsa.085640	Cucurbita moschata (Rifu)	cgycmoB0160
Cucsa.085640	Wild cucumber (PI 183967)	cgycpiB090
Cucsa.085640	Wild cucumber (PI 183967)	cgycpiB091
Cucsa.085640	Cucumber (Chinese Long) v2	cgycuB087
Cucsa.085640	Cucumber (Chinese Long) v2	cgycuB088
Cucsa.085640	Melon (DHL92) v3.5.1	cgymeB097
Cucsa.085640	Melon (DHL92) v3.5.1	cgymeB096
Cucsa.085640	Watermelon (Charleston Gray)	cgywcgB094
Cucsa.085640	Watermelon (Charleston Gray)	cgywcgB095
Cucsa.085640	Watermelon (97103) v1	cgywmB097
Cucsa.085640	Watermelon (97103) v1	cgywmB098
Cucsa.085640	Cucurbita pepo (Zucchini)	cgycpeB0157
Cucsa.085640	Cucurbita pepo (Zucchini)	cgycpeB0158
Cucsa.085640	Cucurbita pepo (Zucchini)	cgycpeB0159