Cucsa.079930 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.079930
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionADP-ribosylation factor
Locationscaffold00793 : 2870521 .. 2871168 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTATCACCGTCCTTGTCGTTGCTATTGTCACTCTCTCTCCCATCCTCGACAAACATCCTCTCTTCGTTATCAAAAATTTCCTCAGTCTCCATATCGTCTTGGACTACTACGATCCCACAAAACTCCACAAGATCTCCAACGGTTGTTTTTTCCATACACTTCGTTTTTCCCTTTTGGCCCTCTTCCTCTCTCATTCACGACCTTTCTTTCTTCATCATTCTCCACCTTCGATATTCCTCCAATCTGAATCTCTCTTCACTTTTCATATCTTCTTTCAATTCATCCCTTCTCTTTTCTTATCACTTATGTAATCTCTTCAATCTCTTTTCATATTTTACGGATTTTTGTGACGGGATATCGGTTTTACCATTCTTCTAATTGTTATTTCTTCATCTTTTCCTGATTTCTTGTTCTCTTTTGGTGTCTTTGTTTTTTGTTACACTGCTTGATTTGATTACTTTTGTGGGTTTCTTTTTGTTTCATCTCAGGTCATTCTTACACAAACTGAAATAGCCGGTTAAGGGAAAGGAGAAATGGGATTGACCTTCACCAAGCTTTTCAGTAGGCTTTTTGCCAAGAAGGAGATGCAAATTTTTATGGTTGGTCTTGATGCTGCTAGAAAGACCACGATCTCGTACAAGCTCTAG

mRNA sequence

ACTATCACCGTCCTTGTCGTTGCTATTGTCACTCTCTCTCCCATCCTCGACAAACATCCTCTCTTCGTTATCAAAAATTTCCTCAGTCTCCATATCGTCTTGGACTACTACGATCCCACAAAACTCCACAAGATCTCCAACGGGAAAGGAGAAATGGGATTGACCTTCACCAAGCTTTTCAGTAGGCTTTTTGCCAAGAAGGAGATGCAAATTTTTATGGTTGGTCTTGATGCTGCTAGAAAGACCACGATCTCGTACAAGCTCTAG

Coding sequence (CDS)

ACTATCACCGTCCTTGTCGTTGCTATTGTCACTCTCTCTCCCATCCTCGACAAACATCCTCTCTTCGTTATCAAAAATTTCCTCAGTCTCCATATCGTCTTGGACTACTACGATCCCACAAAACTCCACAAGATCTCCAACGGGAAAGGAGAAATGGGATTGACCTTCACCAAGCTTTTCAGTAGGCTTTTTGCCAAGAAGGAGATGCAAATTTTTATGGTTGGTCTTGATGCTGCTAGAAAGACCACGATCTCGTACAAGCTCTAG

Protein sequence

TITVLVVAIVTLSPILDKHPLFVIKNFLSLHIVLDYYDPTKLHKISNGKGEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL*
Homology
[Close]
BLAST of Cucsa.079930 vs. Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-10
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGL+FTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGL+FTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. TrEMBL
Match: A0A0A0KCV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076800 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 42/48 (87.50%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 1   TITVLVVAIVTLSPILDKHPLFVIKNFLSLHIVLDYYDPTKLHKISNG 49
           TITVLVVA   LSPILDKHPL VIKN LSLHIVLDYYDP KLHKISNG
Sbjct: 56  TITVLVVANGALSPILDKHPLSVIKNLLSLHIVLDYYDPAKLHKISNG 103

[Close]
BLAST of Cucsa.079930 vs. TrEMBL
Match: J3L559_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-10
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 44 KISNGKGEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          K  + +GEMGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 54 KRCHAQGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 98

[Close]
BLAST of Cucsa.079930 vs. TrEMBL
Match: A0A0E0JQ56_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-10
Identity = 36/43 (83.72%), Postives = 37/43 (86.05%), Query Frame = 1 

Query: 46  SNGKGEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
           S   GEMGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 102 SRAAGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 144

[Close]
BLAST of Cucsa.079930 vs. TrEMBL
Match: A0A0E0C9E1_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 1 

Query: 39  PTKLHKISNGKGEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
           P +  K +   GEMGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 59  PHRKRKPTRLVGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 108

[Close]
BLAST of Cucsa.079930 vs. TrEMBL
Match: A0A0D3EVD4_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 

Query: 50  GEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
           GEMGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 360 GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 398

[Close]
BLAST of Cucsa.079930 vs. TAIR10
Match: AT5G14670.1 (AT5G14670.1 ADP-ribosylation factor A1B)

HSP 1 Score: 63.5 bits (153), Expect = 7.4e-11
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGL FTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLNFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. TAIR10
Match: AT1G23490.1 (AT1G23490.1 ADP-ribosylation factor 1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGL+F KLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. TAIR10
Match: AT1G10630.1 (AT1G10630.1 ADP-ribosylation factor A1F)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGL+F KLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. TAIR10
Match: AT1G70490.1 (AT1G70490.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGL+F KLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. TAIR10
Match: AT2G47170.1 (AT2G47170.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-10
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 52 MGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          MGL+F KLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 1  MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 37

[Close]
BLAST of Cucsa.079930 vs. NCBI nr
Match: gi|449473469|ref|XP_004153890.1| (PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 42/48 (87.50%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 1   TITVLVVAIVTLSPILDKHPLFVIKNFLSLHIVLDYYDPTKLHKISNG 49
           TITVLVVA   LSPILDKHPL VIKN LSLHIVLDYYDP KLHKISNG
Sbjct: 56  TITVLVVANGALSPILDKHPLSVIKNLLSLHIVLDYYDPAKLHKISNG 103

[Close]
BLAST of Cucsa.079930 vs. NCBI nr
Match: gi|659120321|ref|XP_008460132.1| (PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 1 

Query: 1   TITVLVVAIVTLSPILDKHPLFVIKNFLSLHIVLDYYDPTKLHKISNG 49
           TITVLVV+   LSPILDKHPL VIKN LSLHIVLDYYDP KLHKISNG
Sbjct: 56  TITVLVVSNGALSPILDKHPLSVIKNILSLHIVLDYYDPAKLHKISNG 103

[Close]
BLAST of Cucsa.079930 vs. NCBI nr
Match: gi|20161472|dbj|BAB90396.1| (ADP-ribosylation factor [Oryza sativa Japonica Group])

HSP 1 Score: 71.6 bits (174), Expect = 7.7e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1 

Query: 48  GKGEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
           G GEMGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 175 GDGEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 215

[Close]
BLAST of Cucsa.079930 vs. NCBI nr
Match: gi|960468742|ref|XP_010232477.2| (PREDICTED: ADP-ribosylation factor 2 [Brachypodium distachyon])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 

Query: 50  GEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
           GEMGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 75  GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 113

[Close]
BLAST of Cucsa.079930 vs. NCBI nr
Match: gi|475592749|gb|EMT22177.1| (ADP-ribosylation factor [Aegilops tauschii])

HSP 1 Score: 68.6 bits (166), Expect = 6.5e-09
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 1 

Query: 48 GKGEMGLTFTKLFSRLFAKKEMQIFMVGLDAARKTTISYKL 89
          G  EMGLTFTKLFSRLFAKKEM+I MVGLDAA KTTI YKL
Sbjct: 20 GGDEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKL 60

The following BLAST results are available for this feature:
BLAST of Cucsa.079930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ARF1_ORYSJ3.4e-1089.19ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 S... [more]
ARF_MAIZE3.4e-1089.19ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2[more]
ARF2_ORYSJ3.4e-1089.19ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2[more]
ARF_VIGUN1.0e-0986.49ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3[more]
ARF1_DAUCA1.0e-0986.49ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2[more]
BLAST of Cucsa.079930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCV6_CUCSA1.4e-1387.50Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076800 PE=4 SV=1[more]
J3L559_ORYBR9.1e-1080.00Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1[more]
A0A0E0JQ56_ORYPU9.1e-1083.72Uncharacterized protein OS=Oryza punctata PE=3 SV=1[more]
A0A0E0C9E1_9ORYZ1.2e-0974.00Uncharacterized protein OS=Oryza meridionalis PE=3 SV=1[more]
A0A0D3EVD4_9ORYZ2.0e-0989.74Uncharacterized protein OS=Oryza barthii PE=3 SV=1[more]
BLAST of Cucsa.079930 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14670.17.4e-1186.49 ADP-ribosylation factor A1B[more]
AT1G23490.12.1e-1083.78 ADP-ribosylation factor 1[more]
AT1G10630.12.1e-1083.78 ADP-ribosylation factor A1F[more]
AT1G70490.12.1e-1083.78 Ras-related small GTP-binding family protein[more]
AT2G47170.13.6e-1083.78 Ras-related small GTP-binding family protein[more]
BLAST of Cucsa.079930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449473469|ref|XP_004153890.1|1.9e-1387.50PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis sativus][more]
gi|659120321|ref|XP_008460132.1|4.3e-1385.42PREDICTED: fasciclin-like arabinogalactan protein 10 [Cucumis melo][more]
gi|20161472|dbj|BAB90396.1|7.7e-1087.80ADP-ribosylation factor [Oryza sativa Japonica Group][more]
gi|960468742|ref|XP_010232477.2|2.9e-0989.74PREDICTED: ADP-ribosylation factor 2 [Brachypodium distachyon][more]
gi|475592749|gb|EMT22177.1|6.5e-0985.37ADP-ribosylation factor [Aegilops tauschii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006471 protein ADP-ribosylation
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005794 Golgi apparatus
molecular_function GO:0005525 GTP binding
molecular_function GO:0005215 transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.079930.1Cucsa.079930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 56..88
score: 9.
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 50..88
score: 1.
NoneNo IPR availablePANTHERPTHR11711ADP RIBOSYLATION FACTOR-RELATEDcoord: 35..88
score: 1.9
NoneNo IPR availablePANTHERPTHR11711:SF181ADP-RIBOSYLATION FACTOR A1Fcoord: 35..88
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.079930Cucurbita maxima (Rimu)cgycmaB0133
Cucsa.079930Cucurbita maxima (Rimu)cgycmaB0139
Cucsa.079930Cucurbita moschata (Rifu)cgycmoB0130
Cucsa.079930Cucurbita moschata (Rifu)cgycmoB0135
Cucsa.079930Wild cucumber (PI 183967)cgycpiB079
Cucsa.079930Cucumber (Chinese Long) v2cgycuB076
Cucsa.079930Melon (DHL92) v3.5.1cgymeB083
Cucsa.079930Melon (DHL92) v3.5.1cgymeB085
Cucsa.079930Watermelon (Charleston Gray)cgywcgB081
Cucsa.079930Watermelon (97103) v1cgywmB083
Cucsa.079930Cucurbita pepo (Zucchini)cgycpeB0137
Cucsa.079930Cucurbita pepo (Zucchini)cgycpeB0139
Cucsa.079930Bottle gourd (USVL1VR-Ls)cgylsiB081
Cucsa.079930Melon (DHL92) v3.6.1cgymedB083
Cucsa.079930Silver-seed gourdcarcgyB0004
Cucsa.079930Cucumber (Chinese Long) v3cgycucB080
Cucsa.079930Watermelon (97103) v2cgywmbB078
Cucsa.079930Wax gourdcgywgoB092