Cucsa.079690 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.079690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold00793 : 2556858 .. 2559555 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTAAAGACATTGTCAACTTACATCCACTTACTTTTCTTTCAGATGCTATTTCTTTGGCGTCCAAGATTGAAGAGAGTGACGAGGTCAAGAAAACCAAGACTTATCAAAGAAAGAACAATTGGGATAAACAACAACAAAGAACTAATCTCACTGACTCATTTAGAAATTTTCAACAAGGAAGCTCATCCACACTCTCATAGCCCATCAAGAAGGATGGCATCCACCCAAAAGTAACACCACAAAACCAGGTGAAATCTCTAGTAAAAAaGAAAGGTGAAAACATCTATAATCGTCCTACTTTGGGTAAATGTTTCAGGTGTGAGCAACAAGGACATCTCTCCAATGAGTGCCCTCAAAGAAGAGCTTTGACAATTGAAGAAGGGCAAGAAGATGATGATTCGGATGACAATGTCCATGAAGTTTCAACCTCAGATGAAGGAGATCAATTATCTTGTGTAGTTCAAAGAATACTTCTCACTCCAATAGTTGATTACATACCTCAAAGAAACTCTCTTTTCAAAATCAGATGCACAATTAACAGTAAAGTGTGTCAAGTTATTATTGATAGGGGTAGCAGTGAAAATTTAGTATCTAAAAAGCTTGTTACCGTCCTAAATTTAAAAACTGAACCCCACCCAAACCCCTATAAGGTTAGTTGGATAAAAAAGCGGGGAGAAGCTACTGTTAGTGAGGTTTGCACTGTGTCTTTATCAATAGGACAGCACTATAAAGACCAACTCATATGCGATGTTCTAGAATGGATCTTGCCATATTCTTTTAGGACGTCCTTGGCAGTATGACACAAATTATGTTCATAGCGGTAGAGCTAACACCATTGAGTTTGATTGGATGAGTAGACGTGTAGTTATGGACTTTGTGTTAGGCTAACACCACTATTTGGGAAGATTTAGCTATGGACTTTGTGTTAGGCTTACCAAGAACACAGAGGGGTCACGATTCGATTTTTGTGGTAGTAGACCGTTTTAGCAAAATGGCTCATTTTATCCCTTGCTAAAAGACTTTTGATGCTTTGAATATTGCTAATCTGTTTTTTCGAGAAATTGTTAGATTACACGAAATTCCTATAACAATAGTCTCATATCGTGATGTCAAGTTCTTGAGCCACTTTTGGAGATCCTAATGGAAGAAATTTGACACCAATTTACTGTTTAGTACAGCCAGCCATCCCCAAGCTGACGCCCAAACAGAGGTTACTAACCGTACTCTTGGCAACCCCATTCGATGTCTTAGCGGGGATAAGCCTAAACAATGGGTCCTAACATTGCCTCAAGCTGAATTCACCTTCAATCACATGGCAAATCGCTCAGCAGGGAAGTCTCCATTTGAGGTTGTCTATACTAGTCTCCCTCGGGTTACTTTTGATTTAGCTCATCTTCCTTCTGTTGTTGTTGTTGATGTCGGTATGGAGGTTGAAGCCATGGCTGACCATATTTCCAAGTTGTACTAAGAAGTAAAGAATCATCTAGAGCTCGCTAATGATTCTTATAAAATGGCCACAATTCTCACAAGTGTTTTAAGGAGTATCAAGTGAGTGACCTTGTTATGGTATATCTTCACAAATCACGTCTTCCTGCTGGTCATCATTCTAAAATGACCAACAAGTGCATTGGTCTGTTTCAAATTTTGGAGAGACTCGGCCCTAGTGCTTACCAATTAGATCTCCCAGCTACCATGAGGATCAATTCATCATTCAATGTTTCTGACCTTTCTCCTTACCATGCTCCTGATTCCTTTTCTTTGGCTCCCTAACTTGCACTCGAGGATGAGTTTTTTGCTAAAGGAGGGGTCTGATGTAGAACATCTTAGATTCTTGATGTTTCTTTAACTATTTCTTAAGCTTTTTtATTTTAGTTTAGGTTTATTATTCTTGTATCTTGAGTTAGTTCAAAAATAGCTACAAAGTTTGTTCACAAAATAAATAACTCCTAACTGATTCTTGTTAAGCTTTCAGCCTATAAAAGGCTCTCACATTCATTAATAAAATCATATCTTGAAGAATTATCATAAACTTTCCATCCTTTGCTTCAGACATAAAACCGTGGGATGCAATTGTGTGTTCACTCTCAAATACAAGGCAGATGGAACCCTTGACTGACACAAGGCGAGGTTAGTTGCTGGGTATACTCAAACCTACGATGTTGATTATTCAAAAACCTTTTCCTTAGTTGCTAAACTTAATACAATTAGTCCTACTATATGTTGTTGTGAACAAAGACTGGCATCTTTATCAGCTGAATGTTAAGAATGTGTTCCTGAATAGGGACCTAGAGGAGGAAGTCTACATGAGCCCCCAGGGTTTAAAGCTCAGTTCGGTCATCAAGGACACTCTAACCCTTCTTTGTTTACAAAGGTCTCCAAGGAGGGGAAGATCGCAGTATTGATTGTTTATGTTGATGACATCATTCTATCTGGGGATGACCATGCTGAAATCATCCAACTGAAAAAAAGGATGGGTGATGAGTTTAAAATCAAAGACTTGGAAAATCTGAAATATTTCCTTAGAATGGAGGTAGCCAAATCTAAAGAAGGTATCTTCGTATCTCAGAGGAAGTATTCCCTTGATTCATTGACCAAGACAAGTATGTGGGGTTATCGTCCTGCTGATACTCCCATTGAATTCAACTATGAACTGGGAAATTCATGTGACAAAATTCCAGTTGATAAAGAGTAG

mRNA sequence

atgaaattaaagacattgtcaacttacatccacttacttttctttcagatgctatttctttggcgtccaagattgaagagagtgacgaggtcaagaaaaccaagacttatcaaagaaagaacaattgggataaacaacaacaaagaactaatctcactgactcatttagaaattttcaacaaggaagctcatccacactctcatagcccatcaagaaggatggcatccacccaaaagtgtgagcaacaaggacatctctccaatgagtgccctcaaagaagagctttgacaattgaagaagggcaagaagatgatgattcggatgacaatGCTAACaccactatttgggaagatttagctatggactttgtgttaggcttaccaagaacacagaggggtcacgattcgatttttgtgaaatttgacaccaatttactgtttagtacagccagccatccccaagctgacgcccaaacagaggttactaaccgtactcttggcaaccccattcgatgtcttagcggggataagcctaaacaatgggtcctaacattgcctcaagctgaattcaccttcaatcacatggcaaatcgctcagcagggaagtctccatttgaggttgtctatactagtctccctcgggttacttttgatttagctcatcttccttctgttgttgttgttgatgtcgTGAGTGACCTTGTTATGGTATATCTTCACAAATCACGTCTTCCTGCTGGTCATCATTCTAAAATGACCAACAAGTGCATTGGTCTGTTTCAAATTTTGGAGAGACTCGGCCCTAGTGCTTACCAATTAGATCTCCCAGCTACCATGAGGATCAATTCATCATTCAATGTTTCTGACCTTTCTCCTTACCATggacctagaggaggaagtctacatgagcccccagggtttaaagctcagttcggtcatcaaggacactctaacccttctttgtttacaaaggtctccaaggaggggaagatcgcagtattgattgtttatgttgatgacatcattctatctggggatgaccatgctgaaatcatccaactgaaaaaaaggatgggtgatgagtttaaaatcaaagacttggaaaatctgaaatatttccttagaatggaggtagccaaatctaaagaaggtatcttcgtatctcagaggaagtattcccttgattcattgaccaagacaagtatgtggggttatcgtcctgctgatactcccattgaattcaactatgaactgggaaattcatgtgacaaaattccagttgataaagagtag

Coding sequence (CDS)

ATGAAATTAAAGACATTGTCAACTTACATCCACTTACTTTTCTTTCAGATGCTATTTCTTTGGCGTCCAAGATTGAAGAGAGTGACGAGGTCAAGAAAACCAAGACTTATCAAAGAAAGAACAATTGGGATAAACAACAACAAAGAACTAATCTCACTGACTCATTTAGAAATTTTCAACAAGGAAGCTCATCCACACTCTCATAGCCCATCAAGAAGGATGGCATCCACCCAAAAGTGTGAGCAACAAGGACATCTCTCCAATGAGTGCCCTCAAAGAAGAGCTTTGACAATTGAAGAAGGGCAAGAAGATGATGATTCGGATGACAATGCTAACACCACTATTTGGGAAGATTTAGCTATGGACTTTGTGTTAGGCTTACCAAGAACACAGAGGGGTCACGATTCGATTTTTGTGAAATTTGACACCAATTTACTGTTTAGTACAGCCAGCCATCCCCAAGCTGACGCCCAAACAGAGGTTACTAACCGTACTCTTGGCAACCCCATTCGATGTCTTAGCGGGGATAAGCCTAAACAATGGGTCCTAACATTGCCTCAAGCTGAATTCACCTTCAATCACATGGCAAATCGCTCAGCAGGGAAGTCTCCATTTGAGGTTGTCTATACTAGTCTCCCTCGGGTTACTTTTGATTTAGCTCATCTTCCTTCTGTTGTTGTTGTTGATGTCGTGAGTGACCTTGTTATGGTATATCTTCACAAATCACGTCTTCCTGCTGGTCATCATTCTAAAATGACCAACAAGTGCATTGGTCTGTTTCAAATTTTGGAGAGACTCGGCCCTAGTGCTTACCAATTAGATCTCCCAGCTACCATGAGGATCAATTCATCATTCAATGTTTCTGACCTTTCTCCTTACCATGGACCTAGAGGAGGAAGTCTACATGAGCCCCCAGGGTTTAAAGCTCAGTTCGGTCATCAAGGACACTCTAACCCTTCTTTGTTTACAAAGGTCTCCAAGGAGGGGAAGATCGCAGTATTGATTGTTTATGTTGATGACATCATTCTATCTGGGGATGACCATGCTGAAATCATCCAACTGAAAAAAAGGATGGGTGATGAGTTTAAAATCAAAGACTTGGAAAATCTGAAATATTTCCTTAGAATGGAGGTAGCCAAATCTAAAGAAGGTATCTTCGTATCTCAGAGGAAGTATTCCCTTGATTCATTGACCAAGACAAGTATGTGGGGTTATCGTCCTGCTGATACTCCCATTGAATTCAACTATGAACTGGGAAATTCATGTGACAAAATTCCAGTTGATAAAGAGTAG

Protein sequence

MKLKTLSTYIHLLFFQMLFLWRPRLKRVTRSRKPRLIKERTIGINNNKELISLTHLEIFNKEAHPHSHSPSRRMASTQKCEQQGHLSNECPQRRALTIEEGQEDDDSDDNANTTIWEDLAMDFVLGLPRTQRGHDSIFVKFDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSAGKSPFEVVYTSLPRVTFDLAHLPSVVVVDVVSDLVMVYLHKSRLPAGHHSKMTNKCIGLFQILERLGPSAYQLDLPATMRINSSFNVSDLSPYHGPRGGSLHEPPGFKAQFGHQGHSNPSLFTKVSKEGKIAVLIVYVDDIILSGDDHAEIIQLKKRMGDEFKIKDLENLKYFLRMEVAKSKEGIFVSQRKYSLDSLTKTSMWGYRPADTPIEFNYELGNSCDKIPVDKE*
Homology
[Close]
BLAST of Cucsa.079690 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-07
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 1 

Query: 148  STASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSAGKSPFEV 207
            S+A+HPQ D Q+E T +TL   +R  +    + W + LPQ EF +N    R+ GKSPFE+
Sbjct: 1260 SSANHPQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEI 1319

Query: 208  VYTSLPRVTFDLAHLPSVVVV 229
                      DL +LP+   +
Sbjct: 1320 ----------DLGYLPNTPAI 1330

[Close]
BLAST of Cucsa.079690 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-07
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 1 

Query: 334 LIVYVDDIILSGDDHAEIIQLKKRMGDEFKIKDLENLKYFLRMEVAKSKEGIFVSQRKYS 393
           L++YVDDI+L+G  +  +  L  ++   F +KDL  + YFL +++     G+F+SQ KY+
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 394 LDSLTKTSMWGYRPADTPIEFNYELGNSCDKIP 427
              L    M   +P  TP+        S  K P
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP 95

[Close]
BLAST of Cucsa.079690 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-07
Identity = 33/125 (26.40%), Postives = 65/125 (52.00%), Query Frame = 1 

Query: 308  KAQFGHQGHSNPSLFTKVSKEGKIAVLIVYVDDIILSGDDHAEIIQLKKRMGDEFKIKDL 367
            K+Q   + +S+P ++ K   E    +L++YVDD+++ G D   I +LK  +   F +KDL
Sbjct: 979  KSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDL 1038

Query: 368  ENLKYFLRMEVAKSKEG--IFVSQRKYSLDSLTKTSMWGYRPADTPIEFNYELGNSCDKI 427
               +  L M++ + +    +++SQ KY    L + +M   +P  TP+  + +L       
Sbjct: 1039 GPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPT 1098

Query: 428  PVDKE 431
             V+++
Sbjct: 1099 TVEEK 1103

[Close]
BLAST of Cucsa.079690 vs. TrEMBL
Match: M5XE48_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015308mg PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31
Identity = 87/217 (40.09%), Postives = 115/217 (53.00%), Query Frame = 1 

Query: 115  IWEDLAMDFVLGLPRTQRGHDSIFVKFDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLS 174
            IW+DLAMDFVLGLPRTQRG DS+FV  D    FS  +       TEVTN TLGN +R + 
Sbjct: 937  IWQDLAMDFVLGLPRTQRGVDSVFVVVDR---FSKMA-------TEVTNWTLGNMVRSVC 996

Query: 175  GDKPKQWVLTLPQAEFTFNHMANRSAGKSPFEVVYTSLPRVTFDLAHLPS---------- 234
            G+KPKQW   LP  EF +N   + + GKSPF +VYT++P    DL   P           
Sbjct: 997  GEKPKQWDYALPHVEFAYNSAVHSATGKSPFSIVYTAIPNHIVDLVKFPRGQQTSVAAKN 1056

Query: 235  -----VVVVDVV--------------------------SDLVMVYLHKSRLPAGHHSKMT 291
                 V V D V                           D VM++L K R P G +SK+ 
Sbjct: 1057 LAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKERFPVGTYSKLK 1116

[Close]
BLAST of Cucsa.079690 vs. TrEMBL
Match: M5XE48_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015308mg PE=4 SV=1)

HSP 1 Score: 35.0 bits (79), Expect = 2.7e+02
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 1 

Query: 79  KCEQQGHLSNECPQRR-ALTIEEGQEDDDSDD 110
           +C++ GH SN CP+R+ A  IEE  ED++ D+
Sbjct: 321 RCQKPGHRSNVCPERKQANFIEEVDEDEEKDE 352


HSP 2 Score: 141.4 bits (355), Expect = 2.7e-30
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 1 

Query: 141  FDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSA 200
            F T+L FS+A HPQ D QTEV NR+LG+ +RCL GDK   W L LP AEF +N+ ANR+ 
Sbjct: 1152 FGTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLILPVAEFAYNNSANRTT 1211

Query: 201  GKSPFEVVYTSLPRVTFDLAHLP--------SVVVVDVV----SDLVMVYLHKSRLPAGH 260
            GKSPFE+VY  +PR   DLA LP        +    + +     D VMV +   R P   
Sbjct: 1212 GKSPFEIVYGVMPRPPIDLAPLPIDACPSESATTFAEHIHFQEGDYVMVRVCPERFPKHS 1271

Query: 261  HSKMTNKCIGLFQILERLGPSAYQLDLPATMRINSSFNVSDLSPY 294
              K+  + +GL++IL +LG +AY ++LP+ + I+  FNVSDL PY
Sbjct: 1272 FKKLHARSMGLYRILRKLGANAYLVELPSDVHISPIFNVSDLFPY 1316

[Close]
BLAST of Cucsa.079690 vs. TrEMBL
Match: M5X976_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024499mg PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-02
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 

Query: 114  TIWEDLAMDFVLGLPRTQRGHDSIFVKFDTNLLFSTASH 153
            T W+DL+MDFVLGLP+T RGHDSI V  D    FS  +H
Sbjct: 1066 TPWKDLSMDFVLGLPKTARGHDSILVVVDR---FSKMAH 1101


HSP 2 Score: 137.9 bits (346), Expect = 2.9e-29
Identity = 90/250 (36.00%), Postives = 121/250 (48.40%), Query Frame = 1 

Query: 115  IWEDLAMDFVL-----------------------GLPRT-QRGHDSIFVK---------F 174
            IW+DLAMDFVL                       G+P +     D+ F+          F
Sbjct: 1095 IWQDLAMDFVLACKKIADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLF 1154

Query: 175  DTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSAG 234
             T L  S+ +HPQ D QTEVTNRTLGN +R + G+KPKQW   LPQAEF +N   + + G
Sbjct: 1155 GTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQAEFAYNSAVHSATG 1214

Query: 235  KSPFEVVYTSLPRVTFDLAHLPS---------------VVVVDVV--------------- 291
            KSPF +VYT+ P    DL  LP                V V D V               
Sbjct: 1215 KSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAA 1274

[Close]
BLAST of Cucsa.079690 vs. TrEMBL
Match: M5XJ91_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1)

HSP 1 Score: 36.6 bits (83), Expect = 9.2e+01
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1 

Query: 79  KCEQQGHLSNECPQRR-ALTIEEGQEDDDSDD 110
           +C++ GH SN CP+R+ A  IEE  ED+++D+
Sbjct: 357 RCQKPGHRSNVCPERKQANFIEEADEDEENDE 388


HSP 2 Score: 137.5 bits (345), Expect = 3.8e-29
Identity = 73/158 (46.20%), Postives = 98/158 (62.03%), Query Frame = 1 

Query: 141  FDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSA 200
            F T+L FS+A HPQ D QTEV NR+LG+ +RCL GDK   W L LP AEF +N+ ANR+ 
Sbjct: 1198 FSTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLILPVAEFAYNNSANRTI 1257

Query: 201  GKSPFEVVYTSLPRVTFDLAHLPSVVVVDVVSDLVMVY---LHKSRLPAGHHSKMTNKCI 260
            GKSPFE+VY  +PR   DLA LP        +     +   LH+ R P     K+  + +
Sbjct: 1258 GKSPFEIVYGVMPRPPIDLAPLPIDARPSESTTTFAEHIRRLHEERFPKHSFKKLHARSM 1317

Query: 261  GLFQILERLGPSAYQLDLPATMRINSSFNVSDLSPYHG 296
            G ++IL +LG +AY ++LP+ + I+  FNVSDL P  G
Sbjct: 1318 GPYRILRKLGANAYLVELPSDVHISLIFNVSDLFPCRG 1355

[Close]
BLAST of Cucsa.079690 vs. TrEMBL
Match: M5W531_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026856mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 7.2e-28
Identity = 83/231 (35.93%), Postives = 114/231 (49.35%), Query Frame = 1 

Query: 141  FDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSA 200
            F T L  S+ +HPQ D QTEVTNRTLGN +R + G+KPKQW   LPQ EF +N   + + 
Sbjct: 1263 FGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQMEFAYNSAVHSAT 1322

Query: 201  GKSPFEVVYTSLPRVTFDLAHLPS---------------VVVVDVV-------------- 260
            GKSPF +VYT+ P    DL  LP                V V D V              
Sbjct: 1323 GKSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAA 1382

Query: 261  ------------SDLVMVYLHKSRLPAGHHSKMTNKCIGLFQILERLGPSAYQLDLPATM 320
                         D VMV+L K R PAG +SK+  K  G +++L+R+  +AY ++LP +M
Sbjct: 1383 ADRHRRVKVFQEGDSVMVFLRKERFPAGTYSKLKPKKYGPYKVLKRINDNAYDIELPDSM 1442

Query: 321  RINSSFNVSDLSPYHGP--RGGSLHEPPGFKAQFGHQGHSNPSLFTKVSKE 329
             I++ FNV+DL  +      G  + +   F A    +G S    F + S +
Sbjct: 1443 GISNIFNVADLYEFREDEVEGTDVEQMTDFIAVELEKGRSGNMQFCRPSSD 1493

[Close]
BLAST of Cucsa.079690 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-15
Identity = 40/100 (40.00%), Postives = 66/100 (66.00%), Query Frame = 1 

Query: 314 QGHSNPSLFTKVSKEGKIAVLIVYVDDIILSGDDHAEIIQLKKRMGDEFKIKDLENLKYF 373
           Q HS+ + F K++       ++VYVDDII+  ++ A + +LK ++   FK++DL  LKYF
Sbjct: 261 QSHSDHTYFLKITAT-LFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYF 320

Query: 374 LRMEVAKSKEGIFVSQRKYSLDSLTKTSMWGYRPADTPIE 414
           L +E+A+S  GI + QRKY+LD L +T + G +P+  P++
Sbjct: 321 LGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMD 359

[Close]
BLAST of Cucsa.079690 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 8.8e-09
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 1 

Query: 334 LIVYVDDIILSGDDHAEIIQLKKRMGDEFKIKDLENLKYFLRMEVAKSKEGIFVSQRKYS 393
           L++YVDDI+L+G  +  +  L  ++   F +KDL  + YFL +++     G+F+SQ KY+
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 394 LDSLTKTSMWGYRPADTPIEFNYELGNSCDKIP 427
              L    M   +P  TP+        S  K P
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP 95

[Close]
BLAST of Cucsa.079690 vs. NCBI nr
Match: gi|659081882|ref|XP_008441559.1| (PREDICTED: uncharacterized protein LOC103485652 isoform X2 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 77/108 (71.30%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 136 SIFVKFDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHM 195
           S++ KFDTNLLFST SHPQ D QTEVTNRTLG+ IRCLS DKP+QW LTLPQAEFTFNHM
Sbjct: 203 SLWKKFDTNLLFSTTSHPQTDGQTEVTNRTLGSLIRCLSRDKPRQWDLTLPQAEFTFNHM 262

Query: 196 ANRSAGKSPFEVVYTSLPRVTFDLAHLPSVVVVDVVSDLVMVYLHKSR 244
            NRS  KS FEVVYT LP VTFDLAHLPSVV V + ++ +   + K R
Sbjct: 263 ENRSTRKSLFEVVYTRLPWVTFDLAHLPSVVDVSMEAEAMADCISKPR 310

[Close]
BLAST of Cucsa.079690 vs. NCBI nr
Match: gi|595946584|ref|XP_007216161.1| (hypothetical protein PRUPE_ppa015308mg, partial [Prunus persica])

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31
Identity = 87/217 (40.09%), Postives = 115/217 (53.00%), Query Frame = 1 

Query: 115  IWEDLAMDFVLGLPRTQRGHDSIFVKFDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLS 174
            IW+DLAMDFVLGLPRTQRG DS+FV  D    FS  +       TEVTN TLGN +R + 
Sbjct: 937  IWQDLAMDFVLGLPRTQRGVDSVFVVVDR---FSKMA-------TEVTNWTLGNMVRSVC 996

Query: 175  GDKPKQWVLTLPQAEFTFNHMANRSAGKSPFEVVYTSLPRVTFDLAHLPS---------- 234
            G+KPKQW   LP  EF +N   + + GKSPF +VYT++P    DL   P           
Sbjct: 997  GEKPKQWDYALPHVEFAYNSAVHSATGKSPFSIVYTAIPNHIVDLVKFPRGQQTSVAAKN 1056

Query: 235  -----VVVVDVV--------------------------SDLVMVYLHKSRLPAGHHSKMT 291
                 V V D V                           D VM++L K R P G +SK+ 
Sbjct: 1057 LAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKERFPVGTYSKLK 1116

[Close]
BLAST of Cucsa.079690 vs. NCBI nr
Match: gi|595946584|ref|XP_007216161.1| (hypothetical protein PRUPE_ppa015308mg, partial [Prunus persica])

HSP 1 Score: 35.0 bits (79), Expect = 3.8e+02
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 1 

Query: 79  KCEQQGHLSNECPQRR-ALTIEEGQEDDDSDD 110
           +C++ GH SN CP+R+ A  IEE  ED++ D+
Sbjct: 321 RCQKPGHRSNVCPERKQANFIEEVDEDEEKDE 352


HSP 2 Score: 141.4 bits (355), Expect = 3.8e-30
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 1 

Query: 141  FDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSA 200
            F T+L FS+A HPQ D QTEV NR+LG+ +RCL GDK   W L LP AEF +N+ ANR+ 
Sbjct: 1152 FGTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLILPVAEFAYNNSANRTT 1211

Query: 201  GKSPFEVVYTSLPRVTFDLAHLP--------SVVVVDVV----SDLVMVYLHKSRLPAGH 260
            GKSPFE+VY  +PR   DLA LP        +    + +     D VMV +   R P   
Sbjct: 1212 GKSPFEIVYGVMPRPPIDLAPLPIDACPSESATTFAEHIHFQEGDYVMVRVCPERFPKHS 1271

Query: 261  HSKMTNKCIGLFQILERLGPSAYQLDLPATMRINSSFNVSDLSPY 294
              K+  + +GL++IL +LG +AY ++LP+ + I+  FNVSDL PY
Sbjct: 1272 FKKLHARSMGLYRILRKLGANAYLVELPSDVHISPIFNVSDLFPY 1316

[Close]
BLAST of Cucsa.079690 vs. NCBI nr
Match: gi|596085602|ref|XP_007221295.1| (hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica])

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-02
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 

Query: 114  TIWEDLAMDFVLGLPRTQRGHDSIFVKFDTNLLFSTASH 153
            T W+DL+MDFVLGLP+T RGHDSI V  D    FS  +H
Sbjct: 1066 TPWKDLSMDFVLGLPKTARGHDSILVVVDR---FSKMAH 1101


HSP 2 Score: 137.9 bits (346), Expect = 4.2e-29
Identity = 90/250 (36.00%), Postives = 121/250 (48.40%), Query Frame = 1 

Query: 115  IWEDLAMDFVL-----------------------GLPRT-QRGHDSIFVK---------F 174
            IW+DLAMDFVL                       G+P +     D+ F+          F
Sbjct: 1095 IWQDLAMDFVLACKKIADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLF 1154

Query: 175  DTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSAG 234
             T L  S+ +HPQ D QTEVTNRTLGN +R + G+KPKQW   LPQAEF +N   + + G
Sbjct: 1155 GTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQAEFAYNSAVHSATG 1214

Query: 235  KSPFEVVYTSLPRVTFDLAHLPS---------------VVVVDVV--------------- 291
            KSPF +VYT+ P    DL  LP                V V D V               
Sbjct: 1215 KSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVKQKLEQTNAKYKAAA 1274

[Close]
BLAST of Cucsa.079690 vs. NCBI nr
Match: gi|596048477|ref|XP_007220384.1| (hypothetical protein PRUPE_ppa021778mg [Prunus persica])

HSP 1 Score: 36.6 bits (83), Expect = 1.3e+02
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1 

Query: 79  KCEQQGHLSNECPQRR-ALTIEEGQEDDDSDD 110
           +C++ GH SN CP+R+ A  IEE  ED+++D+
Sbjct: 357 RCQKPGHRSNVCPERKQANFIEEADEDEENDE 388


HSP 2 Score: 137.5 bits (345), Expect = 5.5e-29
Identity = 73/158 (46.20%), Postives = 98/158 (62.03%), Query Frame = 1 

Query: 141  FDTNLLFSTASHPQADAQTEVTNRTLGNPIRCLSGDKPKQWVLTLPQAEFTFNHMANRSA 200
            F T+L FS+A HPQ D QTEV NR+LG+ +RCL GDK   W L LP AEF +N+ ANR+ 
Sbjct: 1198 FSTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLILPVAEFAYNNSANRTI 1257

Query: 201  GKSPFEVVYTSLPRVTFDLAHLPSVVVVDVVSDLVMVY---LHKSRLPAGHHSKMTNKCI 260
            GKSPFE+VY  +PR   DLA LP        +     +   LH+ R P     K+  + +
Sbjct: 1258 GKSPFEIVYGVMPRPPIDLAPLPIDARPSESTTTFAEHIRRLHEERFPKHSFKKLHARSM 1317

Query: 261  GLFQILERLGPSAYQLDLPATMRINSSFNVSDLSPYHG 296
            G ++IL +LG +AY ++LP+ + I+  FNVSDL P  G
Sbjct: 1318 GPYRILRKLGANAYLVELPSDVHISLIFNVSDLFPCRG 1355

The following BLAST results are available for this feature:
BLAST of Cucsa.079690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YG31B_YEAST1.6e-0737.04Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
M810_ARATH1.6e-0732.26Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
POLX_TOBAC5.9e-0726.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Cucsa.079690 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XE48_PRUPE2.4e-3140.09Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015308mg PE=4 S... [more]
M5XE48_PRUPE2.7e+0246.88Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015308mg PE=4 S... [more]
M5X976_PRUPE1.8e-0261.54Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024499mg PE=4 S... [more]
M5XJ91_PRUPE9.2e+0146.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021778mg PE=4 SV=1[more]
M5W531_PRUPE7.2e-2835.93Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026856mg PE=4 SV=1[more]
BLAST of Cucsa.079690 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.6e-1540.00 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.18.8e-0932.26ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
BLAST of Cucsa.079690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081882|ref|XP_008441559.1|1.7e-3371.30PREDICTED: uncharacterized protein LOC103485652 isoform X2 [Cucumis melo][more]
gi|595946584|ref|XP_007216161.1|3.4e-3140.09hypothetical protein PRUPE_ppa015308mg, partial [Prunus persica][more]
gi|595946584|ref|XP_007216161.1|3.8e+0246.88hypothetical protein PRUPE_ppa015308mg, partial [Prunus persica][more]
gi|596085602|ref|XP_007221295.1|2.6e-0261.54hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica][more]
gi|596048477|ref|XP_007220384.1|1.3e+0246.88hypothetical protein PRUPE_ppa021778mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0043167 ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.079690.1Cucsa.079690.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 140..211
score: 5.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 115..212
score: 5.88
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 314..413
score: 6.4
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 115..293
score: 2.1
NoneNo IPR availablePANTHERPTHR24559:SF174SUBFAMILY NOT NAMEDcoord: 115..293
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.079690CsaV3_7G024500Cucumber (Chinese Long) v3cgycucB080
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.079690Melon (DHL92) v3.6.1cgymedB083
Cucsa.079690Silver-seed gourdcarcgyB0324
Cucsa.079690Watermelon (97103) v2cgywmbB078
Cucsa.079690Wax gourdcgywgoB092
Cucsa.079690Cucurbita maxima (Rimu)cgycmaB0133
Cucsa.079690Cucurbita maxima (Rimu)cgycmaB0139
Cucsa.079690Cucurbita maxima (Rimu)cgycmaB0142
Cucsa.079690Cucurbita moschata (Rifu)cgycmoB0130
Cucsa.079690Cucurbita moschata (Rifu)cgycmoB0135
Cucsa.079690Cucurbita moschata (Rifu)cgycmoB0137
Cucsa.079690Wild cucumber (PI 183967)cgycpiB079
Cucsa.079690Cucumber (Chinese Long) v2cgycuB076
Cucsa.079690Melon (DHL92) v3.5.1cgymeB083
Cucsa.079690Melon (DHL92) v3.5.1cgymeB085
Cucsa.079690Watermelon (Charleston Gray)cgywcgB081
Cucsa.079690Watermelon (97103) v1cgywmB083
Cucsa.079690Cucurbita pepo (Zucchini)cgycpeB0137
Cucsa.079690Cucurbita pepo (Zucchini)cgycpeB0139
Cucsa.079690Bottle gourd (USVL1VR-Ls)cgylsiB081