Cucsa.079670 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.079670
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold00793 : 2541465 .. 2542562 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTATATCAGTTGGATGTTAATGTGTTCTTGAATCGAGGCCTAGAAGAGGAAGTCCATATGAGCCCCCCAAAGTTTGAAGCCCAATTCGATCATCAGGTTTGTAAAGTTAAGAAATCTTTATATGGACTGAAACAATCACCAAGAGCATGGTTTGATAGGTTTACTACCATAGTCAAGTCCCAAGGGTACAATTTGGGGCACTCTGACCACACTTTGTTTATAAAAGTCTCCAAGGCTAGGAAGATTACAGTGTTGATTGTTTATGTTGATGACATCATTTTATCTGGGGATGACATTGCTGAGATCATCCAATTGAAAAAGAGGTTGGTGATGACTTTGAAATCAAAAACTTGAAAAATCTAAAATATTTTCTTGGGATGAGGTAGCTTGATCCAAAGAAGGTATCTCCATATCTCAGAGGAAGTATACCCTTGATTTGTTAACCGAGTCACTGAGACAGGTATGCTTGGATGTCGTTCTGCTGATACTCCCATTGAATTCAACTGCAAACTGGAAAATTAGGGTGATAAAGTTCTAGTTGATAAAGAACAATATCAGCGGCTTTTGAGAAAGTTGATTTACTTGTCACATACTCGACCAAATATTTCCTATGTTGAGTGCCATTAGTTCATGCAGGCTCCGTATGAGAAACGCATGAAGGCAGGTAACAAAATTTTGAGGTATTTAAAAAAATCCCTAGTAAAGGGTTGATGTTGAAGAAGATAGATAGGAAAGCTATTAAGGCGAGACCTGTACTGACTCTGACTAGGCCGAGTCTGTTGTTGATAAGAAATCCACTTTCGGTTACTGTACCTTTGTATAGGGAAATCTCGTAACTCGGAGAAGTAAGAAGCAAGAGGTTGTGGCCAAAAGCAGTGTTGAGGCGGGATTGTGGCTATGAGTTTGGGGATATGTGAAGAAATTTGGCCCTTGAAAGTTTTATCTGACCTTCATCAGGATTGCGAGGTGCTGATGAAATTATTTTGTAATAATAAGGCAACTATTAGCATCGCCAACAATCCAGTTCAACATGATAGAATTAAACATCTGGAGATTGATCGACACTTTATTAAAGAAAAACTGGACAATGATTAG

mRNA sequence

cctctatatcagttggatgttaatgtgttcttgaatcgaggcctagaagaggaagtccatatgagccccccaaagtttgaagcccaattcgatcatcaggtttgtaaagttaagaaatctttatatggactgaaacaatcaccaagagcatggtttgataggtttactaccatagtcaagtcccaagggtacaatttggggcactctgaccacactttgtttataaaagtctccaaggctaggaagattacagtgttgattgtttatgttgatgacatcattttatctggggatgacattgctgagatcatccaattgaaaaagagtttggggatatgtgaagaaatttggcccttgaaagttttatctgaccttcatcaggattgcgaggtgctgatgaaattattttgtaataataaggcaactattagcatcgccaacaatccagttcaacatgatagaattaaacatctggagattgatcgacactttattaaagaaaaactggacaatgattag

Coding sequence (CDS)

CCTCTATATCAGTTGGATGTTAATGTGTTCTTGAATCGAGGCCTAGAAGAGGAAGTCCATATGAGCCCCCCAAAGTTTGAAGCCCAATTCGATCATCAGGTTTGTAAAGTTAAGAAATCTTTATATGGACTGAAACAATCACCAAGAGCATGGTTTGATAGGTTTACTACCATAGTCAAGTCCCAAGGGTACAATTTGGGGCACTCTGACCACACTTTGTTTATAAAAGTCTCCAAGGCTAGGAAGATTACAGTGTTGATTGTTTATGTTGATGACATCATTTTATCTGGGGATGACATTGCTGAGATCATCCAATTGAAAAAGAGTTTGGGGATATGTGAAGAAATTTGGCCCTTGAAAGTTTTATCTGACCTTCATCAGGATTGCGAGGTGCTGATGAAATTATTTTGTAATAATAAGGCAACTATTAGCATCGCCAACAATCCAGTTCAACATGATAGAATTAAACATCTGGAGATTGATCGACACTTTATTAAAGAAAAACTGGACAATGATTAG

Protein sequence

PLYQLDVNVFLNRGLEEEVHMSPPKFEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTIVKSQGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLDND*
Homology
[Close]
BLAST of Cucsa.079670 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-17
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 1 

Query: 4    QLDVNV-FLNRGLEEEVHMSPPK-FE-AQFDHQVCKVKKSLYGLKQSPRAWFDRFTTIVK 63
            QLDV   FL+  LEEE++M  P+ FE A   H VCK+ KSLYGLKQ+PR W+ +F + +K
Sbjct: 920  QLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMK 979

Query: 64   SQGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLK---------KSLG 123
            SQ Y   +SD  ++ K        +L++YVDD+++ G D   I +LK         K LG
Sbjct: 980  SQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1039

Query: 124  ICEEIWPLKVLSD 125
              ++I  +K++ +
Sbjct: 1040 PAQQILGMKIVRE 1052

[Close]
BLAST of Cucsa.079670 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-09
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 1 

Query: 2    LYQLDVNV-FLNRGLEEEVHMSPPKFEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTIVK 61
            ++Q+DV   FLN  L+EE++M  P+  +     VCK+ K++YGLKQ+ R WF+ F   +K
Sbjct: 998  VHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALK 1057

Query: 62   SQGYNLGHSDHTLFI--KVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSL 111
               +     D  ++I  K +    I VL+ YVDD++++  D+  +   K+ L
Sbjct: 1058 ECEFVNSSVDRCIYILDKGNINENIYVLL-YVDDVVIATGDMTRMNNFKRYL 1108


HSP 2 Score: 48.5 bits (114), Expect = 8.4e-05
Identity = 22/59 (37.29%), Postives = 38/59 (64.41%), Query Frame = 1 

Query: 114  EEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLDND 173
            E +W   +L+ ++   E  +K++ +N+  ISIANNP  H R KH++I  HF +E++ N+
Sbjct: 1307 EALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNN 1365

[Close]
BLAST of Cucsa.079670 vs. TrEMBL
Match: A0A151SWT9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_014699 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.1e-34
Identity = 89/186 (47.85%), Postives = 116/186 (62.37%), Query Frame = 1 

Query: 8   NVFLNRGLEEEVHMSPPKFEAQFDH--QVCKVKKSLYGLKQSPRAWFDRFTTIVKSQGYN 67
           N FL+  L EEV+M  P    ++     VCK+KK LYGLKQSPRAWF RFT  +KS GY 
Sbjct: 2   NAFLHGDLMEEVYMDLPPGIPKYSSIPMVCKLKKFLYGLKQSPRAWFGRFTKSMKSFGYT 61

Query: 68  LGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI--------- 127
             +SDHTLF+K ++  KITVLI+YVDD+I++ +D  EI  L+KSL    +I         
Sbjct: 62  QSNSDHTLFLKNNQG-KITVLIIYVDDMIVTRNDSDEISSLQKSLASEFDIKQLGDLKYF 121

Query: 128 ------------WPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHF 171
                       W   +L D+  + +  MKL C+NK+ I IANNPVQHDR KH++IDRHF
Sbjct: 122 LGIEVARSKHALWIKNLLKDIGYEQKDEMKLNCDNKSAIQIANNPVQHDRTKHVKIDRHF 181

[Close]
BLAST of Cucsa.079670 vs. TrEMBL
Match: A5AYJ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041073 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 1 

Query: 1    PLYQLDV-NVFLNRGLEEEVHMSPPK-FEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTI 60
            PL QLDV N FLN  LEEEV+M PP  F+  F  +VCK+KKSLYGLKQSPRAWF+RFT  
Sbjct: 1098 PLQQLDVKNAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLYGLKQSPRAWFERFTQF 1157

Query: 61   VKSQGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI 117
            VK+QGY    SDHT+FIK S   KI +LIVYVDDIIL+GD + E+ +LKKSL +  EI
Sbjct: 1158 VKNQGYVQAQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEI 1215

[Close]
BLAST of Cucsa.079670 vs. TrEMBL
Match: A5AYJ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041073 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 111  GICEEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLD 170
            G+CE +W  K+L +L +  E+ MKL+C+NKA ISIA+NPVQHDR KH+EIDRHFIKEKL+
Sbjct: 1402 GVCEILWLKKILEELKRPLEMPMKLYCDNKAAISIAHNPVQHDRTKHVEIDRHFIKEKLE 1461


HSP 2 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = 1 

Query: 4   QLDV-NVFLNRGLEEEVHM-SPPKFEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTIVKS 63
           QLDV N FLN  LEEEV+M SPP FE +FD +VCK+KKSLYGLKQSPR WF++FT  VK+
Sbjct: 387 QLDVKNAFLNGDLEEEVYMASPPGFEEKFDSKVCKLKKSLYGLKQSPRVWFEKFTHSVKN 446

Query: 64  QGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEIWPLKV 123
           QGY    SDHT+F+K SK  K+ VLIVYVDDIIL+G+D+AE+ QLK+ L    EI  L  
Sbjct: 447 QGYVQVQSDHTMFMKHSKDGKVAVLIVYVDDIILTGNDVAEMEQLKRRLASEFEIKDLGT 506

[Close]
BLAST of Cucsa.079670 vs. TrEMBL
Match: W9REE0_9ROSA (Copia protein OS=Morus notabilis GN=L484_026199 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 111 GICEEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLD 170
           G+CE +W  ++L +L +  E+ MKL+C+NKA ISIA+NPVQHDR KH+EIDRHFIKEKL+
Sbjct: 634 GVCEILWIERILDELRRPVEMPMKLYCDNKAAISIAHNPVQHDRTKHVEIDRHFIKEKLE 693


HSP 2 Score: 139.4 bits (350), Expect = 4.0e-30
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 1 

Query: 1   PLYQLDVN-VFLNRGLEEEVHMSPPK-FEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTI 60
           PL QLDV   FLN  LEEEV+M PP  F+  F  +VCK+KKSLYGLKQSPRAWF+R T  
Sbjct: 84  PLQQLDVKXAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLYGLKQSPRAWFERLTQF 143

Query: 61  VKSQGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI 117
           VK+QGY    SDHT+FIK S   KI +LIVYVDDIIL+GD + E+ +LKKSL +  EI
Sbjct: 144 VKNQGYFQAQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEI 201

[Close]
BLAST of Cucsa.079670 vs. TrEMBL
Match: A5BFS0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021511 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-14
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 111 GICEEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLD 170
           G+CE +W  K+L +L    E+ MKL+C+NKA ISIA+NPVQHDR KH+EIDRHFIK+KL+
Sbjct: 388 GVCEILWLKKILEELKIPLEMPMKLYCDNKAAISIAHNPVQHDRTKHVEIDRHFIKDKLE 447


HSP 2 Score: 137.1 bits (344), Expect = 2.0e-29
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 1 

Query: 8   NVFLNRGLEEEVHMSPPK-FEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTIVKSQGYNL 67
           N FLN  LEEEV+M PP  F+  F  +VCK+KKSLYGLKQSPRAWF+RFT  VK+QGY  
Sbjct: 3   NAFLNGNLEEEVYMDPPLGFDEHFGSKVCKLKKSLYGLKQSPRAWFERFTQFVKNQGYVQ 62

Query: 68  GHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI 117
             SDHT+FIK S   KI +LIVYVDDIIL+GD + E+ +LKKSL +  EI
Sbjct: 63  AQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEI 112

[Close]
BLAST of Cucsa.079670 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 1 

Query: 2   LYQLDV-NVFLNRGLEEEVHMS-PPKFEAQFD-----HQVCKVKKSLYGLKQSPRAWFDR 61
           L+QLD+ N FLN  L+EE++M  PP + A+       + VC +KKS+YGLKQ+ R WF +
Sbjct: 190 LHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLK 249

Query: 62  FTTIVKSQGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGIC- 121
           F+  +   G+   HSDHT F+K++    + VL VYVDDII+  ++ A + +LK  L  C 
Sbjct: 250 FSVTLIGFGFVQSHSDHTYFLKITATLFLCVL-VYVDDIIICSNNDAAVDELKSQLKSCF 309


HSP 2 Score: 44.3 bits (103), Expect = 9.0e-05
Identity = 21/55 (38.18%), Postives = 30/55 (54.55%), Query Frame = 1 

Query: 114 EEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEK 169
           E +W  +   +L         LFC+N A I IA N V H+R KH+E D H ++E+
Sbjct: 500 EMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRER 554

[Close]
BLAST of Cucsa.079670 vs. NCBI nr
Match: gi|1012348076|gb|KYP59267.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 153.7 bits (387), Expect = 3.0e-34
Identity = 89/186 (47.85%), Postives = 116/186 (62.37%), Query Frame = 1 

Query: 8   NVFLNRGLEEEVHMSPPKFEAQFDH--QVCKVKKSLYGLKQSPRAWFDRFTTIVKSQGYN 67
           N FL+  L EEV+M  P    ++     VCK+KK LYGLKQSPRAWF RFT  +KS GY 
Sbjct: 2   NAFLHGDLMEEVYMDLPPGIPKYSSIPMVCKLKKFLYGLKQSPRAWFGRFTKSMKSFGYT 61

Query: 68  LGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI--------- 127
             +SDHTLF+K ++  KITVLI+YVDD+I++ +D  EI  L+KSL    +I         
Sbjct: 62  QSNSDHTLFLKNNQG-KITVLIIYVDDMIVTRNDSDEISSLQKSLASEFDIKQLGDLKYF 121

Query: 128 ------------WPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHF 171
                       W   +L D+  + +  MKL C+NK+ I IANNPVQHDR KH++IDRHF
Sbjct: 122 LGIEVARSKHALWIKNLLKDIGYEQKDEMKLNCDNKSAIQIANNPVQHDRTKHVKIDRHF 181

[Close]
BLAST of Cucsa.079670 vs. NCBI nr
Match: gi|147819777|emb|CAN76196.1| (hypothetical protein VITISV_041073 [Vitis vinifera])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 1 

Query: 1    PLYQLDV-NVFLNRGLEEEVHMSPPK-FEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTI 60
            PL QLDV N FLN  LEEEV+M PP  F+  F  +VCK+KKSLYGLKQSPRAWF+RFT  
Sbjct: 1098 PLQQLDVKNAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLYGLKQSPRAWFERFTQF 1157

Query: 61   VKSQGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI 117
            VK+QGY    SDHT+FIK S   KI +LIVYVDDIIL+GD + E+ +LKKSL +  EI
Sbjct: 1158 VKNQGYVQAQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEI 1215

[Close]
BLAST of Cucsa.079670 vs. NCBI nr
Match: gi|147819777|emb|CAN76196.1| (hypothetical protein VITISV_041073 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 9.0e-15
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 111  GICEEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLD 170
            G+CE +W  K+L +L +  E+ MKL+C+NKA ISIA+NPVQHDR KH+EIDRHFIKEKL+
Sbjct: 1402 GVCEILWLKKILEELKRPLEMPMKLYCDNKAAISIAHNPVQHDRTKHVEIDRHFIKEKLE 1461


HSP 2 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = 1 

Query: 4   QLDV-NVFLNRGLEEEVHM-SPPKFEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTIVKS 63
           QLDV N FLN  LEEEV+M SPP FE +FD +VCK+KKSLYGLKQSPR WF++FT  VK+
Sbjct: 387 QLDVKNAFLNGDLEEEVYMASPPGFEEKFDSKVCKLKKSLYGLKQSPRVWFEKFTHSVKN 446

Query: 64  QGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEIWPLKV 123
           QGY    SDHT+F+K SK  K+ VLIVYVDDIIL+G+D+AE+ QLK+ L    EI  L  
Sbjct: 447 QGYVQVQSDHTMFMKHSKDGKVAVLIVYVDDIILTGNDVAEMEQLKRRLASEFEIKDLGT 506

[Close]
BLAST of Cucsa.079670 vs. NCBI nr
Match: gi|703104672|ref|XP_010098067.1| (Copia protein [Morus notabilis])

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 111 GICEEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLD 170
           G+CE +W  ++L +L +  E+ MKL+C+NKA ISIA+NPVQHDR KH+EIDRHFIKEKL+
Sbjct: 634 GVCEILWIERILDELRRPVEMPMKLYCDNKAAISIAHNPVQHDRTKHVEIDRHFIKEKLE 693


HSP 2 Score: 139.4 bits (350), Expect = 5.8e-30
Identity = 74/118 (62.71%), Postives = 87/118 (73.73%), Query Frame = 1 

Query: 1   PLYQLDVN-VFLNRGLEEEVHMSPPK-FEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTI 60
           PL QLDV   FLN  LEEEV+M PP  F+  F  +VCK+KKSLYGLKQSPRAWF+R T  
Sbjct: 84  PLQQLDVKXAFLNGNLEEEVYMDPPPGFDEHFGSKVCKLKKSLYGLKQSPRAWFERLTQF 143

Query: 61  VKSQGYNLGHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI 117
           VK+QGY    SDHT+FIK S   KI +LIVYVDDIIL+GD + E+ +LKKSL +  EI
Sbjct: 144 VKNQGYFQAQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEI 201

[Close]
BLAST of Cucsa.079670 vs. NCBI nr
Match: gi|147790213|emb|CAN65603.1| (hypothetical protein VITISV_021511 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 5.8e-14
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 111 GICEEIWPLKVLSDLHQDCEVLMKLFCNNKATISIANNPVQHDRIKHLEIDRHFIKEKLD 170
           G+CE +W  K+L +L    E+ MKL+C+NKA ISIA+NPVQHDR KH+EIDRHFIK+KL+
Sbjct: 388 GVCEILWLKKILEELKIPLEMPMKLYCDNKAAISIAHNPVQHDRTKHVEIDRHFIKDKLE 447


HSP 2 Score: 137.1 bits (344), Expect = 2.9e-29
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 1 

Query: 8   NVFLNRGLEEEVHMSPPK-FEAQFDHQVCKVKKSLYGLKQSPRAWFDRFTTIVKSQGYNL 67
           N FLN  LEEEV+M PP  F+  F  +VCK+KKSLYGLKQSPRAWF+RFT  VK+QGY  
Sbjct: 3   NAFLNGNLEEEVYMDPPLGFDEHFGSKVCKLKKSLYGLKQSPRAWFERFTQFVKNQGYVQ 62

Query: 68  GHSDHTLFIKVSKARKITVLIVYVDDIILSGDDIAEIIQLKKSLGICEEI 117
             SDHT+FIK S   KI +LIVYVDDIIL+GD + E+ +LKKSL +  EI
Sbjct: 63  AQSDHTMFIKHSNDGKIAILIVYVDDIILTGDHVTEMDRLKKSLALEFEI 112

The following BLAST results are available for this feature:
BLAST of Cucsa.079670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC4.3e-1739.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME3.3e-0933.93Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
BLAST of Cucsa.079670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151SWT9_CAJCA2.1e-3447.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A5AYJ3_VITVI1.6e-3164.41Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041073 PE=4 SV=1[more]
A5AYJ3_VITVI6.3e-1565.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041073 PE=4 SV=1[more]
W9REE0_9ROSA1.4e-1463.33Copia protein OS=Morus notabilis GN=L484_026199 PE=4 SV=1[more]
A5BFS0_VITVI4.1e-1463.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021511 PE=4 SV=1[more]
BLAST of Cucsa.079670 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.11.1e-1841.86 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
BLAST of Cucsa.079670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012348076|gb|KYP59267.1|3.0e-3447.85Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
gi|147819777|emb|CAN76196.1|2.4e-3164.41hypothetical protein VITISV_041073 [Vitis vinifera][more]
gi|147819777|emb|CAN76196.1|9.0e-1565.00hypothetical protein VITISV_041073 [Vitis vinifera][more]
gi|703104672|ref|XP_010098067.1|2.0e-1463.33Copia protein [Morus notabilis][more]
gi|147790213|emb|CAN65603.1|5.8e-1463.33hypothetical protein VITISV_021511 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043167 ion binding
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.079670.1Cucsa.079670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..111
score: 5.8
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..110
score: 1.0
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 1..110
score: 1.0
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 24..107
score: 1.