Cucsa.079430 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079430
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon 297 family
Location	scaffold00793 : 2274085 .. 2274728 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCGTCAGACTGTGGAGAACCATGATGACACTACCGGTATTAGCAATGCCAGATTTCAGCATTCCCTTTGAAATTGAAACGGATGCTTCGGGCTATGGTTTAGGTGCTGTGTTGATACAAAACCATAGGCCTATTGCTTATTATAGCCACACTCTAGCAGTTAGAGATAGAGTTAAACCTGTTTATGAACGGGAATTGATGGCTGTAGTAATGGCAGTACTGAGGTGGCGACCCTATTTGCTGGGGAAGAGATTCAAGGTAAAAACTGATCAACAGTCATTAAAATTCCTGCTGGAACAACGGGTGATACAACCCCAGTACCAAAAATGGATATCTAAGCTTTTAGGATATTCGTTTGAGGTAATATATAAACCAGGATTAGAAAATAAGGCTGCTGATGCATTGTCTAGAGTACCACCTACTGTCCATCTGAATCATTTGATTGCTCCGAATATAATTGATGTGGCAATGATTAAAGAAGAGGTTAATCAAGATGAGAAGTTTAAGAAGATCAGAGAAGAATTAGCAGAAAAAGGTGAGGAGCAGACCAGTAAATACTCTATGAAGCAGGGGATGTTAATGTGTAAGAATCTAATGGTAGTTTCTAAAACTTCTAAACCGATTCCTATGATCTTAGGTTAG

mRNA sequence

ctttcgtcagactgtggagaaccatgatgacactaccggtattagcaatgccagatttcagcattccctttgaaattgaaacggatgcttcgggctatggtttaggtgctgtgttgatacaaaaccataggcctattgcttattatagccacactctagcagttagagatagagttaaacctgtttatgaacgggaattgatggctgtagtaatggcagtactgaggtggcgaccctatttgctggggaagagattcaaggtaaaaactgatcaacagtcattaaaattcctgctggaacaacgggtgatacaaccccagtaccaaaaatggatatctaagcttttaggatattcgtttgaggtaatatataaaccaggattagaaaataaggctgctgatgcattgtctagagtaccacctactgtccatctgaatcatttgattgctccgaatataattgatgtggcaatgattaaagaagaggttaatcaagatgagaagtttaagaagatcagagaagaattagcagaaaaaggtgaggagcagaccagtaaatactctatgaagcaggggatgttaatgtgtaagaatctaatggtagtttctaaaacttctaaaccgattcctatgatcttaGGTTAG

Coding sequence (CDS)

CTTTCGTCAGACTGTGGAGAACCATGATGACACTACCGGTATTAGCAATGCCAGATTTCAGCATTCCCTTTGAAATTGAAACGGATGCTTCGGGCTATGGTTTAGGTGCTGTGTTGATACAAAACCATAGGCCTATTGCTTATTATAGCCACACTCTAGCAGTTAGAGATAGAGTTAAACCTGTTTATGAACGGGAATTGATGGCTGTAGTAATGGCAGTACTGAGGTGGCGACCCTATTTGCTGGGGAAGAGATTCAAGGTAAAAACTGATCAACAGTCATTAAAATTCCTGCTGGAACAACGGGTGATACAACCCCAGTACCAAAAATGGATATCTAAGCTTTTAGGATATTCGTTTGAGGTAATATATAAACCAGGATTAGAAAATAAGGCTGCTGATGCATTGTCTAGAGTACCACCTACTGTCCATCTGAATCATTTGATTGCTCCGAATATAATTGATGTGGCAATGATTAAAGAAGAGGTTAATCAAGATGAGAAGTTTAAGAAGATCAGAGAAGAATTAGCAGAAAAAGGTGAGGAGCAGACCAGTAAATACTCTATGAAGCAGGGGATGTTAATGTGTAAGAATCTAATGGTAGTTTCTAAAACTTCTAAACCGATTCCTATGATCTTAGGTTAG

Protein sequence

FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKPVYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFEVIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGEEQTSKYSMKQGMLMCKNLMVVSKTSKPIPMILG*

Homology

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BLAST of Cucsa.079430 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-20
Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 1


Query: 1   FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
           F +L   ++  P+L +PDF   F + TDAS   LGAVL QN  PI++ S TL   +    
Sbjct: 486 FEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYS 545

Query: 61  VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
             E+EL+A+V A   +R YLLG++F + +D Q L++L   +    + ++W  +L  Y F+
Sbjct: 546 AIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFK 605

Query: 121 VIYKPGLENKAADALSRV 139
           + Y  G EN  ADALSR+
Sbjct: 606 IDYIKGKENSVADALSRI 623

[Close]

BLAST of Cucsa.079430 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-20
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 1


Query: 13  VLAMPDFSIPFEIETDASGYGLGAVLIQNH----RPIAYYSHTLAVRDRVKPVYERELMA 72
           +LA P F+ PF + TDAS + +GAVL Q+     RPIAY S +L   +      E+E++A
Sbjct: 425 ILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLA 484

Query: 73  VVMAVLRWRPYLLGK-RFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFEVIYKPGL 132
           ++ ++   R YL G    KV TD Q L F L  R    + ++W +++  Y+ E+IYKPG 
Sbjct: 485 IIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGK 544

Query: 133 ENKAADALSRVPPTVH 144
            N  ADALSR+PP ++
Sbjct: 545 SNVVADALSRIPPQLN 560

[Close]

BLAST of Cucsa.079430 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 51/127 (40.16%), Postives = 75/127 (59.06%), Query Frame = 1


Query: 12  PVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKPVYERELMAVVM 71
           P+L +PDF+  F + TDAS   LGAVL Q+  P++Y S TL   +      E+EL+A+V 
Sbjct: 498 PILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVW 557

Query: 72  AVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFEVIYKPGLENKA 131
           A   +R YLLG+ F++ +D Q L +L   +    +  +W  KL  + F++ Y  G EN  
Sbjct: 558 ATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCV 617

Query: 132 ADALSRV 139
           ADALSR+
Sbjct: 618 ADALSRI 624

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BLAST of Cucsa.079430 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-18
Identity = 60/152 (39.47%), Postives = 84/152 (55.26%), Query Frame = 1


Query: 13  VLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKPVYERELMAVVMA 72
           +L  PDF  PF++ TDAS  G+GAVL Q  RPI   S TL   ++     EREL+A+V A
Sbjct: 485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWA 544

Query: 73  VLRWRPYLLGKR-FKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFEVIYKPGLENKA 132
           + + + +L G R   + TD Q L F +  R    + ++W S +  ++ +V YKPG EN  
Sbjct: 545 LGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFV 604

Query: 133 ADALSRVPPTVHLNHLIAPNIIDVAMIKEEVN 164
           ADALSR     +LN L      D A I  E++
Sbjct: 605 ADALSR----QNLNALQNEPQSDAATIHSELS 632

[Close]

BLAST of Cucsa.079430 vs. Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 65/188 (34.57%), Postives = 93/188 (49.47%), Query Frame = 1


Query: 1   FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHR----PIAYYSHTLAVRD 60
           F+ L   ++   +L  PDFS  F I TDAS    GAVL QNH     P+AY S      +
Sbjct: 594 FIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGE 653

Query: 61  RVKPVYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLG 120
             K   E+EL A+  A++ +RPY+ GK F VKTD + L +L        +  +   +L  
Sbjct: 654 SNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEE 713

Query: 121 YSFEVIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMI----------KEEVNQDE 175
           Y+F V Y  G +N  ADALSR+  T+     I  NI+ V             KE+++  +
Sbjct: 714 YNFTVEYLKGKDNHVADALSRI--TIKELKDITGNILKVTTRFQSRQKSCAGKEQLDLQK 773

[Close]

BLAST of Cucsa.079430 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 109/212 (51.42%), Postives = 150/212 (70.75%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L  TM T+PVLA+P+FS  F +E DASGYGLG VL+Q+HRP+AY+S  L  R+R K 
Sbjct: 1512 FQKLKTTMTTIPVLALPNFSQLFIVEMDASGYGLGTVLMQSHRPVAYFSQVLTARERQKS 1571

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            +YERELMA+V+AV +WR YLLG+ F V+TDQ SLKFLLEQR++   YQKW++KL GY FE
Sbjct: 1572 IYERELMAIVLAVQKWRHYLLGRHFIVRTDQSSLKFLLEQRIVNESYQKWVAKLFGYDFE 1631

Query: 121  VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGE 180
            + ++PG ENKAADALSR+P ++ L  L+ P+ ID  +I  +V  D    KI++ L     
Sbjct: 1632 IQFRPGXENKAADALSRIPISMELXALMVPSRIDTXLISSQVEADPHLXKIKQRLL-XDP 1691

Query: 181  EQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
            +   +YS+  G+L+ K  +V+ K S  +P +L
Sbjct: 1692 DAYPRYSLDHGILLYKGRLVLPKASPLVPALL 1722

[Close]

BLAST of Cucsa.079430 vs. TrEMBL
Match: A0A087G3S6_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.7e-52
Identity = 110/212 (51.89%), Postives = 150/212 (70.75%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L + M T+PVLA+ DF+  F +E+DASG GLGAVL+Q+ RP+AY+S  L  R R+K 
Sbjct: 915  FQKLKKAMSTVPVLALVDFTEQFVVESDASGTGLGAVLMQSQRPLAYFSQALTERQRLKS 974

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            VYERELMA+V A+ +WR YLLG++F V+TDQ+SLKFLLEQR I  +YQKW++KLLG+ FE
Sbjct: 975  VYERELMAIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQREINMEYQKWLTKLLGFDFE 1034

Query: 121  VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGE 180
            + YKPGLENKAADALSR    + L  L  P  I +  I  EV+ D   +K++EE+ +   
Sbjct: 1035 IQYKPGLENKAADALSRKDMALQLCALSIPAAIQLEQINTEVDNDPDLRKLKEEVLQDAA 1094

Query: 181  EQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
               S++S+ QG L+ K  +VV   S+ + +IL
Sbjct: 1095 SH-SEFSVVQGRLLRKGKLVVPAQSRLVNVIL 1125

[Close]

BLAST of Cucsa.079430 vs. TrEMBL
Match: A0A087HFW3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G074100 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 7.9e-52
Identity = 111/212 (52.36%), Postives = 150/212 (70.75%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L + M T+PVLA+ DF+  F +E+DASG GLGAVL+Q  RP+AY+S  L  R R+K 
Sbjct: 909  FQQLKKAMSTVPVLALVDFTEQFVVESDASGTGLGAVLMQQQRPLAYFSQALTERQRLKS 968

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            VYERELMA+V A+ +WR YLLG++F V+TDQ+SLKFLLEQR I  +YQKW++KLLG+ FE
Sbjct: 969  VYERELMAIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQREINLEYQKWLTKLLGFDFE 1028

Query: 121  VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGE 180
            + YKPGLENKAADALSR    VH+  L  P  I +A I  EV++D    K+++E+     
Sbjct: 1029 IQYKPGLENKAADALSRKDIAVHMCALSVPAAIQLAHINTEVDKDPDLHKLKQEVL-LDT 1088

Query: 181  EQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
               S++S+ QG L+ K  +V+  TS  + +IL
Sbjct: 1089 AAHSEFSVVQGRLLRKGKLVLPATSLLVDVIL 1119

[Close]

BLAST of Cucsa.079430 vs. TrEMBL
Match: A0A087FX63_ARAAL (Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs67613U000200 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.0e-51
Identity = 112/213 (52.58%), Postives = 150/213 (70.42%), Query Frame = 1


Query: 1   FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
           F +L   M+T+PVLA+ DFS  F +E+DASG GLGAVL+QN RPIAYYS  L  R ++K 
Sbjct: 328 FQQLKHAMITVPVLALADFSQLFVVESDASGIGLGAVLMQNQRPIAYYSQALTDRKKLKS 387

Query: 61  VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
           VYERELMA+V A+ RWR YLLG +F VKTDQ+SLKFLLEQ  +  +YQ+W++K+LG++F+
Sbjct: 388 VYERELMAIVFAIQRWRHYLLGMKFLVKTDQKSLKFLLEQHEVNAEYQQWLTKILGFNFD 447

Query: 121 VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREE-LAEKG 180
           ++YKPGLENK ADALSR      L  L  P  I + MI+E V +D   KKI+EE L   G
Sbjct: 448 IMYKPGLENKVADALSRKELLPQLFALSIPAAIQLDMIQEAVERDADLKKIKEEVLLNVG 507

Query: 181 EEQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
                ++S+ QG L+ +  +V+ KTS  + ++L
Sbjct: 508 LH--PEFSVVQGRLLKQGKLVIPKTSPLVGVLL 538

[Close]

BLAST of Cucsa.079430 vs. TrEMBL
Match: A0A087G0A8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.0e-51
Identity = 108/212 (50.94%), Postives = 150/212 (70.75%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L + M T+PVL++ DFS  F +E+DASG GLGAVL+Q  RPIAYYS  L  R ++K 
Sbjct: 858  FQQLKQAMTTVPVLSLVDFSELFVVESDASGIGLGAVLMQQQRPIAYYSQALTDRQKLKS 917

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            VYERELMA+V A+ RWR YLLG++F V+TDQ+SLKFLLEQR +  +YQ+W++K+LG+ F+
Sbjct: 918  VYERELMAIVFAIQRWRHYLLGRKFLVRTDQKSLKFLLEQREVNTEYQQWLTKILGFDFD 977

Query: 121  VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGE 180
            ++YKPGLENKAADALSR      L  L  P  I + MI  EV++D + +KI+EE+    +
Sbjct: 978  IVYKPGLENKAADALSRREVMPQLFALSVPAAIQLEMITAEVDKDAESRKIKEEVLGDVD 1037

Query: 181  EQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
                 YS+ QG L+ +  +V+ K S  + ++L
Sbjct: 1038 AHPG-YSVVQGRLLKQGKLVIPKASPLVGVLL 1068

[Close]

BLAST of Cucsa.079430 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 225.3 bits (573), Expect = 1.0e-55
Identity = 114/218 (52.29%), Postives = 156/218 (71.56%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L + M + PVL +PDF   F +ETDASG+G+GAVL+Q HRPIA++S  L+ R+R+KP
Sbjct: 1123 FRKLKQAMTSAPVLGLPDFREDFVVETDASGFGIGAVLMQKHRPIAFFSQALSERERLKP 1182

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            VYERELMAVV+++ RWR YLLG+ F V TDQ++LKFLLEQR +  +YQ+W++KLLGY F+
Sbjct: 1183 VYERELMAVVLSIQRWRHYLLGRSFLVCTDQKALKFLLEQREVSMEYQRWLTKLLGYDFQ 1242

Query: 121  VIYKPGLENKAADALSRVP------PTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREE 180
            ++Y+PG+ENKAAD LSR+P      PT     +  P  I +  +++E+ +D   K+I  +
Sbjct: 1243 IVYRPGVENKAADGLSRMPHNTILEPTCMGLAITIPRNIQLVEVEKEIGEDSDLKEIVSK 1302

Query: 181  LAEKGEEQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
            L E GE +  KY + QGML  KN +VVSK S  IP IL
Sbjct: 1303 LKE-GETKVGKYHLLQGMLRYKNRLVVSKHSSFIPTIL 1339

[Close]

BLAST of Cucsa.079430 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 85/139 (61.15%), Postives = 115/139 (82.73%), Query Frame = 1


Query: 1   FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
           F +L + M + PVL +PDF   F +ETDASG+G+GAVL+Q HRPIA++S  L+ R+R+KP
Sbjct: 251 FRKLKQAMTSAPVLGLPDFREDFVVETDASGFGIGAVLMQKHRPIAFFSQALSERERLKP 310

Query: 61  VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
           VYERELMAVV+++ RWR YLLG+ F V TDQ++LKFLLEQR +  +YQ+W++KLLGY F+
Sbjct: 311 VYERELMAVVLSIQRWRHYLLGRSFLVCTDQKALKFLLEQREVSMEYQRWLTKLLGYDFQ 370

Query: 121 VIYKPGLENKAADALSRVP 140
           ++Y+PG+ENKAAD LSR+P
Sbjct: 371 IVYRPGVENKAADGLSRMP 389

HSP 2 Score: 224.6 bits (571), Expect = 1.7e-55
Identity = 109/212 (51.42%), Postives = 150/212 (70.75%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L  TM T+PVLA+P+FS  F +E DASGYGLG VL+Q+HRP+AY+S  L  R+R K 
Sbjct: 1512 FQKLKTTMTTIPVLALPNFSQLFIVEMDASGYGLGTVLMQSHRPVAYFSQVLTARERQKS 1571

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            +YERELMA+V+AV +WR YLLG+ F V+TDQ SLKFLLEQR++   YQKW++KL GY FE
Sbjct: 1572 IYERELMAIVLAVQKWRHYLLGRHFIVRTDQSSLKFLLEQRIVNESYQKWVAKLFGYDFE 1631

Query: 121  VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGE 180
            + ++PG ENKAADALSR+P ++ L  L+ P+ ID  +I  +V  D    KI++ L     
Sbjct: 1632 IQFRPGXENKAADALSRIPISMELXALMVPSRIDTXLISSQVEADPHLXKIKQRLL-XDP 1691

Query: 181  EQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
            +   +YS+  G+L+ K  +V+ K S  +P +L
Sbjct: 1692 DAYPRYSLDHGILLYKGRLVLPKASPLVPALL 1722

[Close]

BLAST of Cucsa.079430 vs. NCBI nr
Match: gi|778730254|ref|XP_011659739.1| (PREDICTED: uncharacterized protein LOC105436252 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 113/196 (57.65%), Postives = 140/196 (71.43%), Query Frame = 1


Query: 1   FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
           F +L R M+TLP+LA+PDF+ PFE+ETDASGYG+GAVL+QN RPIA+YSHTLA+RDR KP
Sbjct: 71  FEKLQRAMVTLPILALPDFNAPFEVETDASGYGVGAVLMQNKRPIAFYSHTLALRDRSKP 130

Query: 61  VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
           VYERELMAV                               RVIQPQYQKWI+KLLGYSFE
Sbjct: 131 VYERELMAV-------------------------------RVIQPQYQKWIAKLLGYSFE 190

Query: 121 VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGE 180
           V+YKPGLENKAADALSRVPPT HLN L AP ++D+ +I+EEV++D+  K I   +  + E
Sbjct: 191 VVYKPGLENKAADALSRVPPTAHLNQLTAPTLVDIKVIREEVDKDDYLKDIINRI--QRE 233

Query: 181 EQTSKYSMKQGMLMCK 197
           E+   Y+++QG+L  K
Sbjct: 251 EEVKNYTLQQGILRYK 233

[Close]

BLAST of Cucsa.079430 vs. NCBI nr
Match: gi|729375164|ref|XP_010548864.1| (PREDICTED: uncharacterized protein LOC104820194 [Tarenaya hassleriana])

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 111/218 (50.92%), Postives = 156/218 (71.56%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L + M + P+L + DF   F +ETDASG+G+GAVL+Q HRPIA++S  L+ R+R+KP
Sbjct: 912  FRKLKQAMTSAPILGLLDFRDEFVVETDASGFGIGAVLMQKHRPIAFFSQALSERERLKP 971

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            VYERELM VV+++ RWR YLLG+ F V TDQ++LKFLLEQR +  +YQ+W++KLLGY F+
Sbjct: 972  VYERELMTVVLSIQRWRHYLLGRSFLVCTDQKALKFLLEQREVSMEYQRWLTKLLGYDFQ 1031

Query: 121  VIYKPGLENKAADALSRVP------PTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREE 180
            ++Y+PG+ENKAAD LSR+P      PT     +  P  I +  I++E+ QD+  K+I ++
Sbjct: 1032 IVYRPGMENKAADGLSRMPHNAILEPTCMGLAITIPRNIQLVEIEKEIRQDKDLKEITDK 1091

Query: 181  LAEKGEEQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
            L + GE +  KY + QGML  KN +VVS+ S  IP IL
Sbjct: 1092 LKD-GETKVGKYHLLQGMLRYKNRLVVSRHSSFIPTIL 1128

[Close]

BLAST of Cucsa.079430 vs. NCBI nr
Match: gi|923614274|ref|XP_013745228.1| (PREDICTED: uncharacterized protein LOC106447810 [Brassica napus])

HSP 1 Score: 213.4 bits (542), Expect = 3.9e-52
Identity = 109/212 (51.42%), Postives = 148/212 (69.81%), Query Frame = 1


Query: 1    FVRLWRTMMTLPVLAMPDFSIPFEIETDASGYGLGAVLIQNHRPIAYYSHTLAVRDRVKP 60
            F +L + M T+PVLA+PDF+  F IE+DASG GLGAVL+Q  RPIAY+S  L  R ++K 
Sbjct: 917  FQKLKQAMATVPVLALPDFNEQFVIESDASGVGLGAVLMQRQRPIAYFSQALTERQQMKS 976

Query: 61   VYERELMAVVMAVLRWRPYLLGKRFKVKTDQQSLKFLLEQRVIQPQYQKWISKLLGYSFE 120
            VYERELMA+V A+ +WR YLLG++F V+TDQ+SLKFLLEQR I  +YQ+W++K+LG+ F+
Sbjct: 977  VYERELMAIVFAIQKWRHYLLGRKFVVRTDQKSLKFLLEQREINMEYQRWLTKILGFDFD 1036

Query: 121  VIYKPGLENKAADALSRVPPTVHLNHLIAPNIIDVAMIKEEVNQDEKFKKIREELAEKGE 180
            + YKPGLENKAADALSR  P   L  +  P  I +  +  EV +D +  K+ +EL +   
Sbjct: 1037 IHYKPGLENKAADALSRKSPVTELFAVSVPVSIQLEEVGSEVERDSELSKLIQELTQDPS 1096

Query: 181  EQTSKYSMKQGMLMCKNLMVVSKTSKPIPMIL 213
                 Y++ QG L+    +V+ KTSK I +IL
Sbjct: 1097 SHPD-YTLVQGRLLRHGKLVLPKTSKLIELIL 1127

The following BLAST results are available for this feature:

BLAST of Cucsa.079430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	4.0e-20	39.13	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
POL5_DROME	5.2e-20	40.44	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
POL3_DROME	1.5e-19	40.16	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
POLY_DROME	2.2e-18	39.47	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
POL4_DROME	1.4e-17	34.57	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Cucsa.079430 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B2I6_VITVI	1.2e-55	51.42	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]
A0A087G3S6_ARAAL	2.7e-52	51.89	Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs46225U000100 PE=4...	[more]
A0A087HFW3_ARAAL	7.9e-52	52.36	Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G074100 PE=4 SV=1	[more]
A0A087FX63_ARAAL	3.0e-51	52.58	Uncharacterized protein (Fragment) OS=Arabis alpina GN=AALP_AAs67613U000200 PE=4...	[more]
A0A087G0A8_ARAAL	3.0e-51	50.94	Uncharacterized protein OS=Arabis alpina GN=AALP_AAs43195U000200 PE=4 SV=1	[more]

BLAST of Cucsa.079430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|729344250\|ref\|XP_010541181.1\|	1.0e-55	52.29	PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana]	[more]
gi\|729344250\|ref\|XP_010541181.1\|	1.8e-44	61.15	PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana]	[more]
gi\|778730254\|ref\|XP_011659739.1\|	1.9e-54	57.65	PREDICTED: uncharacterized protein LOC105436252 [Cucumis sativus]	[more]
gi\|729375164\|ref\|XP_010548864.1\|	1.9e-54	50.92	PREDICTED: uncharacterized protein LOC104820194 [Tarenaya hassleriana]	[more]
gi\|923614274\|ref\|XP_013745228.1\|	3.9e-52	51.42	PREDICTED: uncharacterized protein LOC106447810 [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.079430.1	Cucsa.079430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..194 score: 3.8
None	No IPR available	PANTHER	PTHR24559:SF201	SUBFAMILY NOT NAMED	coord: 1..194 score: 3.8
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 6..124 score: 8.15

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.079430	Cucurbita pepo (Zucchini)	cgycpeB0136
Cucsa.079430	Cucurbita pepo (Zucchini)	cgycpeB0137
Cucsa.079430	Cucurbita pepo (Zucchini)	cgycpeB0139
Cucsa.079430	Bottle gourd (USVL1VR-Ls)	cgylsiB080
Cucsa.079430	Bottle gourd (USVL1VR-Ls)	cgylsiB081
Cucsa.079430	Melon (DHL92) v3.6.1	cgymedB083
Cucsa.079430	Silver-seed gourd	carcgyB0071
Cucsa.079430	Silver-seed gourd	carcgyB0945
Cucsa.079430	Cucumber (Chinese Long) v3	cgycucB080
Cucsa.079430	Watermelon (97103) v2	cgywmbB078
Cucsa.079430	Wax gourd	cgywgoB092
Cucsa.079430	Wax gourd	cgywgoB094
Cucsa.079430	Cucurbita maxima (Rimu)	cgycmaB0133
Cucsa.079430	Cucurbita maxima (Rimu)	cgycmaB0135
Cucsa.079430	Cucurbita maxima (Rimu)	cgycmaB0139
Cucsa.079430	Cucurbita maxima (Rimu)	cgycmaB0142
Cucsa.079430	Cucurbita moschata (Rifu)	cgycmoB0130
Cucsa.079430	Cucurbita moschata (Rifu)	cgycmoB0132
Cucsa.079430	Cucurbita moschata (Rifu)	cgycmoB0135
Cucsa.079430	Cucurbita moschata (Rifu)	cgycmoB0137
Cucsa.079430	Wild cucumber (PI 183967)	cgycpiB079
Cucsa.079430	Cucumber (Chinese Long) v2	cgycuB076
Cucsa.079430	Melon (DHL92) v3.5.1	cgymeB085
Cucsa.079430	Watermelon (Charleston Gray)	cgywcgB081
Cucsa.079430	Watermelon (97103) v1	cgywmB083