Cucsa.079380 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.079380
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein of unknown function (DUF1685)
Location	scaffold00793 : 2051492 .. 2052069 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTTTCGAGAACTTTTAAGATGTGTTTCTGTCCCAAACTATGGGGGAGAGAAGTGAGTAATTTTAGCACACTCCATTGGTACCCAAAGGATTTCCTAATCCTTCCTTTCCCTCACTTTTGGCAATAGACTTCCCACTCCTTCACATTTCCTATTCCTAACTCCTTCCTATCTACTGTTCTTCACTCTACGTAATCCTTCTCCCTCTCAAACCCTTCTTCGAATCCCTACTTTGTTTCCCATCTCTCTATTTCTCTCTTTCCTTTGAATCCCTTCTCTATTTTCGTTCTCTAAATCCCAAATCTAAAACCCTTCTCCTTCTTCGTAGGTCTCTTGAAGACTTGGTTTTCCTTGCCTAGCTCTAAAATCGTTTTCCTTCTCCGTCGTTGTTTGGTTGAGGATGAGGATGATTTGATGAGGACCAAGAGCTTAATGGATTAGGATCTTGATGAACTTAGATGCTATGTAGATCTAGGCTTTTGTTTTAGGTACGATGAGATTCTGGAGCTCTGTAACACTCTGTCAGCTTTGGATCTTTGTTATTCCATGAGTCAGAAGTACATGGATGATCACTG

mRNA sequence

atGACTCTTTCGAGAACTTTTAAGATGTGTTTCTGTCCCAAACTATGGGGGAGAGAAGATCTTGATGAACTTAGATGCTATGTAGATCTAGGCTTTTGTTTTAGGTACGATGAGATTCTGGAGCTCTGTAACACTCTGTCAGCTTTGGATCTTTGTTATTCCATGAGTCAGAAGTACATGGATGATCACtg

Coding sequence (CDS)

ATGACTCTTTCGAGAACTTTTAAGATGTGTTTCTGTCCCAAACTATGGGGGAGAGAAGATCTTGATGAACTTAGATGCTATGTAGATCTAGGCTTTTGTTTTAGGTACGATGAGATTCTGGAGCTCTGTAACACTCTGTCAGCTTTGGATCTTTGTTATTCCATGAGTCAGAAGTACATGGATGATCACTG

Protein sequence

MTLSRTFKMCFCPKLWGREDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDHX

Homology

[Close]

BLAST of Cucsa.079380 vs. TrEMBL
Match: A0A0A0KXD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012530 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.1e-12
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  VDLGF F YDEI ELCNTL AL+LCYSMSQKYMDDH
Sbjct: 81  EDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDDH 125

[Close]

BLAST of Cucsa.079380 vs. TrEMBL
Match: A0A0J8CRB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054830 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           +DLDEL+  VDLGF F YDEI ELCNTL AL+LCYSMSQK++DDH
Sbjct: 83  DDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDH 127

[Close]

BLAST of Cucsa.079380 vs. TrEMBL
Match: A0A067DKT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  +DLGF F YDEI ELCNTL AL+LCYSMSQK+MD+H
Sbjct: 84  EDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEH 128

[Close]

BLAST of Cucsa.079380 vs. TrEMBL
Match: V4VT44_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022453mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  +DLGF F YDEI ELCNTL AL+LCYSMSQK+MD+H
Sbjct: 84  EDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEH 128

[Close]

BLAST of Cucsa.079380 vs. TrEMBL
Match: A0A067DY07_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  +DLGF F YDEI ELCNTL AL+LCYSMSQK+MD+H
Sbjct: 84  EDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEH 128

[Close]

BLAST of Cucsa.079380 vs. TAIR10
Match: AT1G05870.1 (AT1G05870.1 Protein of unknown function (DUF1685))

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDD 63
           +DL++LR  +DLGF F YDEI ELCNTL AL+LCYSMSQK++DD
Sbjct: 87  DDLEDLRGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDD 130

[Close]

BLAST of Cucsa.079380 vs. TAIR10
Match: AT2G31560.1 (AT2G31560.1 Protein of unknown function (DUF1685))

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDD 63
           +DL+EL+  +DLGF F YDEI ELCNTL AL+LCYSMSQK++DD
Sbjct: 101 DDLEELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDD 144

[Close]

BLAST of Cucsa.079380 vs. TAIR10
Match: AT2G43340.1 (AT2G43340.1 Protein of unknown function (DUF1685))

HSP 1 Score: 66.6 bits (161), Expect = 6.2e-12
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMD-DH 64
           +DL+EL+  VDLGF F Y+EI ELCNTL AL+LCYSMSQK++D DH
Sbjct: 88  DDLEELKGCVDLGFGFNYEEIPELCNTLPALELCYSMSQKFIDQDH 133

[Close]

BLAST of Cucsa.079380 vs. TAIR10
Match: AT3G22690.1 (AT3G22690.1 Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 59.7 bits (143), Expect = 7.6e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDD 63
           +DL+ L+  +DLGF F YDEI  LC TL AL+LCYSMSQK +DD
Sbjct: 846 DDLEVLKGCLDLGFGFNYDEIPALCKTLPALELCYSMSQKNLDD 889

[Close]

BLAST of Cucsa.079380 vs. NCBI nr
Match: gi|449468798|ref|XP_004152108.1| (PREDICTED: uncharacterized protein LOC101213317 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-12
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  VDLGF F YDEI ELCNTL AL+LCYSMSQKYMDDH
Sbjct: 81  EDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDDH 125

[Close]

BLAST of Cucsa.079380 vs. NCBI nr
Match: gi|659108062|ref|XP_008453998.1| (PREDICTED: uncharacterized protein LOC103494552 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-12
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  VDLGF F YDEI ELCNTL AL+LCYSMSQKYMDDH
Sbjct: 82  EDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDDH 126

[Close]

BLAST of Cucsa.079380 vs. NCBI nr
Match: gi|731322300|ref|XP_010671814.1| (PREDICTED: uncharacterized protein LOC104888508 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           +DLDEL+  VDLGF F YDEI ELCNTL AL+LCYSMSQK++DDH
Sbjct: 83  DDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDH 127

[Close]

BLAST of Cucsa.079380 vs. NCBI nr
Match: gi|641824148|gb|KDO43501.1| (hypothetical protein CISIN_1g029447mg [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  +DLGF F YDEI ELCNTL AL+LCYSMSQK+MD+H
Sbjct: 84  EDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEH 128

[Close]

BLAST of Cucsa.079380 vs. NCBI nr
Match: gi|567901172|ref|XP_006443074.1| (hypothetical protein CICLE_v10022453mg [Citrus clementina])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 19  EDLDELRCYVDLGFCFRYDEILELCNTLSALDLCYSMSQKYMDDH 64
           EDLDEL+  +DLGF F YDEI ELCNTL AL+LCYSMSQK+MD+H
Sbjct: 84  EDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEH 128

The following BLAST results are available for this feature:

BLAST of Cucsa.079380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXD6_CUCSA	4.1e-12	82.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G012530 PE=4 SV=1	[more]
A0A0J8CRB7_BETVU	5.9e-11	75.56	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054830 PE=4 S...	[more]
A0A067DKT5_CITSI	7.7e-11	75.56	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1	[more]
V4VT44_9ROSI	7.7e-11	75.56	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022453mg PE=4 SV=1	[more]
A0A067DY07_CITSI	7.7e-11	75.56	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1	[more]

BLAST of Cucsa.079380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05870.1	1.6e-12	70.45	Protein of unknown function (DUF1685)	[more]
AT2G31560.1	1.6e-12	70.45	Protein of unknown function (DUF1685)	[more]
AT2G43340.1	6.2e-12	69.57	Protein of unknown function (DUF1685)	[more]
AT3G22690.1	7.6e-10	63.64	Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatrico...	[more]

BLAST of Cucsa.079380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468798\|ref\|XP_004152108.1\|	5.9e-12	82.22	PREDICTED: uncharacterized protein LOC101213317 [Cucumis sativus]	[more]
gi\|659108062\|ref\|XP_008453998.1\|	5.9e-12	82.22	PREDICTED: uncharacterized protein LOC103494552 [Cucumis melo]	[more]
gi\|731322300\|ref\|XP_010671814.1\|	8.5e-11	75.56	PREDICTED: uncharacterized protein LOC104888508 [Beta vulgaris subsp. vulgaris]	[more]
gi\|641824148\|gb\|KDO43501.1\|	1.1e-10	75.56	hypothetical protein CISIN_1g029447mg [Citrus sinensis]	[more]
gi\|567901172\|ref\|XP_006443074.1\|	1.1e-10	75.56	hypothetical protein CICLE_v10022453mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012881	DUF1685

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.079380.1	Cucsa.079380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012881	Protein of unknown function DUF1685	PFAM	PF07939	DUF1685	coord: 19..63 score: 8.5
None	No IPR available	PANTHER	PTHR31865	FAMILY NOT NAMED	coord: 19..63 score: 1.9
None	No IPR available	PANTHER	PTHR31865:SF0	SUBFAMILY NOT NAMED	coord: 19..63 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.079380	Melon (DHL92) v3.6.1	cgymedB083
Cucsa.079380	Silver-seed gourd	carcgyB0071
Cucsa.079380	Silver-seed gourd	carcgyB0945
Cucsa.079380	Cucumber (Chinese Long) v3	cgycucB080
Cucsa.079380	Watermelon (97103) v2	cgywmbB078
Cucsa.079380	Wax gourd	cgywgoB092
Cucsa.079380	Wax gourd	cgywgoB094
Cucsa.079380	Cucurbita maxima (Rimu)	cgycmaB0133
Cucsa.079380	Cucurbita maxima (Rimu)	cgycmaB0135
Cucsa.079380	Cucurbita maxima (Rimu)	cgycmaB0139
Cucsa.079380	Cucurbita maxima (Rimu)	cgycmaB0142
Cucsa.079380	Cucurbita moschata (Rifu)	cgycmoB0130
Cucsa.079380	Cucurbita moschata (Rifu)	cgycmoB0132
Cucsa.079380	Cucurbita moschata (Rifu)	cgycmoB0135
Cucsa.079380	Cucurbita moschata (Rifu)	cgycmoB0137
Cucsa.079380	Wild cucumber (PI 183967)	cgycpiB079
Cucsa.079380	Cucumber (Chinese Long) v2	cgycuB076
Cucsa.079380	Melon (DHL92) v3.5.1	cgymeB085
Cucsa.079380	Watermelon (Charleston Gray)	cgywcgB081
Cucsa.079380	Watermelon (97103) v1	cgywmB083
Cucsa.079380	Cucurbita pepo (Zucchini)	cgycpeB0136
Cucsa.079380	Cucurbita pepo (Zucchini)	cgycpeB0137
Cucsa.079380	Cucurbita pepo (Zucchini)	cgycpeB0139
Cucsa.079380	Bottle gourd (USVL1VR-Ls)	cgylsiB080
Cucsa.079380	Bottle gourd (USVL1VR-Ls)	cgylsiB081