Cucsa.076050 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.076050
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTransducin/WD40 repeat-like superfamily protein
Locationscaffold00789 : 533098 .. 533848 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAACTCCAAGTGGATGTAAGTCAAGTTTGACTAATAGTATCTTCTTTTCTAATTATTTTTTCATTTAATTTTAGATGTATATTTTTTGTGGTTGAGTTTGATTGCACACTCTATTACGTATTTTAATCAAATGATATGCATACATTTTTCATATAAGCTTTCCTCTTTTTGTGTGCCATCTTCTTTCATGTTATGATCAACCTGTTGGTTCTTTTTTTGCTATTACAGCATCTGTTTTGAAAGAAAAGCTTTCATCCTTGTGTGCATCTGGAATATTAGCTGACCATGAACTTCAAGCGCAGCTGCAAGAACATCATCTGAAAGGGTGAGCTTATGCATTCTGTACTCGATTGAAAGAAAAAGGGTAAAGAACACCCAAAAACCTTTGATGAAAGCAAAGAAAATGTCATTGAGTAGTATGCAAGATCTTGTTGAAAGAAACCACCAAATAGACAAAAACTTAAACTGAAGAAAGCTAAAAAAGCAAAGGTAGGGTGCAATATGTTAACTTTCTCAATAAGAACCTTCTCATGCATGCCAACCTAAGTAATTAGACTAAAACACAGCACCCATTGTCTCAACCAAACATAAATTGTTTAGAGATACTTAACCAAAAGCTCTTCAATCTAGTTGATGGTTGACCCAAAATAATCTGGAATTCCAGAGTTATCTGGAATAATTCATTGTATCCTCGTTTTTCAGATACTTTGATGGAAGGATTGATATTTTCACCATTCATTAAACATTGA

mRNA sequence

ttcaactccaagtggatCATCTGTTTTGAAAGAAAAGCTTTCATCCTTGTGTGCATCTGGAATATTAGCTGACCATGAACTTCAAGCGCAGCTGCAAGAACATCATCTGAAAGGAGTTATCTGGAATAATTCATTGTATCCTCGTTTTTCAGATACTTTGATGGAAGGATTGATATTTTCACCATTCATTAAACATTGA

Coding sequence (CDS)

TTCAACTCCAAGTGGATCATCTGTTTTGAAAGAAAAGCTTTCATCCTTGTGTGCATCTGGAATATTAGCTGACCATGAACTTCAAGCGCAGCTGCAAGAACATCATCTGAAAGGAGTTATCTGGAATAATTCATTGTATCCTCGTTTTTCAGATACTTTGATGGAAGGATTGATATTTTCACCATTCATTAAACATTGA

Protein sequence

STPSGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFIKH*
Homology
[Close]
BLAST of Cucsa.076050 vs. TrEMBL
Match: A0A0A0LLY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285390 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-09
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFI 63
           S +SVLKEKLSSLCASGILADHELQAQLQEHHLKG   ++SL    SD   +  + S F+
Sbjct: 367 SSASVLKEKLSSLCASGILADHELQAQLQEHHLKG---HSSL--TISDIARKAFLHSHFM 422

Query: 64  K 65
           +
Sbjct: 427 E 422

[Close]
BLAST of Cucsa.076050 vs. TrEMBL
Match: U5G8C1_POPTR (Transducin family protein OS=Populus trichocarpa GN=POPTR_0007s11290g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-07
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKG 39
           S +SVLKEKLSSL +SGILADH+LQAQLQEHHLKG
Sbjct: 368 SSASVLKEKLSSLGSSGILADHQLQAQLQEHHLKG 402

[Close]
BLAST of Cucsa.076050 vs. TrEMBL
Match: A0A166B9R3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011292 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-07
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFI 63
           S +SVLKEKLSSL +SGILADH LQAQ+QEHHLKG   +N L    SD   +  ++S F+
Sbjct: 389 STASVLKEKLSSLGSSGILADHHLQAQMQEHHLKG---HNQL--TISDIARKAFLYSHFM 444

Query: 64  K 65
           +
Sbjct: 449 E 444

[Close]
BLAST of Cucsa.076050 vs. TrEMBL
Match: A0A059BT22_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F026622 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-07
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 4  SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFI 63
          S +SVLKEKLSSL +SGILA+H+LQAQLQEHHLKG    N L    SD   +  ++S F+
Sbjct: 17 SSASVLKEKLSSLGSSGILAEHQLQAQLQEHHLKG---QNHL--TISDIARKAFLYSHFM 72

Query: 64 K 65
          +
Sbjct: 77 E 72

[Close]
BLAST of Cucsa.076050 vs. TrEMBL
Match: A0A059BS68_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F026622 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-07
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 4  SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFI 63
          S +SVLKEKLSSL +SGILA+H+LQAQLQEHHLKG    N L    SD   +  ++S F+
Sbjct: 17 SSASVLKEKLSSLGSSGILAEHQLQAQLQEHHLKG---QNHL--TISDIARKAFLYSHFM 72

Query: 64 K 65
          +
Sbjct: 77 E 72

[Close]
BLAST of Cucsa.076050 vs. TAIR10
Match: AT3G50590.1 (AT3G50590.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.0e-06
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEH 35
           S +SVLKEKLSS+ +SGILA+H+LQA LQEH
Sbjct: 368 SSASVLKEKLSSMGSSGILAEHQLQALLQEH 398

[Close]
BLAST of Cucsa.076050 vs. NCBI nr
Match: gi|778670027|ref|XP_011649345.1| (PREDICTED: uncharacterized protein LOC101204486 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-09
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFI 63
           S +SVLKEKLSSLCASGILADHELQAQLQEHHLKG   ++SL    SD   +  + S F+
Sbjct: 367 SSASVLKEKLSSLCASGILADHELQAQLQEHHLKG---HSSL--TISDIARKAFLHSHFM 422

Query: 64  K 65
           +
Sbjct: 427 E 422

[Close]
BLAST of Cucsa.076050 vs. NCBI nr
Match: gi|1000958634|ref|XP_015576750.1| (PREDICTED: uncharacterized protein LOC8267228 [Ricinus communis])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFI 63
           S +S+LKEKLSSL +SGILADH+LQAQLQEHHLKG    N      SD   +  ++S F+
Sbjct: 367 SSASILKEKLSSLGSSGILADHQLQAQLQEHHLKG----NQSQLTISDIARKAFLYSHFM 423

Query: 64  K 65
           +
Sbjct: 427 E 423

[Close]
BLAST of Cucsa.076050 vs. NCBI nr
Match: gi|659115939|ref|XP_008457818.1| (PREDICTED: uncharacterized protein LOC103497411 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-07
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFSPFI 63
           S +SVLKEKLSSL ASGILADH+LQAQLQEHHLKG   ++SL    SD   +  + S F+
Sbjct: 367 SSASVLKEKLSSLGASGILADHQLQAQLQEHHLKG---HSSL--TISDIARKAFLHSHFM 422

Query: 64  K 65
           +
Sbjct: 427 E 422

[Close]
BLAST of Cucsa.076050 vs. NCBI nr
Match: gi|743890942|ref|XP_011039199.1| (PREDICTED: uncharacterized protein LOC105135830 [Populus euphratica])

HSP 1 Score: 61.2 bits (147), Expect = 7.7e-07
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKG 39
           S +SVLKEKLSSL +SGILADH+LQAQLQEHHLKG
Sbjct: 368 SSASVLKEKLSSLGSSGILADHQLQAQLQEHHLKG 402

[Close]
BLAST of Cucsa.076050 vs. NCBI nr
Match: gi|223538390|gb|EEF39996.1| (nucleotide binding protein, putative [Ricinus communis])

HSP 1 Score: 61.2 bits (147), Expect = 7.7e-07
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 4   SGSSVLKEKLSSLCASGILADHELQAQLQEHHLKGVIWNNSLYPRFSDTLMEGLIFS 61
           S +S+LKEKLSSL +SGILADH+LQAQLQEHHLKG    N      SD   +  ++S
Sbjct: 343 SSASILKEKLSSLGSSGILADHQLQAQLQEHHLKG----NQSQLTISDIARKAFLYS 395

The following BLAST results are available for this feature:
BLAST of Cucsa.076050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLY5_CUCSA3.3e-0963.93Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285390 PE=4 SV=1[more]
U5G8C1_POPTR5.3e-0785.71Transducin family protein OS=Populus trichocarpa GN=POPTR_0007s11290g PE=4 SV=1[more]
A0A166B9R3_DAUCA5.3e-0757.38Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011292 PE=4 SV=1[more]
A0A059BT22_EUCGR5.3e-0757.38Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F026622 PE=4... [more]
A0A059BS68_EUCGR5.3e-0757.38Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_F026622 PE=4... [more]
BLAST of Cucsa.076050 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50590.14.0e-0674.19 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of Cucsa.076050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778670027|ref|XP_011649345.1|4.8e-0963.93PREDICTED: uncharacterized protein LOC101204486 [Cucumis sativus][more]
gi|1000958634|ref|XP_015576750.1|1.5e-0755.74PREDICTED: uncharacterized protein LOC8267228 [Ricinus communis][more]
gi|659115939|ref|XP_008457818.1|2.6e-0760.66PREDICTED: uncharacterized protein LOC103497411 [Cucumis melo][more]
gi|743890942|ref|XP_011039199.1|7.7e-0785.71PREDICTED: uncharacterized protein LOC105135830 [Populus euphratica][more]
gi|223538390|gb|EEF39996.1|7.7e-0757.89nucleotide binding protein, putative [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030126 COPI vesicle coat
molecular_function GO:0005198 structural molecule activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.076050.1Cucsa.076050.1mRNA