Cucsa.075950 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.075950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cleavage and polyadenylation specificity factor subunit 3
Location	scaffold00789 : 466972 .. 468135 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGGTTGGACAGCCACCCTCCCTTAAGAAACGGGATGCATCCTCGACCAGAGAGGAGGATCAGCTTATTATAACTCCTCTTGGGGCTGGCAATGAAGTGGGTCGTTCCTGTGTATATATGTCTTACAAAAGCAAAATTGTTTTGGTATGGTTTGAACTCATTATTATTTCTCATTTACTATCTGGGTATAAATAACATATGGAGGTTTAATTGTGTTGGTGGTAATTTTtCTTTTCTCCTCTTGTTTTTCTTGGATTACAGTTTGATTGTGGAATTCACCCTGCTTACTCGGGTATGGCTGCTTTGCCTTACTTTGATGAGATTGACCCTTCAACGATTGATGTCCTGCTCATTACCCAGTATGTATTTCTTTCCTTCTTTCTTTCTAAAATATTTAGATAATGCAGCTCTTAACTTGGACATTTTGTGTTTTATAGCTCTTTTTtACTTATGCAAAATTAGTGATCACATTCTTTCGGAACTCGTGTTCTACATATTGTTAAGACTCTTGCCTCCTTACTAAAATCATGGAAAATGCAAATATTCCCGAGGAGCAGTTTTTCAGTGTCTTTTTTAATCTGATCATGGCACGAGATTCTAATTTTTCCAGCTCTCTTTATTTTCTGCCTCTTATTGTTTTTTGTGTTCTTTTAACCAAGATAATTTCGTGCACACTTATTTCACAGCTTTCATTTGGACCATGCTGCATCACTCCCTTATTTCTTGGAGAAGGTACTTTCTATTTGACTTTCAATGTGATTGTTGCTCGAGTACAGAAACTAATCTAGCATTAATTTGATAGACTACATTCAAAGGACGAGTCTTTATGACTTATGCTACTAAAGCGATCTACAAGTTGTTGCTCTCGGACTTTGTGAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTATGATGAGCAGGACATAAATCGTTCCATGGACAAGATTGAGGTAAATTATTTCTCACTGTGGACATCTCTCGAGTCTTGACTTGCTGTTTCATCCATCGTGATAATTAATTTTCAGTGATTCTACCAAAATCGTACCTTCTATTAAAAATCTGCTTGACGTTTTATTTAGTAACAGTTTATCAAATGTACATTCCACTCGCACTATCTGTCATTCGTCTGCCTCTGCCCTTATCTCCTCCTGCTTTA

mRNA sequence

ATGGCTTCGGTTGGACAGCCACCCTCCCTTAAGAAACGGGATGCATCCTCGACCAGAGAGGAGGATCAGCTTATTATAACTCCTCTTGGGGCTGGCAATGAAGTGGGTCGTTCCTGTGTATATATGTCTTACAAAAGCAAAATTGTTTTGTTTGATTGTGGAATTCACCCTGCTTACTCGGGTATGGCTGCTTTGCCTTACTTTGATGAGATTGACCCTTCAACGATTGATGTCCTGCTCATTACCCACTTTCATTTGGACCATGCTGCATCACTCCCTTATTTCTTGGAGAAGACTACATTCAAAGGACGAGTCTTTATGACTTATGCTACTAAAGCGATCTACAAGTTGTTGCTCTCGGACTTTGTGAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTATGATGAGCAGGACATAAATCGTTCCATGGACAAGATTGAGGTAAATTATTTCTCACTTTTATCAAATGTACATTCCACTCGCACTATCTGTCATTCGTCTGCCTCTGCCCTTATCTCCTCCTGCTTTA

Coding sequence (CDS)

ATGGCTTCGGTTGGACAGCCACCCTCCCTTAAGAAACGGGATGCATCCTCGACCAGAGAGGAGGATCAGCTTATTATAACTCCTCTTGGGGCTGGCAATGAAGTGGGTCGTTCCTGTGTATATATGTCTTACAAAAGCAAAATTGTTTTGTTTGATTGTGGAATTCACCCTGCTTACTCGGGTATGGCTGCTTTGCCTTACTTTGATGAGATTGACCCTTCAACGATTGATGTCCTGCTCATTACCCACTTTCATTTGGACCATGCTGCATCACTCCCTTATTTCTTGGAGAAGACTACATTCAAAGGACGAGTCTTTATGACTTATGCTACTAAAGCGATCTACAAGTTGTTGCTCTCGGACTTTGTGAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTATGATGAGCAGGACATAAATCGTTCCATGGACAAGATTGAGGTAAATTATTTCTCACTTTTATCAAATGTACATTCCACTCGCACTATCTGTCATTCGTCTGCCTCTGCCCTTATCTCCTCCTGCTTTA

Protein sequence

MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCFX

Homology

[Close]

BLAST of Cucsa.075950 vs. Swiss-Prot
Match: CPSF3_ARATH (Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-66
Identity = 123/169 (72.78%), Postives = 146/169 (86.39%), Query Frame = 1


Query: 9   SLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYF 68
           SLK+R+   +R+ DQLI+TPLGAG+EVGRSCVYMS++ K +LFDCGIHPAYSGMAALPYF
Sbjct: 7   SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66

Query: 69  DEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKV 128
           DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+D+VKVSKV
Sbjct: 67  DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126

Query: 129 SVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           SVEDML+DEQDIN+SMDKIEV  F     V+  +  C+++   L ++ F
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMF 175

[Close]

BLAST of Cucsa.075950 vs. Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 90/163 (55.21%), Postives = 116/163 (71.17%), Query Frame = 1


Query: 15  ASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPS 74
           A    E DQL+I PLGAG EVGRSC+ + +K + ++ DCGIHP   GM ALPY D IDP+
Sbjct: 3   AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA 62

Query: 75  TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDML 134
            ID+LLI+HFHLDH  +LP+FL+KT+FKGR FMT+ATKAIY+ LLSD+VKVS +S +DML
Sbjct: 63  EIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDML 122

Query: 135 YDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           Y E D+  SMDKIE   F  +  V   +  C+ +   L ++ F
Sbjct: 123 YTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMF 165

[Close]

BLAST of Cucsa.075950 vs. Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 90/163 (55.21%), Postives = 116/163 (71.17%), Query Frame = 1


Query: 15  ASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPS 74
           A    E DQL+I PLGAG EVGRSC+ + +K + ++ DCGIHP   GM ALPY D IDP+
Sbjct: 3   AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA 62

Query: 75  TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDML 134
            ID+LLI+HFHLDH  +LP+FL+KT+FKGR FMT+ATKAIY+ LLSD+VKVS +S +DML
Sbjct: 63  EIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDML 122

Query: 135 YDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           Y E D+  SMDKIE   F  +  V   +  C+ +   L ++ F
Sbjct: 123 YTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMF 165

[Close]

BLAST of Cucsa.075950 vs. Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 90/163 (55.21%), Postives = 116/163 (71.17%), Query Frame = 1


Query: 15  ASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPS 74
           A    E DQL+I PLGAG EVGRSC+ + +K + ++ DCGIHP   GM ALPY D IDP+
Sbjct: 3   AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA 62

Query: 75  TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDML 134
            ID+LLI+HFHLDH  +LP+FL+KT+FKGR FMT+ATKAIY+ LLSD+VKVS +S +DML
Sbjct: 63  EIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDML 122

Query: 135 YDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           Y E D+  SMDKIE   F  +  V   +  C+ +   L ++ F
Sbjct: 123 YTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMF 165

[Close]

BLAST of Cucsa.075950 vs. Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 88/171 (51.46%), Postives = 125/171 (73.10%), Query Frame = 1


Query: 10  LKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFD 69
           LK+     T ++D L ITP+G+G+EVGRSCV + YK K V+FDCG+HPAYSG+ +LP+FD
Sbjct: 22  LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFD 81

Query: 70  EI--DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSK 129
            I  D   ID+LL++HFHLDHAA++PYF+ KT FKGRVFMT+ TKAIY +LLSD+VKVS 
Sbjct: 82  SIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSN 141

Query: 130 VS-VEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           ++  +DML+D+ D++RS++KIE   +      +  +  C ++   L ++ F
Sbjct: 142 ITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMF 192

[Close]

BLAST of Cucsa.075950 vs. TrEMBL
Match: A0A0A0KPU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587210 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.4e-80
Identity = 155/177 (87.57%), Postives = 161/177 (90.96%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS
Sbjct: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS
Sbjct: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           DFVKVSKVSVEDMLYDEQDINRSMDKIEV  F     V+  R  C+++   L ++ F
Sbjct: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. TrEMBL
Match: A0A067DKM2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044504mg PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.3e-73
Identity = 141/177 (79.66%), Postives = 155/177 (87.57%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MASVGQPPSLK+RDA  +RE DQLIITPLGAGNEVGRSCVYMSYK K +LFDCGIHPAYS
Sbjct: 1   MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMT+ATKAIYKLLL+
Sbjct: 61  GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           D+VKVSKVSVEDML+DEQDINRSMDKIEV  F     V+  +  C+++   L ++ F
Sbjct: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. TrEMBL
Match: V4SW26_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000468mg PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.3e-73
Identity = 141/177 (79.66%), Postives = 155/177 (87.57%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MASVGQPPSLK+RDA  +RE DQLIITPLGAGNEVGRSCVYMSYK K +LFDCGIHPAYS
Sbjct: 1   MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMT+ATKAIYKLLL+
Sbjct: 61  GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           D+VKVSKVSVEDML+DEQDINRSMDKIEV  F     V+  +  C+++   L ++ F
Sbjct: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. TrEMBL
Match: W9SAX4_9ROSA (Cleavage and polyadenylation specificity factor subunit 3-I OS=Morus notabilis GN=L484_013823 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.2e-72
Identity = 138/176 (78.41%), Postives = 155/176 (88.07%), Query Frame = 1


Query: 2   ASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSG 61
           ++ GQP SLK+RD+ + REED+L+ITPLGAGNEVGRSCVYMS+KSK VLFDCGIHPAYSG
Sbjct: 3   STTGQPASLKRRDSLAAREEDKLVITPLGAGNEVGRSCVYMSFKSKTVLFDCGIHPAYSG 62

Query: 62  MAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSD 121
           MAALPYFDEIDPST+DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLL+D
Sbjct: 63  MAALPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLTD 122

Query: 122 FVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           +VKVSKVSVEDMLYDEQDINRSMDKIEV  F     V+  R  C+++   L ++ F
Sbjct: 123 YVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMF 178

[Close]

BLAST of Cucsa.075950 vs. TrEMBL
Match: A0A0D2TUL9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039200 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.4e-72
Identity = 139/177 (78.53%), Postives = 154/177 (87.01%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MAS GQPPSLK+RDA  T+E DQL ITPLGAGNEVGRSCVYM+YKSK VLFDCGIHPAYS
Sbjct: 1   MASTGQPPSLKRRDAPLTKEGDQLTITPLGAGNEVGRSCVYMTYKSKTVLFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTF+GRVFMT+ATKAIYKLLL+
Sbjct: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLLT 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           D+VKVSKVSVEDML+DEQDI RSMDKIEV  F     V+  +  C+++   L ++ F
Sbjct: 121 DYVKVSKVSVEDMLFDEQDIGRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. TAIR10
Match: AT1G61010.1 (AT1G61010.1 cleavage and polyadenylation specificity factor 73-I)

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-67
Identity = 123/169 (72.78%), Postives = 146/169 (86.39%), Query Frame = 1


Query: 9   SLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYF 68
           SLK+R+   +R+ DQLI+TPLGAG+EVGRSCVYMS++ K +LFDCGIHPAYSGMAALPYF
Sbjct: 7   SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66

Query: 69  DEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKV 128
           DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMT+ATKAIYKLLL+D+VKVSKV
Sbjct: 67  DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126

Query: 129 SVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           SVEDML+DEQDIN+SMDKIEV  F     V+  +  C+++   L ++ F
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMF 175

[Close]

BLAST of Cucsa.075950 vs. TAIR10
Match: AT2G01730.1 (AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II)

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-18
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1


Query: 29  LGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPS-----TIDVLLITH 88
           LGAG E+G+SCV ++   K ++FDCG+H         P F  I  S      I  ++ITH
Sbjct: 8   LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67

Query: 89  FHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKV 126
           FH+DH  +LPYF E   + G ++M+Y TKA+  L+L D+ +V
Sbjct: 68  FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRV 109

[Close]

BLAST of Cucsa.075950 vs. NCBI nr
Match: gi|778704530|ref|XP_011655552.1| (PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-I-like [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 6.3e-80
Identity = 155/177 (87.57%), Postives = 161/177 (90.96%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS
Sbjct: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS
Sbjct: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           DFVKVSKVSVEDMLYDEQDINRSMDKIEV  F     V+  R  C+++   L ++ F
Sbjct: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. NCBI nr
Match: gi|700196473|gb|KGN51650.1| (hypothetical protein Csa_5G587210 [Cucumis sativus])

HSP 1 Score: 305.4 bits (781), Expect = 6.3e-80
Identity = 155/177 (87.57%), Postives = 161/177 (90.96%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS
Sbjct: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS
Sbjct: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           DFVKVSKVSVEDMLYDEQDINRSMDKIEV  F     V+  R  C+++   L ++ F
Sbjct: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. NCBI nr
Match: gi|778704517|ref|XP_011655548.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Cucumis sativus])

HSP 1 Score: 300.1 bits (767), Expect = 2.6e-78
Identity = 152/177 (85.88%), Postives = 160/177 (90.40%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MAS+GQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS
Sbjct: 1   MASLGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLL 
Sbjct: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLL 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           DFVKVSKVSVEDMLYDEQDI+RSMDKIEV  F     V+  R  C+++   L ++ F
Sbjct: 121 DFVKVSKVSVEDMLYDEQDISRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. NCBI nr
Match: gi|1009124264|ref|XP_015878973.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Ziziphus jujuba])

HSP 1 Score: 288.5 bits (737), Expect = 8.0e-75
Identity = 142/177 (80.23%), Postives = 157/177 (88.70%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MAS GQPPSLK+RD+S TREED+L++TPLGAGNEVGRSCVYMSYK K VLFDCGIHPAYS
Sbjct: 1   MASTGQPPSLKRRDSSVTREEDKLVVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTF+GRVFMTYATKAIYKLLL+
Sbjct: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLT 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           D+VKVSKVSVEDML+DEQDINRSMDKIEV  F     V+  R  C+++   L ++ F
Sbjct: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMF 177

[Close]

BLAST of Cucsa.075950 vs. NCBI nr
Match: gi|641824189|gb|KDO43539.1| (hypothetical protein CISIN_1g044504mg, partial [Citrus sinensis])

HSP 1 Score: 283.1 bits (723), Expect = 3.3e-73
Identity = 141/177 (79.66%), Postives = 155/177 (87.57%), Query Frame = 1


Query: 1   MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
           MASVGQPPSLK+RDA  +RE DQLIITPLGAGNEVGRSCVYMSYK K +LFDCGIHPAYS
Sbjct: 1   MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60

Query: 61  GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
           GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMT+ATKAIYKLLL+
Sbjct: 61  GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120

Query: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVNYFSLLSNVHSTRTICHSSASALISSCF 178
           D+VKVSKVSVEDML+DEQDINRSMDKIEV  F     V+  +  C+++   L ++ F
Sbjct: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMF 177

The following BLAST results are available for this feature:

BLAST of Cucsa.075950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CPSF3_ARATH	2.3e-66	72.78	Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thali...	[more]
CPSF3_MOUSE	1.1e-47	55.21	Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cps...	[more]
CPSF3_BOVIN	1.1e-47	55.21	Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3...	[more]
CPSF3_HUMAN	1.1e-47	55.21	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPS...	[more]
CPSF3_DICDI	1.9e-44	51.46	Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium disco...	[more]

BLAST of Cucsa.075950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU1_CUCSA	4.4e-80	87.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G587210 PE=4 SV=1	[more]
A0A067DKM2_CITSI	2.3e-73	79.66	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044504mg PE=4 S...	[more]
V4SW26_9ROSI	2.3e-73	79.66	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000468mg PE=4 SV=1	[more]
W9SAX4_9ROSA	1.2e-72	78.41	Cleavage and polyadenylation specificity factor subunit 3-I OS=Morus notabilis G...	[more]
A0A0D2TUL9_GOSRA	3.4e-72	78.53	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G039200 PE=4 SV=1	[more]

BLAST of Cucsa.075950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61010.1	1.3e-67	72.78	cleavage and polyadenylation specificity factor 73-I	[more]
AT2G01730.1	1.5e-18	41.18	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]

BLAST of Cucsa.075950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704530\|ref\|XP_011655552.1\|	6.3e-80	87.57	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor ...	[more]
gi\|700196473\|gb\|KGN51650.1\|	6.3e-80	87.57	hypothetical protein Csa_5G587210 [Cucumis sativus]	[more]
gi\|778704517\|ref\|XP_011655548.1\|	2.6e-78	85.88	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Cuc...	[more]
gi\|1009124264\|ref\|XP_015878973.1\|	8.0e-75	80.23	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Ziziphus...	[more]
gi\|641824189\|gb\|KDO43539.1\|	3.3e-73	79.66	hypothetical protein CISIN_1g044504mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001279	Metallo-B-lactamas

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.075950.1	Cucsa.075950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	GENE3D	G3DSA:3.60.15.10		coord: 21..123 score: 1.2
IPR001279	Metallo-beta-lactamase	PFAM	PF00753	Lactamase_B	coord: 35..118 score: 2.7
IPR001279	Metallo-beta-lactamase	unknown	SSF56281	Metallo-hydrolase/oxidoreductase	coord: 22..153 score: 2.23
None	No IPR available	PANTHER	PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	coord: 15..149 score: 1.4
None	No IPR available	PANTHER	PTHR11203:SF11	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 3	coord: 15..149 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.075950	Cla022944	Watermelon (97103) v1	cgywmB080
Cucsa.075950	Csa5G587170	Cucumber (Chinese Long) v2	cgycuB073
Cucsa.075950	MELO3C011841	Melon (DHL92) v3.5.1	cgymeB077
Cucsa.075950	ClCG11G013430	Watermelon (Charleston Gray)	cgywcgB076
Cucsa.075950	CSPI05G21110	Wild cucumber (PI 183967)	cgycpiB074
Cucsa.075950	CmaCh18G006760	Cucurbita maxima (Rimu)	cgycmaB0125
Cucsa.075950	CmaCh04G018530	Cucurbita maxima (Rimu)	cgycmaB0126
Cucsa.075950	CmoCh04G019480	Cucurbita moschata (Rifu)	cgycmoB0123
Cucsa.075950	CmoCh18G006460	Cucurbita moschata (Rifu)	cgycmoB0120
Cucsa.075950	Lsi04G007050	Bottle gourd (USVL1VR-Ls)	cgylsiB076
Cucsa.075950	Cp4.1LG09g05790	Cucurbita pepo (Zucchini)	cgycpeB0120
Cucsa.075950	Cp4.1LG01g16320	Cucurbita pepo (Zucchini)	cgycpeB0123
Cucsa.075950	MELO3C011841.2	Melon (DHL92) v3.6.1	cgymedB076
Cucsa.075950	CsaV3_5G029960	Cucumber (Chinese Long) v3	cgycucB076
Cucsa.075950	Cla97C11G219360	Watermelon (97103) v2	cgywmbB072
Cucsa.075950	BhiUN916G6	Wax gourd	cgywgoB085
Cucsa.075950	Carg24410	Silver-seed gourd	carcgyB0166
Cucsa.075950	Carg21210	Silver-seed gourd	carcgyB0772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.075950	Cucumber (Chinese Long) v3	cgycucB077
Cucsa.075950	Wild cucumber (PI 183967)	cgycpiB076