Cucsa.075760 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.075760
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Lipid transfer protein
Location	scaffold00789 : 378454 .. 379924 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGCGGAAGAAAGGTGAGTGTGGTTTTAGCGGTGGTGGCGGTGTGTTTATTAGGAAGGGTGGTACCGGGACGAGCACAGGAGGATGATTTGAAAGAGGAGTGCAGCAATGACTTCGAGAAAGTGGTGAGTTGTTTCGCGTACGCGACGGGGAAAGCGGCGGCGCCGACGGAGGAATGTTGTGATTCGATTGAAGGTATAAAAGAAAGTAAGCCAAAGTGCTTGTGTTTCTTCATACAACAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATAATGGGAATCAGCAGATCAAGAGCTTAGGGATTCAAGAGATTAAGCTTTTACAGCTTCCTTCTGTTTGTCACTTGAAAAACTCCAGTGTTAGCTATTGCCCAAGTAATTTCTCTTCCAAACCCTCTTTCTTTTCTTTTAGGTTGTTTGATTATTTAGTAGCTATTTGGTTTTTGGTTTTtGGTTTTtCACAAGTAATTAATTAAGGAATAAAAGTTGAAGAACTATTTTTTCTTCTATATTTTGTAAAATAGTTGCAGTTTTCTGTTGTTTTCAAGAATAATAAAAAaTAGTAGAATCTGATTTTTtAAATTTATTGTTTTTAGAAACCATATTTGAGTTTAGCACTTTCAATTTAAACAATTATTTTAAGTGTTTTTtCTGGGGGTTTTTtAAAGTGTGTAAGTTTGTTTAATTATTTGTTTTTtGGTTCATCACATTTTTTGTCTCACTATATTTTAAATCCAAAATTTTCATTTTAATTTTCAAATAAAAaTAAATTTAATTGTCTAGAAAAATAAATGAATATTGATAGACTTTGAATCTGAAATTTCATAATTTGTACTTTTCATTTACGTAAATAATTTCCTTTCTTCTTATTATTATTTTGGGCAGAGCTTCTCGGGTTACCGGCGAATTCACCGGATGCTGCTATTTTTAGCAATTCGACCTCACCGGCGACACCGGCGTCTGCAACGACGACGAGGACAAGTCCCGACGGAAATGCTGGAAGTAAGACAGTAGCCAATTCTCCAGTTGGTTTGATGGTGGTGGCGATGGTCGTCGTAATCTCATTTACGGCATTTCTTTCGCCGATCACTTACGCCTGA

mRNA sequence

ATGAAGAGCGGAAGAAAGGTGAGTGTGGTTTTAGCGGTGGTGGCGGTGTGTTTATTAGGAAGGGTGGTACCGGGACGAGCACAGGAGGATGATTTGAAAGAGGAGTGCAGCAATGACTTCGAGAAAGTGGTGAGTTGTTTCGCGTACGCGACGGGGAAAGCGGCGGCGCCGACGGAGGAATGTTGTGATTCGATTGAAGGTATAAAAGAAAGGATTCAAGAGATTAAGCTTTTACAGCTTCCTTCTGTTTGTCACTTGAAAAACTCCAGTGTTAGCTATTGCCCAAAGCTTCTCGGGTTACCGGCGAATTCACCGGATGCTGCTATTTTTAGCAATTCGACCTCACCGGCGACACCGGCGTCTGCAACGACGACGAGGACAAGTCCCGACGGAAATGCTGGAAGTAAGACAGTAGCCAATTCTCCAGTTGGTTTGATGGTGGTGGCGATGGTCGTCGTAATCTCATTTACGGCATTTCTTTCGCCGATCACTTACGCCTGA

Coding sequence (CDS)

ATGAAGAGCGGAAGAAAGGTGAGTGTGGTTTTAGCGGTGGTGGCGGTGTGTTTATTAGGAAGGGTGGTACCGGGACGAGCACAGGAGGATGATTTGAAAGAGGAGTGCAGCAATGACTTCGAGAAAGTGGTGAGTTGTTTCGCGTACGCGACGGGGAAAGCGGCGGCGCCGACGGAGGAATGTTGTGATTCGATTGAAGGTATAAAAGAAAGGATTCAAGAGATTAAGCTTTTACAGCTTCCTTCTGTTTGTCACTTGAAAAACTCCAGTGTTAGCTATTGCCCAAAGCTTCTCGGGTTACCGGCGAATTCACCGGATGCTGCTATTTTTAGCAATTCGACCTCACCGGCGACACCGGCGTCTGCAACGACGACGAGGACAAGTCCCGACGGAAATGCTGGAAGTAAGACAGTAGCCAATTCTCCAGTTGGTTTGATGGTGGTGGCGATGGTCGTCGTAATCTCATTTACGGCATTTCTTTCGCCGATCACTTACGCCTGA

Protein sequence

MKSGRKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSIEGIKERIQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFTAFLSPITYA*

Homology

[Close]

BLAST of Cucsa.075760 vs. Swiss-Prot
Match: LTPG1_ARATH (Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LTPG1 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-24
Identity = 69/182 (37.91%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 7   VSVVLAVVA-VCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSI 66
           V V + +VA +       PG A    L +EC+ DF+KV  C  +ATGKA  P+++CCD++
Sbjct: 9   VLVTMTIVASIAAAAPAAPGGA----LADECNQDFQKVTLCLDFATGKATIPSKKCCDAV 68

Query: 67  EGIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPA 126
           E IKER                       +QE KL+QLP+ C L N+S++ CPKLLG+  
Sbjct: 69  EDIKERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISP 128

Query: 127 NSPDAAIFSNST----------SPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVV 155
           +SPDAA+F+N+           SPATPA++T    S     G   VA + V LM V+ V+
Sbjct: 129 SSPDAAVFTNNATTTPVAPAGKSPATPATSTDKGGSASAKDGHAVVALA-VALMAVSFVL 185

[Close]

BLAST of Cucsa.075760 vs. Swiss-Prot
Match: YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 49/163 (30.06%), Postives = 73/163 (44.79%), Query Frame = 1


Query: 5   RKVSVVLAVVAVCLLGRVVPGR-AQEDDLKEECSNDFEKVVSCFAYATGKAAAPTE---- 64
           RK+ V+   +A+ ++  VV    A +   KEEC+     + +C  Y  GKA +PT     
Sbjct: 4   RKIKVMATAIALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCS 63

Query: 65  ----------ECCDSIEGIKER--------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLP 124
                     +C   I  I+ER        +     L LPSVCH   + ++ CP LL L 
Sbjct: 64  GLKQVINSDMKCLCMI--IQERNDPDLGLQVNVSLALALPSVCHA-TADITKCPALLHLD 123

Query: 125 ANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVG 145
            NSPDA +F      A   + T + ++P G+A   T  +S  G
Sbjct: 124 PNSPDAQVFYQL---AKGLNETVSASAPTGSASEPTSMSSTPG 160

[Close]

BLAST of Cucsa.075760 vs. TrEMBL
Match: A0A0A0KV96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589340 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.9e-81
Identity = 164/189 (86.77%), Postives = 164/189 (86.77%), Query Frame = 1


Query: 1   MKSGRKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEE 60
           MKSGRKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEE
Sbjct: 1   MKSGRKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEE 60

Query: 61  CCDSIEGIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKL 120
           CCDSIE IKE                        IQEIKLLQLPSVCHLKNSSVSYCPKL
Sbjct: 61  CCDSIEDIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSYCPKL 120

Query: 121 LGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFT 167
           LGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFT
Sbjct: 121 LGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFT 180

[Close]

BLAST of Cucsa.075760 vs. TrEMBL
Match: B9GZQ5_POPTR (GPI-anchored protein OS=Populus trichocarpa GN=POPTR_0003s17090g PE=4 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.8e-26
Identity = 73/179 (40.78%), Postives = 103/179 (57.54%), Query Frame = 1


Query: 7   VSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSIE 66
           + V+L       L R V G    D + EECS+DF+K++ C +YA+GKA  PT++CC S++
Sbjct: 9   LGVLLLFAPSASLFRAVNG----DGVTEECSSDFQKLMGCLSYASGKANTPTKDCCLSVQ 68

Query: 67  GIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPAN 126
            IKE                        IQE KLLQLP+ C L+N+S+S+CPKLLG+  +
Sbjct: 69  NIKESDPKCLCFIMQQTSNGSAPIKNLGIQEAKLLQLPTACQLQNASLSFCPKLLGISPS 128

Query: 127 SPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFTAFLSP 163
           SPDAAIF+N+++ ATPA++T+T TS    AG  +       L  + M+V   F  F SP
Sbjct: 129 SPDAAIFTNASTTATPAASTSTGTSQSEKAGDSSGFQHRPHLAGLFMIVAAIF-VFASP 182

[Close]

BLAST of Cucsa.075760 vs. TrEMBL
Match: A0A0M3SGG1_GOSAR (Lipid transfer protein OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-25
Identity = 71/157 (45.22%), Postives = 93/157 (59.24%), Query Frame = 1


Query: 9   VVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSIEGI 68
           +VLA++ V      V   A E  L  ECS DF+ V++C ++A GKAA+P++ECC+S+ GI
Sbjct: 7   IVLALMVV--FAATVVTAADESGLANECSKDFQSVMTCLSFAQGKAASPSKECCNSVAGI 66

Query: 69  KER------------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANS 128
           KE                         +QE KL QLPS C LKN+SVS CPKLLGL  +S
Sbjct: 67  KENKPKCLCYILQQTQTSGAQNLKSLGVQEDKLFQLPSACQLKNASVSDCPKLLGLSPSS 126

Query: 129 PDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANS 142
           PDAAIF+NS+S AT  S +TT  +P  +A  KT + S
Sbjct: 127 PDAAIFTNSSSKATTPSTSTTTATP-SSAADKTDSKS 160

[Close]

BLAST of Cucsa.075760 vs. TrEMBL
Match: A0A0M5ILN7_GOSHI (LTPG1 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-25
Identity = 71/157 (45.22%), Postives = 92/157 (58.60%), Query Frame = 1


Query: 9   VVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSIEGI 68
           +VLA+  V      V   A E  L  ECS DF+ V++C ++A GKAA+P++ECC+S+ GI
Sbjct: 7   IVLALTVV--FAATVVTAADESGLANECSKDFQSVMTCLSFAQGKAASPSKECCNSVAGI 66

Query: 69  KER------------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANS 128
           KE                         +QE KL QLPS C LKN+SVS CPKLLGL  +S
Sbjct: 67  KENKPKCLCYILQQTQTSGAQNLKSLGVQEDKLFQLPSACQLKNASVSDCPKLLGLSPSS 126

Query: 129 PDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANS 142
           PDAAIF+NS+S AT  S +TT  +P  +A  KT + S
Sbjct: 127 PDAAIFTNSSSKATTPSTSTTTATP-SSAADKTDSKS 160

[Close]

BLAST of Cucsa.075760 vs. TrEMBL
Match: W9RIS8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015489 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.9e-25
Identity = 75/187 (40.11%), Postives = 108/187 (57.75%), Query Frame = 1


Query: 7   VSVVLAVVAVCLLGRVVPGR----AQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECC 66
           + +++ VVA  LL  V  G     A     +E+C  DF+K+  C  YATGKAA PT++CC
Sbjct: 1   MKMLVVVVAAALLVVVFLGSHEVAAAAASTQEKCGADFQKLAVCLTYATGKAAVPTKDCC 60

Query: 67  DSIEGIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLG 126
           D ++GIKE                        IQE KLL LP+ C LKN++++ CPKLLG
Sbjct: 61  DLVKGIKESEPECLCLIMQQTHKGNDQIKNMGIQESKLLSLPTACALKNATLAECPKLLG 120

Query: 127 LPANSPDAAIFSN-STSPATPAS----ATTTRTSPDGNAGSKTVAN-SPVGLMVVAMVVV 161
           LPANSPDAAIF+N ST+ ATP +    A+ ++TS D ++G++   + + +  M +A+  +
Sbjct: 121 LPANSPDAAIFTNASTASATPTAKGTGASQSQTSKDSSSGARLGTHLASLPAMAMAVTAI 180

[Close]

BLAST of Cucsa.075760 vs. TAIR10
Match: AT1G27950.1 (AT1G27950.1 glycosylphosphatidylinositol-anchored lipid protein transfer 1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 69/182 (37.91%), Postives = 98/182 (53.85%), Query Frame = 1


Query: 7   VSVVLAVVA-VCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSI 66
           V V + +VA +       PG A    L +EC+ DF+KV  C  +ATGKA  P+++CCD++
Sbjct: 9   VLVTMTIVASIAAAAPAAPGGA----LADECNQDFQKVTLCLDFATGKATIPSKKCCDAV 68

Query: 67  EGIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPA 126
           E IKER                       +QE KL+QLP+ C L N+S++ CPKLLG+  
Sbjct: 69  EDIKERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISP 128

Query: 127 NSPDAAIFSNST----------SPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVV 155
           +SPDAA+F+N+           SPATPA++T    S     G   VA + V LM V+ V+
Sbjct: 129 SSPDAAVFTNNATTTPVAPAGKSPATPATSTDKGGSASAKDGHAVVALA-VALMAVSFVL 185

[Close]

BLAST of Cucsa.075760 vs. TAIR10
Match: AT2G44300.1 (AT2G44300.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-13
Identity = 49/169 (28.99%), Postives = 75/169 (44.38%), Query Frame = 1


Query: 5   RKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDS 64
           RK++++   +A+ ++  VV     +   KEEC+     + +C  Y  G+A +PT +CC  
Sbjct: 4   RKINLMATAIALIVVAMVVAAADDKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSG 63

Query: 65  IEGIKE--------------------RIQEIKLLQLPSVCHLKNSSVSYCPKLLGLPANS 124
           ++ +                      +I     L LPSVCH   + V+ CP LL L  NS
Sbjct: 64  LKQVLNSNKKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAA-ADVTKCPALLHLDPNS 123

Query: 125 PDAAIF------SNSTSPAT--------PASATTTRTSPDGNAGSKTVA 140
           PDA +F       N T PA+        P S + T  S DGN   +T +
Sbjct: 124 PDAQVFYQLAKGLNKTGPASAPTGSSPGPISISPTSGSDDGNNSGRTTS 171

[Close]

BLAST of Cucsa.075760 vs. TAIR10
Match: AT2G44290.1 (AT2G44290.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 49/163 (30.06%), Postives = 73/163 (44.79%), Query Frame = 1


Query: 5   RKVSVVLAVVAVCLLGRVVPGR-AQEDDLKEECSNDFEKVVSCFAYATGKAAAPTE---- 64
           RK+ V+   +A+ ++  VV    A +   KEEC+     + +C  Y  GKA +PT     
Sbjct: 4   RKIKVMATAIALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCS 63

Query: 65  ----------ECCDSIEGIKER--------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLP 124
                     +C   I  I+ER        +     L LPSVCH   + ++ CP LL L 
Sbjct: 64  GLKQVINSDMKCLCMI--IQERNDPDLGLQVNVSLALALPSVCHA-TADITKCPALLHLD 123

Query: 125 ANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVG 145
            NSPDA +F      A   + T + ++P G+A   T  +S  G
Sbjct: 124 PNSPDAQVFYQL---AKGLNETVSASAPTGSASEPTSMSSTPG 160

[Close]

BLAST of Cucsa.075760 vs. TAIR10
Match: AT3G58550.1 (AT3G58550.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 34/140 (24.29%), Postives = 58/140 (41.43%), Query Frame = 1


Query: 36  CSNDFEKVVSCFAYATGKAAAPTEECCDSIE----------------------GIKERIQ 95
           C +    + SC  + T KA AP   CC +++                      G+  ++ 
Sbjct: 38  CQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKIDKGQTRKCLCTLVKDRDDPGLGFKVD 97

Query: 96  EIKLLQLPSVCHLKNSSVSYCPKLLGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNA 154
             + + LPS CH+  +++S CP LL L  +SP + IF   T     +S T    +   ++
Sbjct: 98  ANRAMSLPSACHVP-ANISQCPDLLHLLPDSPASQIFKQFTE---SSSQTVGHKAVSTSS 157

[Close]

BLAST of Cucsa.075760 vs. NCBI nr
Match: gi|778704575|ref|XP_004135333.2| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 4.1e-81
Identity = 164/189 (86.77%), Postives = 164/189 (86.77%), Query Frame = 1


Query: 1   MKSGRKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEE 60
           MKSGRKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEE
Sbjct: 1   MKSGRKVSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEE 60

Query: 61  CCDSIEGIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKL 120
           CCDSIE IKE                        IQEIKLLQLPSVCHLKNSSVSYCPKL
Sbjct: 61  CCDSIEDIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSYCPKL 120

Query: 121 LGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFT 167
           LGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFT
Sbjct: 121 LGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFT 180

[Close]

BLAST of Cucsa.075760 vs. NCBI nr
Match: gi|659090460|ref|XP_008446028.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 157/193 (81.35%), Postives = 161/193 (83.42%), Query Frame = 1


Query: 1   MKSGRKV----SVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAA 60
           MKSGRKV     VVLAVVAVCLLGRVVPGRA+E++LKEECSNDFEKVVSCFAYATGKAAA
Sbjct: 1   MKSGRKVMRSAGVVLAVVAVCLLGRVVPGRAEEENLKEECSNDFEKVVSCFAYATGKAAA 60

Query: 61  PTEECCDSIEGIKER-----------------------IQEIKLLQLPSVCHLKNSSVSY 120
           PTEECCDSIEGIKE                        IQEIKLLQLPSVCHLKNSSVSY
Sbjct: 61  PTEECCDSIEGIKESKPKCLCFFIQQTHNGNQQIKSLGIQEIKLLQLPSVCHLKNSSVSY 120

Query: 121 CPKLLGLPANSPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVV 167
           CPKLLGLPANSPDAAIFSN TSPATPASATTTRTSPDGNAG+KTVANSPVGLM VAMVVV
Sbjct: 121 CPKLLGLPANSPDAAIFSNLTSPATPASATTTRTSPDGNAGTKTVANSPVGLMAVAMVVV 180

[Close]

BLAST of Cucsa.075760 vs. NCBI nr
Match: gi|1009152860|ref|XP_015894325.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Ziziphus jujuba])

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 77/185 (41.62%), Postives = 112/185 (60.54%), Query Frame = 1


Query: 7   VSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSIE 66
           +  VL +++V   G V  G      ++E+C +DF+KV  C  YATGKAA PT++CCDS++
Sbjct: 2   MKAVLLLLSVVGCGMV--GITMGAGIEEKCGSDFQKVAVCLNYATGKAATPTKDCCDSVK 61

Query: 67  GIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPAN 126
           GIK++                       IQE KLLQLPS C L N+S+S CPKLLGL  +
Sbjct: 62  GIKDKDPECLCYIMEQTHKGNEQIKNMGIQEAKLLQLPSACSLTNASLSDCPKLLGLSPS 121

Query: 127 SPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVG-------LMVVAMVVVISF 162
           SPDAAIF+N+++P TPA+++TT T+P   + S+   +S VG       ++++AM + I F
Sbjct: 122 SPDAAIFTNASTP-TPAASSTT-TTPASTSSSEKADSSSVGTNLGPHVVVLLAMAMGIVF 181

[Close]

BLAST of Cucsa.075760 vs. NCBI nr
Match: gi|743818840|ref|XP_011020739.1| (PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica])

HSP 1 Score: 125.9 bits (315), Expect = 6.4e-26
Identity = 73/179 (40.78%), Postives = 103/179 (57.54%), Query Frame = 1


Query: 7   VSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSIE 66
           + V+L   +   L R V G    D + EECS+DF+KV+ C +YATGKA  PT++CC S++
Sbjct: 9   LGVLLLFASSASLFRAVNG----DGVTEECSSDFQKVMGCLSYATGKANTPTKDCCLSVQ 68

Query: 67  GIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPAN 126
            IKE                        IQE KLLQLP+ C L+N+S+S+CPKLLG+  +
Sbjct: 69  NIKESDPKCLCFIMQQTSNGSAQIKNLGIQEAKLLQLPTACQLQNASLSFCPKLLGISPS 128

Query: 127 SPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFTAFLSP 163
           SPDAAIF+N+++ A PA++T+T TS    AG  +       L  +  V+V +   F SP
Sbjct: 129 SPDAAIFTNASTTAIPAASTSTGTSQSEKAGDSSGFRHRTHLAGL-FVIVAAIFVFASP 182

[Close]

BLAST of Cucsa.075760 vs. NCBI nr
Match: gi|566163133|ref|XP_002303794.2| (GPI-anchored protein precursor [Populus trichocarpa])

HSP 1 Score: 125.6 bits (314), Expect = 8.4e-26
Identity = 73/179 (40.78%), Postives = 103/179 (57.54%), Query Frame = 1


Query: 7   VSVVLAVVAVCLLGRVVPGRAQEDDLKEECSNDFEKVVSCFAYATGKAAAPTEECCDSIE 66
           + V+L       L R V G    D + EECS+DF+K++ C +YA+GKA  PT++CC S++
Sbjct: 9   LGVLLLFAPSASLFRAVNG----DGVTEECSSDFQKLMGCLSYASGKANTPTKDCCLSVQ 68

Query: 67  GIKER-----------------------IQEIKLLQLPSVCHLKNSSVSYCPKLLGLPAN 126
            IKE                        IQE KLLQLP+ C L+N+S+S+CPKLLG+  +
Sbjct: 69  NIKESDPKCLCFIMQQTSNGSAPIKNLGIQEAKLLQLPTACQLQNASLSFCPKLLGISPS 128

Query: 127 SPDAAIFSNSTSPATPASATTTRTSPDGNAGSKTVANSPVGLMVVAMVVVISFTAFLSP 163
           SPDAAIF+N+++ ATPA++T+T TS    AG  +       L  + M+V   F  F SP
Sbjct: 129 SPDAAIFTNASTTATPAASTSTGTSQSEKAGDSSGFQHRPHLAGLFMIVAAIF-VFASP 182

The following BLAST results are available for this feature:

BLAST of Cucsa.075760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LTPG1_ARATH	3.5e-24	37.91	Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LT...	[more]
YLS3_ARATH	2.1e-08	30.06	Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1	[more]

BLAST of Cucsa.075760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV96_CUCSA	2.9e-81	86.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589340 PE=4 SV=1	[more]
B9GZQ5_POPTR	5.8e-26	40.78	GPI-anchored protein OS=Populus trichocarpa GN=POPTR_0003s17090g PE=4 SV=2	[more]
A0A0M3SGG1_GOSAR	1.7e-25	45.22	Lipid transfer protein OS=Gossypium arboreum PE=2 SV=1	[more]
A0A0M5ILN7_GOSHI	2.2e-25	45.22	LTPG1 OS=Gossypium hirsutum PE=2 SV=1	[more]
W9RIS8_9ROSA	4.9e-25	40.11	Uncharacterized protein OS=Morus notabilis GN=L484_015489 PE=4 SV=1	[more]

BLAST of Cucsa.075760 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27950.1	2.0e-25	37.91	glycosylphosphatidylinositol-anchored lipid protein transfer 1	[more]
AT2G44300.1	1.0e-13	28.99	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT2G44290.1	1.2e-09	30.06	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT3G58550.1	1.2e-06	24.29	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of Cucsa.075760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778704575\|ref\|XP_004135333.2\|	4.1e-81	86.77	PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis sativus]	[more]
gi\|659090460\|ref\|XP_008446028.1\|	2.3e-76	81.35	PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Cucumis melo]	[more]
gi\|1009152860\|ref\|XP_015894325.1\|	2.9e-26	41.62	PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Ziziphus juj...	[more]
gi\|743818840\|ref\|XP_011020739.1\|	6.4e-26	40.78	PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euph...	[more]
gi\|566163133\|ref\|XP_002303794.2\|	8.4e-26	40.78	GPI-anchored protein precursor [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044464	cell part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.075760.1	Cucsa.075760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 35..94 score: 3.6
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 35..76 score: 1.
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 9..160 score: 2.7
None	No IPR available	PANTHER	PTHR33044:SF7	NON-SPECIFIC LIPID TRANSFER PROTEIN GPI-ANCHORED 1	coord: 9..160 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.075760	Cla022958	Watermelon (97103) v1	cgywmB080
Cucsa.075760	Csa5G589340	Cucumber (Chinese Long) v2	cgycuB073
Cucsa.075760	MELO3C011860	Melon (DHL92) v3.5.1	cgymeB077
Cucsa.075760	ClCG11G013600	Watermelon (Charleston Gray)	cgywcgB076
Cucsa.075760	CSPI05G21360	Wild cucumber (PI 183967)	cgycpiB076
Cucsa.075760	CmaCh18G006900	Cucurbita maxima (Rimu)	cgycmaB0125
Cucsa.075760	CmaCh04G018410	Cucurbita maxima (Rimu)	cgycmaB0126
Cucsa.075760	CmoCh04G019380	Cucurbita moschata (Rifu)	cgycmoB0123
Cucsa.075760	CmoCh18G006320	Cucurbita moschata (Rifu)	cgycmoB0120
Cucsa.075760	Lsi04G006880	Bottle gourd (USVL1VR-Ls)	cgylsiB076
Cucsa.075760	Cp4.1LG09g05880	Cucurbita pepo (Zucchini)	cgycpeB0120
Cucsa.075760	Cp4.1LG01g16110	Cucurbita pepo (Zucchini)	cgycpeB0123
Cucsa.075760	MELO3C011860.2	Melon (DHL92) v3.6.1	cgymedB076
Cucsa.075760	CsaV3_5G030220	Cucumber (Chinese Long) v3	cgycucB076
Cucsa.075760	Cla97C11G219520	Watermelon (97103) v2	cgywmbB072
Cucsa.075760	Bhi07G001537	Wax gourd	cgywgoB087
Cucsa.075760	Carg24398	Silver-seed gourd	carcgyB0166
Cucsa.075760	Carg21223	Silver-seed gourd	carcgyB0772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.075760	Cucurbita maxima (Rimu)	cgycmaB0123
Cucsa.075760	Cucurbita moschata (Rifu)	cgycmoB0119
Cucsa.075760	Cucurbita pepo (Zucchini)	cgycpeB0125