Cucsa.074690 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.074690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00785 : 594480 .. 595147 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACGATGGACTTGGTTTCGGTTCCATGTCTTCGCCAACACCTGATCCGAGTGCTGGCCCAGTCGATAGAGGGGTGAGCAATTTCGGTATCGGTCCGAAAGCCGGACCGAGAGCTGGCCTAGGAGTTGGAGGAATAAGTAATGTGGATGATGGTTCAGATCCTGGACCGAAAGCTGGCCCAGGAGTCAAAGAAGAGATGAGCAATGTCGGTGCTGGTCCGAGAGTACCTAAGTTAGGGGTAAGTAGTATTGAGGCCGGTCCAAGAGCTGGGCCTAAAGGTGTTGATCCAATTGTTACTGGACTCGGTGTCGGAGTCGGAGTCAATTTGCCTCCTATATTTGGAGGTCCAAAAATGGGGATAAGGCCGGGACCAGGAGGGTGGTATGGGCCTGGGCCAATAATACAAGAACCGTACAATAATTGCATGTTGGGCTATGTTTGTCCAACAAATAGGCCTTGGGCATGCGGCAAAGTTGGATATGGACTTTGTGAGTCTTATAACTTTCGTCCATTGTCTGCTTCTACGGAATTGCATGATGTTAAAATCAATTGGGCCAAAAGCAAGTCTGTTGAAACCGCCCAACATGGTGAATCTGGACCAGGTATTCACATTGACTCAGCCCACTAAGAAGGCCCAACATGGTGTCTAATCTATACGTTTTCTTCAC

mRNA sequence

CGACGATGGACTTGGTTTCGGTTCCATGTCTTCGCCAACACCTGATCCGAGTGCTGGCCCAGTCGATAGAGGGGTGAGCAATTTCGGTATCGGTCCGAAAGCCGGACCGAGAGCTGGCCTAGGAGTTGGAGGAATAAGTAATGTGGATGATGGTTCAGATCCTGGACCGAAAGCTGGCCCAGGAGTCAAAGAAGAGATGAGCAATGTCGGTGCTGGTCCGAGAGTACCTAAGTTAGGGGTAAGTAGTATTGAGGCCGGTCCAAGAGCTGGGCCTAAAGGTGTTGATCCAATTGTTACTGGACTCGGTGTCGGAGTCGGAGTCAATTTGCCTCCTATATTTGGAGGTCCAAAAATGGGGATAAGGCCGGGACCAGGAGGGTGGTATGGGCCTGGGCCAATAATACAAGAACCGTACAATAATTGCATGTTGGGCTATGTTTGTCCAACAAATAGGCCTTGGGCATGCGGCAAAGTTGGATATGGACTTTGTGAGTCTTATAACTTTCGTCCATTGTCTGCTTCTACGGAATTGCATGATGTTAAAATCAATTGGGCCAAAAGCAAGTCTGTTGAAACCGCCCAACATGGTGAATCTGGACCAGGTATTCACATTGACTCAGCCCACTAAGAAGGCCCAACATGGTGTCTAATCTATACGTTTTCTTCAC

Coding sequence (CDS)

ATGTCTTCGCCAACACCTGATCCGAGTGCTGGCCCAGTCGATAGAGGGGTGAGCAATTTCGGTATCGGTCCGAAAGCCGGACCGAGAGCTGGCCTAGGAGTTGGAGGAATAAGTAATGTGGATGATGGTTCAGATCCTGGACCGAAAGCTGGCCCAGGAGTCAAAGAAGAGATGAGCAATGTCGGTGCTGGTCCGAGAGTACCTAAGTTAGGGGTAAGTAGTATTGAGGCCGGTCCAAGAGCTGGGCCTAAAGGTGTTGATCCAATTGTTACTGGACTCGGTGTCGGAGTCGGAGTCAATTTGCCTCCTATATTTGGAGGTCCAAAAATGGGGATAAGGCCGGGACCAGGAGGGTGGTATGGGCCTGGGCCAATAATACAAGAACCGTACAATAATTGCATGTTGGGCTATGTTTGTCCAACAAATAGGCCTTGGGCATGCGGCAAAGTTGGATATGGACTTTGTGAGTCTTATAACTTTCGTCCATTGTCTGCTTCTACGGAATTGCATGATGTTAAAATCAATTGGGCCAAAAGCAAGTCTGTTGAAACCGCCCAACATGGTGAATCTGGACCAGGTATTCACATTGACTCAGCCCACTAA

Protein sequence

MSSPTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSNVGAGPRVPKLGVSSIEAGPRAGPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWYGPGPIIQEPYNNCMLGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSKSVETAQHGESGPGIHIDSAH*
Homology
[Close]
BLAST of Cucsa.074690 vs. TrEMBL
Match: A0A0A0L7X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104850 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 3.0e-117
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MSSPTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSN 60
           MSSPTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSN
Sbjct: 37  MSSPTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSN 96

Query: 61  VGAGPRVPKLGVSSIEAGPRAGPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWY 120
           VGAGPRVPKLGVSSIEAGPRAGPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWY
Sbjct: 97  VGAGPRVPKLGVSSIEAGPRAGPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWY 156

Query: 121 GPGPIIQEPYNNCMLGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSK 180
           GPGPIIQEPYNNCMLGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSK
Sbjct: 157 GPGPIIQEPYNNCMLGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSK 216

Query: 181 SVETAQHGESGPGIHIDSAH 201
           SVETAQHGESGPGIHIDSAH
Sbjct: 217 SVETAQHGESGPGIHIDSAH 236

[Close]
BLAST of Cucsa.074690 vs. TrEMBL
Match: A0A091VXI0_OPIHO (Uncharacterized protein (Fragment) OS=Opisthocomus hoazin GN=N306_09836 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 59/141 (41.84%), Postives = 72/141 (51.06%), Query Frame = 1 

Query: 3   SPTPDPSAGPVD-RGVS-NFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKE---E 62
           +P   PSAGPV   GVS   GI P AGP  G GVG  + ++ G+ PGP AG  V++    
Sbjct: 22  APGGSPSAGPVPGAGVSLGPGIDPGAGPSPGAGVGPGAGINPGASPGPDAGASVRDGPVP 81

Query: 63  MSNVGAGPRVPKLGVS---SIEAGPRAGP-KGVDP---IVTGLGVGVGV--NLPPIF--- 122
            S+   GP     GVS   S+ AG R GP  G+DP   + +G GV  GV   L P     
Sbjct: 82  GSDPDLGP-----GVSPGPSVGAGVRDGPAPGIDPGPGVSSGPGVNPGVRDGLGPGMDPG 141

Query: 123 GGPKMGIRPGPGGWYGPGPII 127
            G   G+ PGPG   GP P I
Sbjct: 142 AGASAGVSPGPGVRDGPCPRI 157

[Close]
BLAST of Cucsa.074690 vs. TrEMBL
Match: F6WKH8_ORNAN (Uncharacterized protein OS=Ornithorhynchus anatinus PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 53/121 (43.80%), Postives = 58/121 (47.93%), Query Frame = 1 

Query: 10  AGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSNVGAGPRV-P 69
           AGP    V+  G G   GPRAG G G  +    G   GP+AGPG     +  GAGPR  P
Sbjct: 101 AGPK---VAGAGPGAGVGPRAGPGAGPRARPGPGPGAGPRAGPG-----TGPGAGPRAGP 160

Query: 70  KLGVSSIEAGPRAGP-KGVDPIV-TGLGVGVGVNLPPIFG---GPKMGIRPGPGGWYGPG 125
             G     AGPRAGP  G  P    G G G G    P  G   GP+ G  PGPG   GPG
Sbjct: 161 GPGPG---AGPRAGPGPGPGPRPGPGPGPGPGTGPGPRAGPGPGPRAGPGPGPGPRAGPG 210

[Close]
BLAST of Cucsa.074690 vs. TrEMBL
Match: F6WKH8_ORNAN (Uncharacterized protein OS=Ornithorhynchus anatinus PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 51/136 (37.50%), Postives = 55/136 (40.44%), Query Frame = 1 

Query: 4   PTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSNVGA 63
           P P P  GP  R       GP  GPRAG G G       G  PGP+AGPG        G 
Sbjct: 176 PGPGPGTGPGPRA------GPGPGPRAGPGPGPGPRAGPGPGPGPRAGPG-------AGP 235

Query: 64  GPRV-PKLGVSSIEAGPRAGPKGVDPIVTGLGV--GVGVNLPPIFG-------GPKMGIR 123
           GP   P  G      GP+AGP        G G   G G    P  G       GP +G R
Sbjct: 236 GPGTGPGPGPG---PGPKAGP--------GPGTGPGTGQRAGPAAGPKAAPGAGPGVGQR 287

Query: 124 PGPGGWYGPGPIIQEP 130
            GPG   GPG  I +P
Sbjct: 296 AGPGPGAGPGAAITKP 287

[Close]
BLAST of Cucsa.074690 vs. NCBI nr
Match: gi|700201098|gb|KGN56231.1| (hypothetical protein Csa_3G104850 [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 4.3e-117
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 

Query: 1   MSSPTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSN 60
           MSSPTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSN
Sbjct: 37  MSSPTPDPSAGPVDRGVSNFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKEEMSN 96

Query: 61  VGAGPRVPKLGVSSIEAGPRAGPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWY 120
           VGAGPRVPKLGVSSIEAGPRAGPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWY
Sbjct: 97  VGAGPRVPKLGVSSIEAGPRAGPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGGWY 156

Query: 121 GPGPIIQEPYNNCMLGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSK 180
           GPGPIIQEPYNNCMLGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSK
Sbjct: 157 GPGPIIQEPYNNCMLGYVCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSK 216

Query: 181 SVETAQHGESGPGIHIDSAH 201
           SVETAQHGESGPGIHIDSAH
Sbjct: 217 SVETAQHGESGPGIHIDSAH 236

[Close]
BLAST of Cucsa.074690 vs. NCBI nr
Match: gi|677547123|gb|KFR08087.1| (hypothetical protein N306_09836, partial [Opisthocomus hoazin])

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 59/141 (41.84%), Postives = 72/141 (51.06%), Query Frame = 1 

Query: 3   SPTPDPSAGPVD-RGVS-NFGIGPKAGPRAGLGVGGISNVDDGSDPGPKAGPGVKE---E 62
           +P   PSAGPV   GVS   GI P AGP  G GVG  + ++ G+ PGP AG  V++    
Sbjct: 22  APGGSPSAGPVPGAGVSLGPGIDPGAGPSPGAGVGPGAGINPGASPGPDAGASVRDGPVP 81

Query: 63  MSNVGAGPRVPKLGVS---SIEAGPRAGP-KGVDP---IVTGLGVGVGV--NLPPIF--- 122
            S+   GP     GVS   S+ AG R GP  G+DP   + +G GV  GV   L P     
Sbjct: 82  GSDPDLGP-----GVSPGPSVGAGVRDGPAPGIDPGPGVSSGPGVNPGVRDGLGPGMDPG 141

Query: 123 GGPKMGIRPGPGGWYGPGPII 127
            G   G+ PGPG   GP P I
Sbjct: 142 AGASAGVSPGPGVRDGPCPRI 157

The following BLAST results are available for this feature:
BLAST of Cucsa.074690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X7_CUCSA3.0e-117100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104850 PE=4 SV=1[more]
A0A091VXI0_OPIHO2.3e-0841.84Uncharacterized protein (Fragment) OS=Opisthocomus hoazin GN=N306_09836 PE=4 SV=... [more]
F6WKH8_ORNAN1.9e-0743.80Uncharacterized protein OS=Ornithorhynchus anatinus PE=4 SV=1[more]
F6WKH8_ORNAN2.8e-0637.50Uncharacterized protein OS=Ornithorhynchus anatinus PE=4 SV=1[more]
BLAST of Cucsa.074690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201098|gb|KGN56231.1|4.3e-117100.00hypothetical protein Csa_3G104850 [Cucumis sativus][more]
gi|677547123|gb|KFR08087.1|3.3e-0841.84hypothetical protein N306_09836, partial [Opisthocomus hoazin][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.074690.1Cucsa.074690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.074690Cla011778Watermelon (97103) v1cgywmB077
Cucsa.074690Csa3G104850Cucumber (Chinese Long) v2cgycuB071
Cucsa.074690MELO3C016522Melon (DHL92) v3.5.1cgymeB076
Cucsa.074690ClCG10G006840Watermelon (Charleston Gray)cgywcgB074
Cucsa.074690CmaCh16G007850Cucurbita maxima (Rimu)cgycmaB0121
Cucsa.074690CmoCh16G008470Cucurbita moschata (Rifu)cgycmoB0117
Cucsa.074690Lsi05G007110Bottle gourd (USVL1VR-Ls)cgylsiB074
Cucsa.074690Cp4.1LG14g00390Cucurbita pepo (Zucchini)cgycpeB0118
Cucsa.074690MELO3C016522.2Melon (DHL92) v3.6.1cgymedB075
Cucsa.074690CsaV3_3G006200Cucumber (Chinese Long) v3cgycucB074
Cucsa.074690Cla97C10G190720Watermelon (97103) v2cgywmbB070
Cucsa.074690Bhi11G000615Wax gourdcgywgoB082
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.074690Silver-seed gourdcarcgyB0545
Cucsa.074690Silver-seed gourdcarcgyB0740
Cucsa.074690Cucumber (Chinese Long) v3cgycucB073
Cucsa.074690Watermelon (97103) v2cgywmbB071
Cucsa.074690Wax gourdcgywgoB080
Cucsa.074690Wax gourdcgywgoB081
Cucsa.074690Cucumber (Gy14) v1cgycgyB023
Cucsa.074690Cucurbita maxima (Rimu)cgycmaB0122
Cucsa.074690Cucurbita moschata (Rifu)cgycmoB0118
Cucsa.074690Wild cucumber (PI 183967)cgycpiB071
Cucsa.074690Wild cucumber (PI 183967)cgycpiB072
Cucsa.074690Cucumber (Chinese Long) v2cgycuB070
Cucsa.074690Watermelon (Charleston Gray)cgywcgB075
Cucsa.074690Watermelon (97103) v1cgywmB076
Cucsa.074690Cucurbita pepo (Zucchini)cgycpeB0119