Cucsa.074650 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.074650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L21
Location	scaffold00785 : 535065 .. 535702 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGGACATACAAAATTGGTGATTATGTTGATATCAAGGTGAACGACGCCGTCCACAAGGGTATGCCTCATAAATTTTACCACGGTCGCACAGGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCGTCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGTTCTAGTTTTTAGAATGTACATAAGGTGATTTAGGGTAATGGATTGTGTTTGATTTTCATAGAATCTTAATTAGTTTTTGGACTATGTTTTTCTTATTAAACTTTGTTAGTTTGATGGGTTTTGGAATCTGATGAGAGAAAGTTCCATTATGATTTGCACTCTATTTTTCTTATTAAACTTGTGATGTTGAGAATGAATTTTGCAGGTCGGGAACAAAATGATTAAGAAGAGAATTCATGTTGGAGTCGAGCACGTGTAGCCTTCTCGATGAACTGAGGAATTTTGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCCCTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTATATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG

mRNA sequence

TGAGGACATACAAAATTGGTGATTATGTTGATATCAAGGTGAACGACGCCGTCCACAAGGGTATGCCTCATAAATTTTACCACGGTCGCACAGGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCGTCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGAATTTTGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCCCTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTATATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG

Coding sequence (CDS)

TGAGGACATACAAAATTGGTGATTATGTTGATATCAAGGTGAACGACGCCGTCCACAAGGGTATGCCTCATAAATTTTACCACGGTCGCACAGGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCGTCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGAATTTTGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCCCTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTATATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG

Protein sequence

RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLRYEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLYDVVNDFKGGY*

Homology

[Close]

BLAST of Cucsa.074650 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-42
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RT+K+GDYVD+KVN A+HKGMPHKFYHGRTGR+WNVTK A+ VE+NKQI +  +R     
Sbjct: 32  RTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK +NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T 
Sbjct: 92  RVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 3.9e-41
Identity = 85/134 (63.43%), Postives = 97/134 (72.39%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RT+K+GDYVD+KVN A+HKGMPHKFYHGRTGR+WNVTK A+ VE+NKQI +  +R     
Sbjct: 32  RTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK KND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T 
Sbjct: 92  RVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-18
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLRYEFCL 60
           RT+++GDYVDIK    VHKGMPHKFYHGRTGRVWNVT  A+ V INK++    +  +  +
Sbjct: 32  RTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHV 91

Query: 61  R----KVKNDVPKD------------EAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 108
           R    K  N +               EAK  G+ +  +R P  PK GF V     E + +
Sbjct: 92  RTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEV 151

[Close]

BLAST of Cucsa.074650 vs. Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2101 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFL------ 60
           +TYK+GD VDIKVN AV KGMPHK+YHG+TG V+NVT+ ++ V I K + + ++      
Sbjct: 32  KTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNV 91

Query: 61  ----------RYEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 110
                     R +F  R   N+  + EAKA+G+ +  +RQP  P     V     E +TL
Sbjct: 92  RIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTL 151

[Close]

BLAST of Cucsa.074650 vs. Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl2102 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFL------ 60
           +TYK+GD VDIKVN AV KGMPHK+YHG+TG V+NVT+ ++ V I K + + ++      
Sbjct: 32  KTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNV 91

Query: 61  ----------RYEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 110
                     R +F  R   N+  + EAKA+G+ +  +RQP  P     V     E +TL
Sbjct: 92  RIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTL 151

[Close]

BLAST of Cucsa.074650 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-44
Identity = 98/134 (73.13%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQ------------ 60
           RTYKIGDYVDIKVN AVHKGMPHKFYHGRTG+VWNVTK AI VEINKQ            
Sbjct: 32  RTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHV 91

Query: 61  ----IQDSFLRYEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
               +Q S    EF LRKVKND  K EAKAKG +ICTKRQPEGPKPGFMVEGALMET+T 
Sbjct: 92  RVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 93/134 (69.40%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RTYKIGDYVD+KVN AVHKGMPHKFYHGRTGRVWNVTK AI VE+NKQ+ +  +R     
Sbjct: 32  RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK+KND  K EAKAKGE+I TKRQPEGPKPGFMVEGA++ET+T 
Sbjct: 92  RVEHVQPSRCTEEFKLRKIKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGAMLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 93/134 (69.40%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RTYKIGDYVD+KVN AVHKGMPHKFYHGRTGRVWNVTK AI VE+NKQ+ +  +R     
Sbjct: 32  RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK+KND  K EAKAKGE+I TKRQPEGPKPGFMVEGA++ET+T 
Sbjct: 92  RVEHVQPSRCTEEFKLRKIKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGAMLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TrEMBL
Match: A0A0D2SXW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144200 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-43
Identity = 92/134 (68.66%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RTYKIGDYVD+KVN AVHKGMPHKFYHGRTGRVWN+TK AI VE+NKQ+ +  +R     
Sbjct: 32  RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNITKRAIGVEVNKQVGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK+KND  K EAKAKGE+I TKRQPEGPKPGFMVEGA++ET+T 
Sbjct: 92  RVEHVQPSRCTEEFKLRKIKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGAMLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TrEMBL
Match: A0A061EXP3_THECC (60S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_024987 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-43
Identity = 95/134 (70.90%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RTYKIGDYVDIKVN AVHKGMPHKFYHGRTGRVWNVTK AI VE+NKQ+ +  +R     
Sbjct: 32  RTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRKVKND  K EAKAKGE+I TKRQPEGPKPGFMVEGA +ET+T 
Sbjct: 92  RVEHVQPSRCTEEFKLRKVKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGATLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-43
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RT+K+GDYVD+KVN A+HKGMPHKFYHGRTGR+WNVTK A+ VE+NKQI +  +R     
Sbjct: 32  RTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK +NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T 
Sbjct: 92  RVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-43
Identity = 85/134 (63.43%), Postives = 100/134 (74.63%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RT+K+GDYVD+KVN A+HKGMPHKFYHGRTGR+WNVTK A+ VE+NKQI +  +R     
Sbjct: 32  RTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK +NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T 
Sbjct: 92  RVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-42
Identity = 85/134 (63.43%), Postives = 97/134 (72.39%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RT+K+GDYVD+KVN A+HKGMPHKFYHGRTGR+WNVTK A+ VE+NKQI +  +R     
Sbjct: 32  RTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK KND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T 
Sbjct: 92  RVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-42
Identity = 85/134 (63.43%), Postives = 97/134 (72.39%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RT+K+GDYVD+KVN A+HKGMPHKFYHGRTGR+WNVTK A+ VE+NKQI +  +R     
Sbjct: 32  RTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK KND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T 
Sbjct: 92  RVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. NCBI nr
Match: gi|778688395|ref|XP_011652742.1| (PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L21-2-like [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-59
Identity = 118/142 (83.10%), Postives = 118/142 (83.10%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLRY---- 60
           RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLRY    
Sbjct: 27  RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLRYVGNK 86

Query: 61  --------------------EFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEG 119
                               EFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEG
Sbjct: 87  MIKKRIHVGVEHVXPSRXTEEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEG 146

[Close]

BLAST of Cucsa.074650 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 1.7e-44
Identity = 99/134 (73.88%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQ------------ 60
           RTYKIGDYVDIKVN AVHKGMPHKFYHGRTGRVWNVTK AI VEINKQ            
Sbjct: 32  RTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHV 91

Query: 61  ----IQDSFLRYEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
               +Q S    EF LRKVKND  K EAKAKG +ICTKRQPEGPKPGFMVEGALMET+T 
Sbjct: 92  RVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTP 151

[Close]

BLAST of Cucsa.074650 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.7e-44
Identity = 98/134 (73.13%), Postives = 102/134 (76.12%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQ------------ 60
           RTYKIGDYVDIKVN AVHKGMPHKFYHGRTG+VWNVTK AI VEINKQ            
Sbjct: 32  RTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGQVWNVTKRAIGVEINKQVGNRIIKKRIHV 91

Query: 61  ----IQDSFLRYEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
               +Q S    EF LRKVKND  K EAKAKG +ICTKRQPEGPKPGFMVEGALMET+T 
Sbjct: 92  RVEHVQPSRCTEEFRLRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTP 151

[Close]

BLAST of Cucsa.074650 vs. NCBI nr
Match: gi|414447252|gb|AFW99820.1| (60S ribosomal protein L21 [Gossypium hirsutum])

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 93/134 (69.40%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           RTYKIGDYVD+KVN AVHKGMPHKFYHGRTGRVWNVTK AI VE+NKQ+ +  +R     
Sbjct: 32  RTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EF LRK+KND  K EAKAKGE+I TKRQPEGPKPGFMVEGA++ET+T 
Sbjct: 92  RVEHVQPSRCTEEFKLRKIKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGAMLETVTP 151

[Close]

BLAST of Cucsa.074650 vs. NCBI nr
Match: gi|645271704|ref|XP_008241042.1| (PREDICTED: 60S ribosomal protein L21-1-like [Prunus mume])

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 92/134 (68.66%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 1   RTYKIGDYVDIKVNDAVHKGMPHKFYHGRTGRVWNVTKCAISVEINKQIQDSFLR----- 60
           +TY+IGDYVD+KVN AVHKGMPHKFYHGRTGRVWNVTK AI VEINKQ+ +  +R     
Sbjct: 32  KTYRIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIRKRIHV 91

Query: 61  -----------YEFCLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL 119
                       EFCLRK+KND  K EAKAKGE+I TKRQP+GPKPGF VEGA+MET+T 
Sbjct: 92  RVEHVQPSRCTEEFCLRKIKNDQLKAEAKAKGEVISTKRQPKGPKPGFRVEGAVMETVTP 151

The following BLAST results are available for this feature:

BLAST of Cucsa.074650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL212_ARATH	5.9e-42	63.43	60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1	[more]
RL211_ARATH	3.9e-41	63.43	60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2	[more]
RL21_DICDI	4.6e-18	41.46	60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1	[more]
RL21A_SCHPO	1.0e-17	40.48	60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]
RL21B_SCHPO	1.0e-17	40.48	60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of Cucsa.074650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0_CUCSA	2.6e-44	73.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1	[more]
A0A0U1WT33_GOSHI	1.3e-43	69.40	60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0B0MJE8_GOSAR	1.3e-43	69.40	60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1	[more]
A0A0D2SXW0_GOSRA	1.7e-43	68.66	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G144200 PE=4 SV=1	[more]
A0A061EXP3_THECC	1.7e-43	70.90	60S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_024987 PE=4 SV=1	[more]

BLAST of Cucsa.074650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G57660.1	3.3e-43	63.43	Translation protein SH3-like family protein	[more]
AT1G57860.1	3.3e-43	63.43	Translation protein SH3-like family protein	[more]
AT1G09590.1	2.2e-42	63.43	Translation protein SH3-like family protein	[more]
AT1G09690.1	2.2e-42	63.43	Translation protein SH3-like family protein	[more]

BLAST of Cucsa.074650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688395\|ref\|XP_011652742.1\|	1.8e-59	83.10	PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L21-2-like [Cucumis sativu...	[more]
gi\|659084684\|ref\|XP_008443016.1\|	1.7e-44	73.88	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]	[more]
gi\|778684693\|ref\|XP_004140433.2\|	3.7e-44	73.13	PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]	[more]
gi\|414447252\|gb\|AFW99820.1\|	1.8e-43	69.40	60S ribosomal protein L21 [Gossypium hirsutum]	[more]
gi\|645271704\|ref\|XP_008241042.1\|	2.4e-43	68.66	PREDICTED: 60S ribosomal protein L21-1-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001147	Ribosomal_L21e
IPR008991	Translation_prot_SH3-like_sf
IPR018259	Ribosomal_L21e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.074650.1	Cucsa.074650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	GENE3D	G3DSA:2.30.30.70		coord: 1..50 score: 2.9
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..112 score: 2.5
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..59 score: 3.8
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 2..50 score: 8.72
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 6..31 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.074650	CSPI03G06060	Wild cucumber (PI 183967)	cgycpiB072

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.074650	Cucurbita pepo (Zucchini)	cgycpeB0118
Cucsa.074650	Cucurbita pepo (Zucchini)	cgycpeB0119
Cucsa.074650	Bottle gourd (USVL1VR-Ls)	cgylsiB074
Cucsa.074650	Melon (DHL92) v3.6.1	cgymedB075
Cucsa.074650	Silver-seed gourd	carcgyB0545
Cucsa.074650	Silver-seed gourd	carcgyB0740
Cucsa.074650	Cucumber (Chinese Long) v3	cgycucB073
Cucsa.074650	Cucumber (Chinese Long) v3	cgycucB074
Cucsa.074650	Watermelon (97103) v2	cgywmbB070
Cucsa.074650	Watermelon (97103) v2	cgywmbB071
Cucsa.074650	Wax gourd	cgywgoB080
Cucsa.074650	Wax gourd	cgywgoB081
Cucsa.074650	Wax gourd	cgywgoB082
Cucsa.074650	Cucumber (Gy14) v1	cgycgyB023
Cucsa.074650	Cucurbita maxima (Rimu)	cgycmaB0121
Cucsa.074650	Cucurbita maxima (Rimu)	cgycmaB0122
Cucsa.074650	Cucurbita moschata (Rifu)	cgycmoB0117
Cucsa.074650	Cucurbita moschata (Rifu)	cgycmoB0118
Cucsa.074650	Wild cucumber (PI 183967)	cgycpiB071
Cucsa.074650	Cucumber (Chinese Long) v2	cgycuB070
Cucsa.074650	Cucumber (Chinese Long) v2	cgycuB071
Cucsa.074650	Melon (DHL92) v3.5.1	cgymeB076
Cucsa.074650	Watermelon (Charleston Gray)	cgywcgB074
Cucsa.074650	Watermelon (Charleston Gray)	cgywcgB075
Cucsa.074650	Watermelon (97103) v1	cgywmB076
Cucsa.074650	Watermelon (97103) v1	cgywmB077