Cucsa.074330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.074330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	50S ribosomal protein L24
Location	scaffold00785 : 211467 .. 215068 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCCAAGTACACAACTTCTTTCTATCCGTCTTCGCTATTTTGCAGTTTGCAATTGCTTATCCATTTGTTCTCAGTTCGCGGAGCCAAGCCTACAGCACCAAAAATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCGCTCTATCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCGCCGCCCACAATTTATGCTGCCCCCGTAAGATTTTCTACTCTTCCCTTCCTTCCTAATTGCTTCCTTATTGTGCTTCATTTTACCTTGTTTTATATACTATCTGTAACCATCCCTATTCAAATGAAAGTACATTTCCTCATCACTTCCAAGAAGTAATTGGATCATGTTTCAGGAACTAATATGCAAGAATAAATCAAATTTAAGAATTTCGTCAAATTTTACTCAAACCACATTTCCCTCCAAACCTTTGAAATTGTTAACTACTTCCCATCCCATAGTTGCTTTAGGTTCCAAGCTAACGAAAATTGCGTTACTTGCTGTTCATATTTGAGCTTATTTTGTGTTCCATCTTGTTGAAGTAATTTTCAGGATAGTTTGTATCTAAGTATCTCTTGTTTAACTTGCAGATAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAAGGTTAGTATTCTTTCCTTTTAACGATTTCGTTCTTTTTCAACTCATTTAAATTTAATGGAGATAATGTACGTTCTATCTTGAGTATATTTGGTGGAAAATAAATGATGACGTGAAACAGCAAGTTGGATTGTTGACTTGCTGAGAAAAATGATATACCTGCTGCTACATTGTGATATGATAATGTATTGTGGTCAAAGTAAGCTTAGGCGTACACTAATTGACATAACCTTTCATTCTGTAAGTGGAAGGTTCGATACTCTATCCCCACAATTGTTGTACTAAAAGAAAAAGATAATGTATTGTGATTGAATCATTTTAGAATGTCTCTTTCATTAAGCAATCTTCCTTCTAAGAGGCTAATTTATAAGATTTTCATTGTAGCTATTTGATGAAGTACTATCAAATGCTTCTTGGACAGTGCTTCTAAATTATAGCCAAGCATACAACTTAGGAACTCAAGGACACAGTTATACAACCTATACCTATAGAATAGATCCTGTTCAAGTGAGATCTTCACCTTTGATATGGAAGTTTTGTTCACCATTAAAAACCTCCTTTCACAGTTAAAAGCAGCCCCAAGCATTCTTATACACCCAACTATCAATTATATGTTTTACAATTATATTAGGGAAATTGCAATTTAAGAATAAGATATTTAAAGTGTGTCACATGTTTTCTATTTTGCAACTATGACACTTTTTAGTGTATGAAGTGTATGGAGTATATATTAATAGTGGATCAAGTGTATTTCAGTAGTTACTAGAGTGTTGTGTCCGTACTTTTTTGAAATTTCACAGGCTGAGCTTGTTTTTTACTGTTTTGCAGAAGTAATTAGTTTGGGCTATGCATCTAATTGTTAAAACTTATTCTGCCAAATTTCCAAGAAGACCTTTATATTATAATTGTTCGTAAGGCTTCTTTCCTGGAATGGTCGTTGAACTCTCCCTTCTAAATGAACTCAACCACAAAAGTAAACGTTTATAGTGATATGTTTGATGTTTCTGTTCTTGCATTTCTTCTATTTGGCATGATATCAAAATTGTGAAGAAATAATTGGTAATTCTACGACTGTTTCCCCCATATTTACTTCTTAAATTTATTTTCTTATTGGCAGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTAGTACACAAAATGCATGTTAAGATTGGAGACACAGTGAAAGTTATAGCTGGTCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATCTTTAAACATAATAGCAAAGTGGTAGTCAACGAAATAAATCTGAAGACAAAGCATGTGAAGAGCAGAGAGGAGGAAGAACAAGGACAGATTATTAAGGTTTGTTTCTGCTCTTTGTAACAAATTCAAATCATCAACTATTGTCTATACAAAATGAAACTTTATCATCAACCAGCAAACTCCTACACTCTCAAGAAAATGAAATTCATCTGGGTGCGTCAAAAAGTGACCAATACTTTAGTGTTAACTGGATTCTGTATTTGATTAGTTCTTCACCCCATAGTCCAATTTCTTTTTGTCAACTTTCATCACTTGGTTTGGATATTTCAGATCGAAGCACCCATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAGCAGGATGTAGTGAGCCGGGTTGGTCACAAAGTTCTTGAAGATGGAAAACGAGTACGTTACCTCATAAAAACTGGGGAAATAATTGACAGCACTGAAAATTGGAAAAAaTTGAAGGAAGCGAATAGCAAAACTGAAGTGGCTACAACTGCCTGAGAATCGTTTTTCAATTGTACCTACCACTGATGTAGTTATGTTGAAGGGTATTTCAATATCCCATTATCTTTTTTCAGCAAATATTTTTGTTGCGGTCTTTTTGTTCATTGATGCATAGTAAAGTAATATCGCTTTGGTAGTTTCTTGTTTATTAATAATCTATAACATATTGAGACGTATATATATATAATATATCTATATCCTCAATTATTTTTAATCGGTTCATC

mRNA sequence

AGCCCAAGTACACAACTTCTTTCTATCCGTCTTCGCTATTTTGCAGTTTGCAATTGCTTATCCATTTGTTCTCAGTTCGCGGAGCCAAGCCTACAGCACCAAAAATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCGCTCTATCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCGCCGCCCACAATTTATGCTGCCCCCATAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAAGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTAGTACACAAAATGCATGTTAAGATTGGAGACACAGTGAAAGTTATAGCTGGTCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATCTTTAAACATAATAGCAAAGTGGTAGTCAACGAAATAAATCTGAAGACAAAGCATGTGAAGAGCAGAGAGGAGGAAGAACAAGGACAGATTATTAAGATCGAAGCACCCATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAGCAGGATGTAGTGAGCCGGGTTGGTCACAAAGTTCTTGAAGATGGAAAACGAGTACGTTACCTCATAAAAACTGGGGAAATAATTGACAGCACTGAAAATTGGAAAAAATTGAAGGAAGCGAATAGCAAAACTGAAGTGGCTACAACTGCCTGAGAATCGTTTTTCAATTGTACCTACCACTGATGTAGTTATGTTGAAGGGTATTTCAATATCCCATTATCTTTTTTCAGCAAATATTTTTGTTGCGGTCTTTTTGTTCATTGATGCATAGTAAAGTAATATCGCTTTGGTAGTTTCTTGTTTATTAATAATCTATAACATATTGAGACGTATATATATATAATATATCTATATCCTCAATTATTTTTAATCGGTTCATC

Coding sequence (CDS)

ATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCGCTCTATCCCTCTCTTCCAATTCCTTCCTCGGCCAACGCCTTCCGCCGCCCACAATTTATGCTGCCCCCATAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAAGCTTAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCAGTAGTACACAAAATGCATGTTAAGATTGGAGACACAGTGAAAGTTATAGCTGGTCGTGATAAGGGAAAAATTGGAGAAATCACCAAAATCTTTAAACATAATAGCAAAGTGGTAGTCAACGAAATAAATCTGAAGACAAAGCATGTGAAGAGCAGAGAGGAGGAAGAACAAGGACAGATTATTAAGATCGAAGCACCCATCCACAGCTCCAATGTGATGCTTTACTCAAAAGAGCAGGATGTAGTGAGCCGGGTTGGTCACAAAGTTCTTGAAGATGGAAAACGAGTACGTTACCTCATAAAAACTGGGGAAATAATTGACAGCACTGAAAATTGGAAAAAaTTGAAGGAAGCGAATAGCAAAACTGAAGTGGCTACAACTGCCTGA

Protein sequence

MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPNSLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQGQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKEANSKTEVATTA*

Homology

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BLAST of Cucsa.074330 vs. Swiss-Prot
Match: RK24_PEA (50S ribosomal protein L24, chloroplastic OS=Pisum sativum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.2e-77
Identity = 150/192 (78.12%), Postives = 167/192 (86.98%), Query Frame = 1


Query: 3   AMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITS---KEKPCLIVMKLKRWERKECKP 62
           AMA+LQSSM++LSLSSNSFLGQ L P T+  +P       EK CLIVMKLKRWERKECKP
Sbjct: 5   AMASLQSSMSSLSLSSNSFLGQPLSPITL--SPFLQGKPTEKKCLIVMKLKRWERKECKP 64

Query: 63  NSLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEE 122
           NSLPV+HK+HVK+GDTVKVI+G +KG+IGEITKIFKHNS V+V +INLKTKHVKS +E E
Sbjct: 65  NSLPVLHKLHVKVGDTVKVISGHEKGQIGEITKIFKHNSSVIVKDINLKTKHVKSNQEGE 124

Query: 123 QGQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLK 182
            GQI K+EAPIHSSNVMLYSKE+DV SRVGHKVLE+GKRVRYLIKTGEIIDS ENWKKLK
Sbjct: 125 PGQINKVEAPIHSSNVMLYSKEKDVTSRVGHKVLENGKRVRYLIKTGEIIDSEENWKKLK 184

Query: 183 EANSKT-EVATT 191
           EAN KT EVA T
Sbjct: 185 EANKKTAEVAAT 194

[Close]

BLAST of Cucsa.074330 vs. Swiss-Prot
Match: RK24_ARATH (50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana GN=RPL24 PE=2 SV=2)

HSP 1 Score: 282.3 bits (721), Expect = 3.9e-75
Identity = 142/196 (72.45%), Postives = 167/196 (85.20%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLS-SNSFLGQRLPPPTIYA--APITSKEKPCLIVMKLKRWERKEC 60
           MA M+ALQSS T+LSLS S+SFLGQRL  P   +  +P+   E PCL++ KLKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREE 120
           KPNSLP++HKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +V+ ++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 121 EEQGQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKK 180
            E GQI+KIEAPIHSSNVMLYSKE+DVVSRVGHKVLEDG++VRYLIKTGE+ID+ E WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 181 LKEANSK--TEVATTA 192
           LKEA  K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

[Close]

BLAST of Cucsa.074330 vs. Swiss-Prot
Match: RK24_TOBAC (50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.4e-71
Identity = 135/188 (71.81%), Postives = 149/188 (79.26%), Query Frame = 1


Query: 4   MAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPNSLP 63
           MAALQSS   LS    SF GQR  PP      + S E PCLI  KLKRWERKECKPNSLP
Sbjct: 1   MAALQSSFAGLS---TSFFGQRFSPPLSLPPLVKSTEGPCLIQAKLKRWERKECKPNSLP 60

Query: 64  VVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQGQI 123
           V+HKMHVK+GDTVK+I+G DKGK+GEIT+I KHNSKVVV ++NLKTKHVKSR E+E GQI
Sbjct: 61  VLHKMHVKLGDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQI 120

Query: 124 IKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKEANS 183
           +KIEAPIHSSNVMLYSKEQ V SRVGHK L++GKRVRYLIKTGEIIDS ENWKK  +   
Sbjct: 121 VKIEAPIHSSNVMLYSKEQKVASRVGHKTLDNGKRVRYLIKTGEIIDSAENWKKAVKEKE 180

Query: 184 KTEVATTA 192
           KT  A  A
Sbjct: 181 KTTEAVAA 185

[Close]

BLAST of Cucsa.074330 vs. Swiss-Prot
Match: RK24_SPIOL (50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea GN=RPL24 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.3e-66
Identity = 128/192 (66.67%), Postives = 154/192 (80.21%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAM  LQSS T+LSLSSNSFLGQRL P        T    PCLIVM++KRWERK+CKPN
Sbjct: 1   MAAMV-LQSSFTSLSLSSNSFLGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLP +HK HVK+GDTVKVI+G +KGKIGEI+KI KHNS V++ ++N KTKHVKS+EE EQ
Sbjct: 61  SLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLK- 180
           GQIIKIEA IHSSNVML  KEQ+V  RVGHK+LED ++VRYLIKTGEI+D+ + WK+++ 
Sbjct: 121 GQIIKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRKVRYLIKTGEIVDTPDRWKEIQN 180

Query: 181 EANSKTEVATTA 192
           +  S+T VA  A
Sbjct: 181 KKESETAVAVAA 191

[Close]

BLAST of Cucsa.074330 vs. Swiss-Prot
Match: RL24_SYNP2 (50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplX PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-33
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 58  KPNSLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREE 117
           + +S P  HKMHVK GDTV+VI+GRDKGK+GE+ K    +SKVVV ++N++TKHVK ++E
Sbjct: 4   RKSSTPTRHKMHVKTGDTVQVISGRDKGKVGEVIKTLPKSSKVVVKDVNIRTKHVKPQQE 63

Query: 118 EEQGQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIID 171
            E GQI   EAPIHSSNVM YS+++ V SR+G+++ EDG++VR L KTGE+ID
Sbjct: 64  GESGQIQTFEAPIHSSNVMHYSEKEKVASRIGYQLTEDGRKVRVLKKTGEVID 116

[Close]

BLAST of Cucsa.074330 vs. TrEMBL
Match: A0A0A0L6H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G098540 PE=3 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 8.3e-101
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 ANSKTEVATTA 192
           ANSK EVATTA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of Cucsa.074330 vs. TrEMBL
Match: M5X0F5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011879mg PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.2e-80
Identity = 149/191 (78.01%), Postives = 169/191 (88.48%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQ+SMT+LSLSSNSFLGQRL PPT+Y  P     KPCLIV+KLKRWERKECKPN
Sbjct: 1   MAAMAALQTSMTSLSLSSNSFLGQRLLPPTLYPVPANLTAKPCLIVVKLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK+GDTVKVI+G +KGK GEITKI+KHNS V+V +INLKTKH+KSREE E 
Sbjct: 61  SLPVLHKMHVKVGDTVKVISGHEKGKTGEITKIYKHNSTVIVKDINLKTKHMKSREEGEP 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIK+E  IHSSNVMLYSKE+DV SRVGHK+LE+G+RVRYLIKTGEI+D+ ENWKKLKE
Sbjct: 121 GQIIKVEGAIHSSNVMLYSKEKDVASRVGHKILENGQRVRYLIKTGEIVDNVENWKKLKE 180

Query: 181 ANSKTEVATTA 192
              KTEVA T+
Sbjct: 181 EKRKTEVAATS 191

[Close]

BLAST of Cucsa.074330 vs. TrEMBL
Match: V4UH05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009584mg PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.6e-80
Identity = 155/193 (80.31%), Postives = 170/193 (88.08%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMT+LS+SSNSF GQRL  P++    +   +KPCLIV++LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK GDTVKVIAG DKGKIGEITK+F+HNS V+V +INLKTKHVK REEEEQ
Sbjct: 61  SLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKE +V SRVGHKVL+DG RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKE 180

Query: 181 AN--SKTEVATTA 192
           AN   KTEVAT A
Sbjct: 181 ANRQEKTEVATAA 193

[Close]

BLAST of Cucsa.074330 vs. TrEMBL
Match: A0A067DJW5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029417mg PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.6e-80
Identity = 155/193 (80.31%), Postives = 170/193 (88.08%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMT+LS+SSNSF GQRL  P++    +   +KPCLIV++LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSISSNSFFGQRLSFPSLSPITVKPTDKPCLIVVRLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK GDTVKVIAG DKGKIGEITK+F+HNS V+V +INLKTKHVK REEEEQ
Sbjct: 61  SLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVKKREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKE +V SRVGHKVL+DG RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSAENWKKLKE 180

Query: 181 AN--SKTEVATTA 192
           AN   KTEVAT A
Sbjct: 181 ANRQEKTEVATAA 193

[Close]

BLAST of Cucsa.074330 vs. TrEMBL
Match: A0A0D2M8A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G080800 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.2e-80
Identity = 154/193 (79.79%), Postives = 173/193 (89.64%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLP-PPTIYAAPITSKEKPCLIVMKLKRWERKECKP 60
           MAAMAALQSSMTALSLSSNSFLGQRL  PP++    I  +E PCLIV+KLKRWERKECKP
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLSIPPSLSPLHIKPRENPCLIVVKLKRWERKECKP 60

Query: 61  NSLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEE 120
           NSLPV+HKMHVK+GDT+KVI+GRDKGKIGEI+KIFKHNS +VV +INLKTKH+KSR E++
Sbjct: 61  NSLPVLHKMHVKVGDTIKVISGRDKGKIGEISKIFKHNSTIVVKDINLKTKHMKSRGEDQ 120

Query: 121 QGQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLK 180
            GQIIKIEAPIHSSNVMLYSKE++V SRVGHKVL+DGK+VRYLIKTGEI+DS ENWKKLK
Sbjct: 121 PGQIIKIEAPIHSSNVMLYSKEKEVTSRVGHKVLDDGKKVRYLIKTGEILDSDENWKKLK 180

Query: 181 E-ANSKTEVATTA 192
           E A  KTEVA  A
Sbjct: 181 EAAKEKTEVAAAA 193

[Close]

BLAST of Cucsa.074330 vs. TAIR10
Match: AT5G54600.1 (AT5G54600.1 Translation protein SH3-like family protein)

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-76
Identity = 142/196 (72.45%), Postives = 167/196 (85.20%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLS-SNSFLGQRLPPPTIYA--APITSKEKPCLIVMKLKRWERKEC 60
           MA M+ALQSS T+LSLS S+SFLGQRL  P   +  +P+   E PCL++ KLKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREE 120
           KPNSLP++HKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +V+ ++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 121 EEQGQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKK 180
            E GQI+KIEAPIHSSNVMLYSKE+DVVSRVGHKVLEDG++VRYLIKTGE+ID+ E WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 181 LKEANSK--TEVATTA 192
           LKEA  K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

[Close]

BLAST of Cucsa.074330 vs. TAIR10
Match: AT5G23535.1 (AT5G23535.1 KOW domain-containing protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 69  HVKI--GDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQGQIIKI 128
           H KI  GD V +I G+DKG+ G I ++ +  ++V+V   NL  KH+K   + E G I  +
Sbjct: 12  HWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGGPDHE-GGIFTV 71

Query: 129 EAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTG 167
           EAP+H+SNV +         +VG K LEDG +VR    TG
Sbjct: 72  EAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTG 110

[Close]

BLAST of Cucsa.074330 vs. NCBI nr
Match: gi|449463166|ref|XP_004149305.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 1.2e-100
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 ANSKTEVATTA 192
           ANSK EVATTA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of Cucsa.074330 vs. NCBI nr
Match: gi|659102802|ref|XP_008452322.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 3.2e-98
Identity = 184/191 (96.34%), Postives = 188/191 (98.43%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMTALSLSSNSFLGQRLPPP IYAAPITSKEKPCLIVMKLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK+GDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQ+V SRVGHK+LEDGKRVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 ANSKTEVATTA 192
           A SKTEVATTA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of Cucsa.074330 vs. NCBI nr
Match: gi|657954038|ref|XP_008365800.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Malus domestica])

HSP 1 Score: 307.8 bits (787), Expect = 1.4e-80
Identity = 151/191 (79.06%), Postives = 169/191 (88.48%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRL PPT+Y  P     KPCLIV+KLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLFPPTLYPVPAKLTVKPCLIVVKLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK+GDTVKVI+G +KGK GE+TKIFKHNS V+V EINLKTKH+KSREE E 
Sbjct: 61  SLPVLHKMHVKVGDTVKVISGHEKGKTGEVTKIFKHNSTVIVKEINLKTKHMKSREEGEP 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQI+K+E  IHSSNVML+SKE++V SRVGHK+LE+G+RVRYLIKTGEIIDSTENWKKLKE
Sbjct: 121 GQILKVEGAIHSSNVMLFSKEKNVASRVGHKILENGQRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 ANSKTEVATTA 192
              KTE A TA
Sbjct: 181 EKKKTEEAVTA 191

[Close]

BLAST of Cucsa.074330 vs. NCBI nr
Match: gi|694329620|ref|XP_009355565.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Pyrus x bretschneideri])

HSP 1 Score: 307.4 bits (786), Expect = 1.8e-80
Identity = 150/191 (78.53%), Postives = 169/191 (88.48%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRL PPT+Y+ P     KPCLIV+KLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLFPPTLYSVPAKLTAKPCLIVVKLKRWERKECKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK+GDTVKVI+G DKGK GE+TKIFKHNS V+V EINLKTKH+KSREE E 
Sbjct: 61  SLPVLHKMHVKVGDTVKVISGHDKGKTGEVTKIFKHNSTVIVKEINLKTKHMKSREEGEP 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQI+K+E  IHSSNVML+SKE++V SRVGHK+LE+G+RVRYLIKTGEIID+ ENWKKLKE
Sbjct: 121 GQILKVEGAIHSSNVMLFSKEKNVASRVGHKILENGQRVRYLIKTGEIIDNAENWKKLKE 180

Query: 181 ANSKTEVATTA 192
              KTE A TA
Sbjct: 181 EKKKTEEAVTA 191

[Close]

BLAST of Cucsa.074330 vs. NCBI nr
Match: gi|1009110863|ref|XP_015898006.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 307.4 bits (786), Expect = 1.8e-80
Identity = 151/191 (79.06%), Postives = 170/191 (89.01%), Query Frame = 1


Query: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRL  PT+  +P  S EKPCLIV +LKRWERK+CKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLSLPTLCPSPAKSPEKPCLIVARLKRWERKKCKPN 60

Query: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120
           SLPV+HKMHVK+GDTVK+IAG +KGKIGEITK+F+HNS V+V E+NLKTKHVKSR E+E 
Sbjct: 61  SLPVLHKMHVKVGDTVKLIAGHEKGKIGEITKVFRHNSTVIVKEVNLKTKHVKSRGEDEP 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180
           GQIIKIE PIHSSNVMLYSKE++V SRVGHKVL++GKRVRYLIKTGEIIDS ENWK+LKE
Sbjct: 121 GQIIKIEGPIHSSNVMLYSKEKEVASRVGHKVLDNGKRVRYLIKTGEIIDSAENWKELKE 180

Query: 181 ANSKTEVATTA 192
              KTE  TTA
Sbjct: 181 EKRKTEETTTA 191

The following BLAST results are available for this feature:

BLAST of Cucsa.074330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK24_PEA	3.2e-77	78.13	50S ribosomal protein L24, chloroplastic OS=Pisum sativum GN=RPL24 PE=2 SV=1	[more]
RK24_ARATH	3.9e-75	72.45	50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana GN=RPL24 PE=2 S...	[more]
RK24_TOBAC	3.4e-71	71.81	50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1	[more]
RK24_SPIOL	4.3e-66	66.67	50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea GN=RPL24 PE=1 SV=1	[more]
RL24_SYNP2	2.1e-33	59.29	50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]

BLAST of Cucsa.074330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6H1_CUCSA	8.3e-101	99.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G098540 PE=3 SV=1	[more]
M5X0F5_PRUPE	1.2e-80	78.01	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011879mg PE=3 SV=1	[more]
V4UH05_9ROSI	1.6e-80	80.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009584mg PE=3 SV=1	[more]
A0A067DJW5_CITSI	1.6e-80	80.31	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029417mg PE=3 SV=1	[more]
A0A0D2M8A6_GOSRA	6.2e-80	79.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G080800 PE=3 SV=1	[more]

BLAST of Cucsa.074330 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54600.1	2.2e-76	72.45	Translation protein SH3-like family protein	[more]
AT5G23535.1	2.6e-13	41.00	KOW domain-containing protein	[more]

BLAST of Cucsa.074330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463166\|ref\|XP_004149305.1\|	1.2e-100	99.48	PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis sativus]	[more]
gi\|659102802\|ref\|XP_008452322.1\|	3.2e-98	96.34	PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo]	[more]
gi\|657954038\|ref\|XP_008365800.1\|	1.4e-80	79.06	PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Malus domestica]	[more]
gi\|694329620\|ref\|XP_009355565.1\|	1.8e-80	78.53	PREDICTED: 50S ribosomal protein L24, chloroplastic [Pyrus x bretschneideri]	[more]
gi\|1009110863\|ref\|XP_015898006.1\|	1.8e-80	79.06	PREDICTED: 50S ribosomal protein L24, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003256	Ribosomal_L24
IPR005824	KOW
IPR005825	Ribosomal_L24/26_CS
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2
IPR003256	Ribosomal_L24
IPR005824	KOW
IPR005825	Ribosomal_L24/26_CS
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0032544	plastid translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.074330.2	Cucsa.074330.2	mRNA
Cucsa.074330.1	Cucsa.074330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 68..164 score: 18
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 105..169 score: 3.4
IPR003256	Ribosomal protein L24	TIGRFAMs	TIGR01079	TIGR01079	coord: 67..169 score: 1.2
IPR005824	KOW	PFAM	PF00467	KOW	coord: 73..102 score: 8.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 69..96 score: 9.
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 73..90 scor
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 66..168 score: 2.24
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 37..157 score: 5.1
None	No IPR available	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 1..178 score: 4.1E
None	No IPR available	PANTHER	PTHR12903:SF1	50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC	coord: 1..178 score: 4.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.074330	Csa3G098540	Cucumber (Chinese Long) v2	cgycuB071
Cucsa.074330	MELO3C016583	Melon (DHL92) v3.5.1	cgymeB076
Cucsa.074330	ClCG10G006290	Watermelon (Charleston Gray)	cgywcgB074
Cucsa.074330	CSPI03G05710	Wild cucumber (PI 183967)	cgycpiB072
Cucsa.074330	Cp4.1LG14g00040	Cucurbita pepo (Zucchini)	cgycpeB0118
Cucsa.074330	MELO3C031870.2	Melon (DHL92) v3.6.1	cgymedB075
Cucsa.074330	Cla97C10G190280	Watermelon (97103) v2	cgywmbB070
Cucsa.074330	Bhi11G000583	Wax gourd	cgywgoB083
Cucsa.074330	Carg24087	Silver-seed gourd	carcgyB0262

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.074330	Wax gourd	cgywgoB080
Cucsa.074330	Cucurbita maxima (Rimu)	cgycmaB0121
Cucsa.074330	Cucurbita maxima (Rimu)	cgycmaB0122
Cucsa.074330	Cucurbita moschata (Rifu)	cgycmoB0117
Cucsa.074330	Cucurbita moschata (Rifu)	cgycmoB0118
Cucsa.074330	Wild cucumber (PI 183967)	cgycpiB071
Cucsa.074330	Cucumber (Chinese Long) v2	cgycuB070
Cucsa.074330	Watermelon (Charleston Gray)	cgywcgB075
Cucsa.074330	Watermelon (97103) v1	cgywmB076
Cucsa.074330	Cucurbita pepo (Zucchini)	cgycpeB0119
Cucsa.074330	Bottle gourd (USVL1VR-Ls)	cgylsiB074
Cucsa.074330	Silver-seed gourd	carcgyB0740
Cucsa.074330	Cucumber (Chinese Long) v3	cgycucB074