Cucsa.067660 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.067660
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1
Locationscaffold00699 : 274809 .. 275768 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAAGAACTTTTGCCATTTTATGTCACTTACTAAGAACAAGGGCTGGTCTGACGTCGATAGAATGCATCGATGTGGAGGAGATGGTCGCGATGTTTCTACATATACTAGCGCACGATGTGAAAAATAGAGTCATTCAATGAGACTTTGTGCGGTACAGGGAGACAGTTTCTCACCATTTCAACCTATGTTGTTAGCTATGATACAACTACACGATGAGTTGCTGAAGAAACCACAGCCAGTAACAAACACTTGCACCAATCCACGATGGAGGTGCTTCGATGTTTGACTAGTCTTCTAATCCATTCTGATAAGGTATCCCGAGGTCATAGTACTTAGCTGCATTTTTTTTCAATTAAGCTGAATTGTTTCGGGGCATTGGATGAGACTTACATCAAGGTGAACGTGCCCATTTTTTATCATCCCAGGTATAGAACATGTAAGGGCGAAGTTGCCACGAACGTGCTCGACGTTTGAGGCACGAAAGGCGACTTCGTATCATGTTGGTTGGCTGGGAAGGATCGGCAGCAGATTCTTGCATACTCCGTGATGCTATATCACGACCCAACAAACTGCAAGTTCTGAAGGGTAAGTGGTGTTCGTTCTCATACTACATCAAATCTAGGGATTTACATATAGTCAAATTAAGTAATGTCGTTATCGTGACAGGGTTTTACTATCTATGCGACGCGGGGTATCCTAACGTCGAAGGATTTCTTGCTCCATACAGAGGACAAAGATACCACTTGCAAGAGTGGCAATGATCTGGTAATGCGCCAAGTAATGCGAAAGAGTACTTCAACATAAAACATTCGTCAGCACAGAATGTTATTGAGCGAGCATTTGGGTTGTTGAAGGGTCGTTGGGCAATCCTACGTGGAAAGTCGTACTATCCCGTGCAGGTTCAGTGTTGTACGATTTTGGCATGTTGCCTTCTACACAATCTCATAAATTGA

mRNA sequence

atggacaaaagaacttttgccattttatgtcacttactaagaacaagggctggtctgacgtcgatagaatgcatcgatgtggaggagatggtcgcgatgtttctacatatactagcgcacgatgtgaaaaatagaggagacagtttctcaccatttcaacctatgttgttagctatgatacaactacacgatgagttgctgaagaaaccacagccactgcattttttttcaattaagctgaattgtttcggggcattggatgagacttacatcaaggtgaacgtgcccattttttatcatcccaggcacgaaaggcgacttcgtatcatgttggttggctgggaaggatcggcagcagattcttgcatactccgtgatgctatatcacgacccaacaaactgcaagttctgaaggagtacttcaacataaaacattcgtcagcacagaatgttattgagcgagcatttgggttgttgaagggtcgttgggcaatcctacgtggaaagtcgtactatcccgtgcaggttcagtgttgtacgattttggcatgttgccttctacacaatctcataaattga

Coding sequence (CDS)

ATGGACAAAAGAACTTTTGCCATTTTATGTCACTTACTAAGAACAAGGGCTGGTCTGACGTCGATAGAATGCATCGATGTGGAGGAGATGGTCGCGATGTTTCTACATATACTAGCGCACGATGTGAAAAATAGAGGAGACAGTTTCTCACCATTTCAACCTATGTTGTTAGCTATGATACAACTACACGATGAGTTGCTGAAGAAACCACAGCCACTGCATTTTTTTTCAATTAAGCTGAATTGTTTCGGGGCATTGGATGAGACTTACATCAAGGTGAACGTGCCCATTTTTTATCATCCCAGGCACGAAAGGCGACTTCGTATCATGTTGGTTGGCTGGGAAGGATCGGCAGCAGATTCTTGCATACTCCGTGATGCTATATCACGACCCAACAAACTGCAAGTTCTGAAGGAGTACTTCAACATAAAACATTCGTCAGCACAGAATGTTATTGAGCGAGCATTTGGGTTGTTGAAGGGTCGTTGGGCAATCCTACGTGGAAAGTCGTACTATCCCGTGCAGGTTCAGTGTTGTACGATTTTGGCATGTTGCCTTCTACACAATCTCATAAATTGA

Protein sequence

MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNRGDSFSPFQPMLLAMIQLHDELLKKPQPLHFFSIKLNCFGALDETYIKVNVPIFYHPRHERRLRIMLVGWEGSAADSCILRDAISRPNKLQVLKEYFNIKHSSAQNVIERAFGLLKGRWAILRGKSYYPVQVQCCTILACCLLHNLIN*
Homology
[Close]
BLAST of Cucsa.067660 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.3e-41
Identity = 118/267 (44.19%), Postives = 141/267 (52.81%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFS- 60
           MD+RTFAILCHLLR  AGL+S E +DVEEMVAMFLH+LAHDVKNR         G++ S 
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  PFQPMLLAMIQLHDELLKKPQPL------HFFSIKLNCFGALDETYIKVNVPIFYHPRHE 120
            F  +LLA+++L++EL+K+P P+        +    NC GALD TYIKVNVP    P   
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 RR-----------------LRIMLVGWEGSAADSCILRDAISRPNKLQVLKEYFNIKHSS 180
            R                    +L GWEGSAADS ILRDAIS+ N LQV K Y+ +  + 
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAG 194

Query: 181 AQNVIERAFGLLKGR------------------------------------------WAI 193
             N  E      KG+                                          W I
Sbjct: 195 YPNA-EGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTI 254

[Close]
BLAST of Cucsa.067660 vs. TrEMBL
Match: A2ZTW0_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02038 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.2e-32
Identity = 90/224 (40.18%), Postives = 126/224 (56.25%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFS- 60
           MD+RTF ILC +LR   G+     + +EE VA FL+IL+H +KNR         G++ S 
Sbjct: 1   MDRRTFHILCDMLRDVGGIEDTRNMPLEESVASFLYILSHHLKNRTIGKFFYRSGETVSR 60

Query: 61  PFQPMLLAMIQLHDELLKKPQPL------HFFSIKLNCFGALDETYIKVNVPIFYHPRHE 120
            F   LLA+++LH  LLKKP+P+        +    NC GALD T+IKV VP     R+ 
Sbjct: 61  HFNLCLLAVLRLHQLLLKKPEPIPEDTTDDRWKYFKNCLGALDGTHIKVTVPTRIKGRYR 120

Query: 121 RRLRIMLVGWEG---------SAADSCIL--------RDAISRPNKLQVLKEYFNIKHSS 180
            R   ++    G         + AD  +             +  N  +  +EYFN++H+S
Sbjct: 121 SRKGDIVTNVLGCYYLVDAGYTNADGFLAPYRGQRYHLGRFTARNPPRSAEEYFNMRHAS 180

Query: 181 AQNVIERAFGLLKGRWAILRGKSYYPVQVQCCTILACCLLHNLI 192
           A+N++ER+FG LKGRWAILR  SY+P++ QC  I+AC LLHNLI
Sbjct: 181 ARNIVERSFGRLKGRWAILRSPSYFPIKTQCRIIMACALLHNLI 224

[Close]
BLAST of Cucsa.067660 vs. TrEMBL
Match: K4BJ65_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 93/234 (39.74%), Postives = 121/234 (51.71%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFSP 60
           MD+  F  L  L +   GLT+ + +   E +AMFL+ILAH  KNR         G S S 
Sbjct: 87  MDRNAFHNLVLLTKDVGGLTNGKYMSRSEKLAMFLNILAHHEKNRSIKVDYIRSGWSVSQ 146

Query: 61  -FQPMLLAMIQLHDELLKKPQPLHFFSIK------LNCFGALDETYIKVNVPIFYHPRHE 120
            F   L A+++L    L  P+P+    I+        C GALD TYI + VP  Y PR+ 
Sbjct: 147 AFNECLRAILKLTPLFLVNPKPILENEIEDRWKWFKGCLGALDGTYIHIRVPSVYKPRYR 206

Query: 121 RR-----------------LRIMLVGWEGSAADSCILRDAISRPNKLQV----------L 180
            R                    +L GWEG AAD  +LRDA+ R N L++           
Sbjct: 207 TRKGDIATNVLGVCDRNLNFTYVLPGWEGLAADGRVLRDAVVRCNGLKIPEGDNPSPRCR 266

Query: 181 KEYFNIKHSSAQNVIERAFGLLKGRWAILRGKSYYPVQVQCCTILACCLLHNLI 192
           +E FN+KH+ A++VIERAFGLLKGRW ILR   +Y V+V    I ACCL+HN I
Sbjct: 267 EELFNMKHARARDVIERAFGLLKGRWGILRSSLWYSVKVHNRIISACCLIHNYI 320

[Close]
BLAST of Cucsa.067660 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.5e-29
Identity = 98/264 (37.12%), Postives = 127/264 (48.11%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFS- 60
           MD+ TF  LC +LRT   L   + IDVEEMVA+FLHILAH VKNR         G++ S 
Sbjct: 74  MDRHTFTTLCSMLRTIGKLKDSKYIDVEEMVALFLHILAHHVKNRVIKFRFLRSGETISR 133

Query: 61  PFQPMLLAMIQLHDELLKKPQPLHFFSIK------LNCFGALDETYIKVNVPIFYHPRHE 120
            F  +L A+I+L   LLKKP+P+   S         NC GALD TYIKVNV     PR+ 
Sbjct: 134 HFNAVLNAVIRLQGVLLKKPEPVSENSTDERWKWFKNCLGALDGTYIKVNVREGDKPRYR 193

Query: 121 RRLR-----------------IMLVGWEGSAADSCILRDAISRPNKLQVLKEYF---NIK 180
            R                    +L GWEGS +DS +LRDA+SR N L V   Y+   ++ 
Sbjct: 194 TRKNEIATNVLGVCSQDMQFIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPHGYYYLVDVG 253

Query: 181 HSSAQNVI----------------------ERAFGLLKGR---------------WAILR 192
           +++ +  +                      E  F +                   WAILR
Sbjct: 254 YTNGKGFLAPYRGQRYHLNDWREGHMPTTHEEFFNMKHSAARNVIERCFGLLKLRWAILR 313

[Close]
BLAST of Cucsa.067660 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 88/194 (45.36%), Postives = 111/194 (57.22%), Query Frame = 1 

Query: 15  TRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFS-PFQPMLLAMIQLHD 74
           T AGLTS E +DVEEMVAMFLHILAHDVK+R         G++ S  F  +LLA+I+LH+
Sbjct: 57  TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHE 116

Query: 75  ELLKKPQPL---------HFFSIKLNCFGALDETYIKVNVPIFYHPRHERR--------- 134
           ELLKKPQP+          +F    NC GALD TYIKVNVP     R+  R         
Sbjct: 117 ELLKKPQPVPNECTDQRWRWFE---NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVL 176

Query: 135 --------LRIMLVGWEGSAADSCILRDAISRPNKLQVLKEYFNIKHSSAQNVIERAFGL 173
                      +L GWEGSAADS ILRDA+SRPN+L+V K Y+ +        ++  +  
Sbjct: 177 GVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYL--------VDVGYPN 236

[Close]
BLAST of Cucsa.067660 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-15
Identity = 71/259 (27.41%), Postives = 107/259 (41.31%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFSP 60
           MDK  F  LC LL+TR  L     I +E  +A+FL I+ H+++ R         G++ S 
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  -FQPMLLAMIQL---------HDELLKKPQPLHFFSIKLNCFGALDETYIKVNVPI---- 120
            F  +L A+I +         + + L+   P  +F    +C G +D  +I V V +    
Sbjct: 108 HFNNVLNAVIAISKDFFQPNSNSDTLENDDP--YFK---DCVGVVDSFHIPVMVGVDEQG 167

Query: 121 -------------FYHPRHERRLRIMLVGWEGSAADSCILRDAISRPNKLQV-------- 180
                              + R   +L GWEGSA+D  +L  A++R NKLQV        
Sbjct: 168 PFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIV 227

Query: 181 ----------LKEYFNIKHSSAQ--------------NVIERAFGLLKGRWAILRGKSYY 192
                     +  Y  +  +S +                I R FG LK R+ IL     Y
Sbjct: 228 DNKYPNLPGFIAPYHGVSTNSREEAKEMFNERHKLLHRAIHRTFGALKERFPILLSAPPY 287

[Close]
BLAST of Cucsa.067660 vs. TAIR10
Match: AT5G35695.1 (AT5G35695.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-06
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 1 

Query: 139 EYFNIKHSSAQNVIERAFGLLKGRWAILRGKSYYPVQVQCCTILACCLLHNLI 192
           E FN++H S +NVIER FG+ K R+AI +    +  + Q   +L C  LHN +
Sbjct: 88  ELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQAGLVLTCAALHNFL 140

[Close]
BLAST of Cucsa.067660 vs. TAIR10
Match: AT5G12010.1 (AT5G12010.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-06
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1 

Query: 141 FNIKHSSAQNVIERAFGLLKGRWAILRGKSYYPVQVQCCTILACCLLHNL 191
           FN K S  Q V + AFG LKGRWA L+ ++   +Q     + ACC+LHN+
Sbjct: 399 FNEKMSEVQGVAKEAFGRLKGRWACLQKRTEVKLQDLPTVLGACCVLHNI 448

[Close]
BLAST of Cucsa.067660 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 223.4 bits (568), Expect = 3.4e-55
Identity = 130/238 (54.62%), Postives = 151/238 (63.45%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR--------GDSFSP- 60
           MD+R F ILCHLLRTRA L S E +DVEEMVA+FLH+LAHDVKNR             P 
Sbjct: 1   MDRRCFLILCHLLRTRADLESTEHVDVEEMVALFLHVLAHDVKNRQIQREFVRSSEIVPQ 60

Query: 61  -FQPMLLAMIQLHDELLKKPQPLHFFSIKL------NCFGALDETYIKVNVPIFYHPRHE 120
            F  +L+A+++LHDELL  PQP+    I +      NC GALD+ YIKVNV     PR+ 
Sbjct: 61  HFNMVLMAVLRLHDELLATPQPITSGCIDMRWHCFENCIGALDDMYIKVNVSAVDRPRYR 120

Query: 121 RR-----------------LRIMLVGWEGSAADSCILRDAISRPNKLQVLKE-------- 180
            R                    +L GWEGSAA+S  LRDA+SRPN L+VLKE        
Sbjct: 121 TRKGEVATNFLGVCDTKGDFVFILAGWEGSAANSRNLRDALSRPNGLKVLKEWRGTGNAP 180

Query: 181 -----YFNIKHSSAQNVIERAFGLLKGRWAILRGKSYYPVQVQCCTILACCLLHNLIN 193
                +FN+KHSSA NVIERA GLLKG WAILR KSYYPV+VQC TI+ACCLLHNLIN
Sbjct: 181 ETPKEFFNMKHSSAWNVIERASGLLKGCWAILREKSYYPVEVQCPTIMACCLLHNLIN 238

[Close]
BLAST of Cucsa.067660 vs. NCBI nr
Match: gi|659082639|ref|XP_008441953.1| (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 5.1e-51
Identity = 122/210 (58.10%), Postives = 137/210 (65.24%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFSP 60
           MD+R FAILCHLLRT AGL   E IDVEEMVAMFLHILAHDVKNR         G++ S 
Sbjct: 1   MDRRCFAILCHLLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSR 60

Query: 61  -FQPMLLAMIQLHDELLKKPQPL---------HFFSIKLNCFGALDETYIKVNVPIFYHP 120
            F  +LLA+++LHDELLKKPQP+          +F    NC GALD TYIKVNV     P
Sbjct: 61  HFNIVLLAILRLHDELLKKPQPVTNSCTDPRWKWFE---NCLGALDGTYIKVNVSAIDRP 120

Query: 121 RHERRLRIMLVGWEGSAADSCILRDAISRPNKLQVLKEYFNIKHSSAQNVIERAFGLLKG 180
           R ER     L  W G +             N     +E+FN+KH SA+NVIERAFGLLKG
Sbjct: 121 RGER---YHLSEWRGES-------------NAPTTAREFFNMKHLSARNVIERAFGLLKG 180

Query: 181 RWAILRGKSYYPVQVQCCTILACCLLHNLI 192
           RW ILRGKSYYPV VQC TI+ACCLLHNLI
Sbjct: 181 RWTILRGKSYYPVDVQCRTIMACCLLHNLI 191

[Close]
BLAST of Cucsa.067660 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 126/269 (46.84%), Postives = 141/269 (52.42%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFS- 60
           MD+R FAILCHLLRT AGL   E IDVEEMVAMFLHILAHDVKNR         G++ S 
Sbjct: 1   MDRRCFAILCHLLRTTAGLVETEVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSR 60

Query: 61  PFQPMLLAMIQLHDELLKKPQPL---------HFFSIKLNCFGALDETYIKVNVPIFYHP 120
            F  +LLA  +LHDELLKKPQP+          +F    NC GALD TYIKVNV     P
Sbjct: 61  HFNIVLLAGFRLHDELLKKPQPVTNSCTDPRWKWFE---NCLGALDGTYIKVNVSATDRP 120

Query: 121 RHERR-----------------LRIMLVGWEGSAADSCILRDAISRPNKLQVLKEYFNIK 180
           R+  R                    +L GWEGSAADS ILRDAISR N L+V K Y+ + 
Sbjct: 121 RYRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLC 180

Query: 181 HSSAQNV-------------------------IERAFGLLKGR----------------W 193
            +   N                            R F  +K                  W
Sbjct: 181 DAGYPNAEGFLAPYRGERYHLSEWRGESNAPTTAREFFNMKHSSARNVIERAFGLLKGRW 240

[Close]
BLAST of Cucsa.067660 vs. NCBI nr
Match: gi|659133321|ref|XP_008466673.1| (PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 5.1e-43
Identity = 114/218 (52.29%), Postives = 130/218 (59.63%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFSP 60
           MD+R  AIL HLLRT AGL   + IDVEEMVAMFLHILAHDVKNR         G++ S 
Sbjct: 1   MDRRCVAILGHLLRTTAGLVGTKVIDVEEMVAMFLHILAHDVKNRMIQREFVRSGETVSR 60

Query: 61  -FQPMLLAMIQLHDELLKKPQPLHFFSIKLNCFGALDETYIKVNVPIFYHPRHERRLRIM 120
            F  +LLA+++LHDELLKKPQP        N  GALD TYIKVNV            RI+
Sbjct: 61  HFNLVLLAVLRLHDELLKKPQP--------NFLGALDGTYIKVNVSATVVQGLAADSRIL 120

Query: 121 ----------------LVGWEGSAADSCILRDAISRPNKLQVLKEYFNIKHSSAQNVIER 180
                           L  + G        R   + P      +E+FN+KHSSA+NVIER
Sbjct: 121 GDAISRHNVLKVPKGFLASYRGERYHLSEWRGGGNAPT---TAREFFNMKHSSARNVIER 180

Query: 181 AFGLLKGRWAILRGKSYYPVQVQCCTILACCLLHNLIN 193
           AFGLLKG W ILRGKSYYPV VQ  TI+ CCLLHNLIN
Sbjct: 181 AFGLLKGHWTILRGKSYYPVDVQSRTIMVCCLLHNLIN 207

[Close]
BLAST of Cucsa.067660 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 176.4 bits (446), Expect = 4.8e-41
Identity = 118/267 (44.19%), Postives = 141/267 (52.81%), Query Frame = 1 

Query: 1   MDKRTFAILCHLLRTRAGLTSIECIDVEEMVAMFLHILAHDVKNR---------GDSFS- 60
           MD+RTFAILCHLLR  AGL+S E +DVEEMVAMFLH+LAHDVKNR         G++ S 
Sbjct: 15  MDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQQEFVRSGETVSR 74

Query: 61  PFQPMLLAMIQLHDELLKKPQPL------HFFSIKLNCFGALDETYIKVNVPIFYHPRHE 120
            F  +LLA+++L++EL+K+P P+        +    NC GALD TYIKVNVP    P   
Sbjct: 75  HFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDGTYIKVNVPAGDRPTFR 134

Query: 121 RR-----------------LRIMLVGWEGSAADSCILRDAISRPNKLQVLKEYFNIKHSS 180
            R                    +L GWEGSAADS ILRDAIS+ N LQV K Y+ +  + 
Sbjct: 135 TRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAG 194

Query: 181 AQNVIERAFGLLKGR------------------------------------------WAI 193
             N  E      KG+                                          W I
Sbjct: 195 YPNA-EGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTI 254

The following BLAST results are available for this feature:
BLAST of Cucsa.067660 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME3.3e-4144.19Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A2ZTW0_ORYSJ8.2e-3240.18Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_02038 PE=4 SV=1[more]
K4BJ65_SOLLC5.0e-2939.74Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A5BND9_VITVI6.5e-2937.12Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
E5GCB5_CUCME1.2e-2745.36Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cucsa.067660 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41980.14.8e-1527.41 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT5G35695.11.4e-0641.51 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT5G12010.16.9e-0646.00 unknown protein[more]
BLAST of Cucsa.067660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086609|ref|XP_008444024.1|3.4e-5554.62PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo][more]
gi|659082639|ref|XP_008441953.1|5.1e-5158.10PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo][more]
gi|659111563|ref|XP_008455792.1|1.3e-4346.84PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659133321|ref|XP_008466673.1|5.1e-4352.29PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|4.8e-4144.19retrotransposon protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.067660.1Cucsa.067660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 134..189
score: 1.8
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..191
score: 5.9
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 1..191
score: 5.9

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.067660Cucumber (Chinese Long) v2cgycuB061
Cucsa.067660Cucumber (Chinese Long) v3cgycucB064