Cucsa.060010 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.060010
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptionendoribonuclease L-PSP family protein
Locationscaffold00621 : 573085 .. 575257 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGACGGACTAAAACTATAGTGTGGGAGGAAGAAATCTAGAAGTAAAAAaGGAGAAGTCGCAGATGGCTATGTCCGCAGCTCACACCCTCCAAATTCCGGCCTCCACCGCCATTACACGGAGGCGATCCATCACTCCCTCTGCCGGCACCGCCGTGTCCTTGTGGAGGCGGCCTTCACCGGCCATTCCATCTATTTCAAGCCATCAAATGTCCTTCAAATGCCATGCCATTTCCAAGTGTACTACTGGTATTAATACGTCCCCTCATTCTCTTTGACCTATTTGGCTTCATCAATTTTCCTTTTTAAATCTTATTTTAAAGAAATTATTTATCCATTTTTATGTTAAAATAGCATTTTTtATAAAAGAAAAaTATAAACAACCTATTTTGATAAAAAAAAAAaTGATTATTGAATTCCTCTACGACAACATAAAAAAAaCGGAAAAAATAAAGTTAGTTAAAAAAGAAAAAAaTAAAAATAAAATACATCTATCATACACAAGAAAATAAATAGTTGAGATGTTGAAAATATGCATTTTAATAAAAACAAATGAATTAGGGAATTTTCCACAACTTTTAACAACTATCTCTATTAGTACGACACTATTTTGATGTGGTATCAAAAGCAAAATTATATGGGTGTATGTTTAAAGTAAAAATTATCGCATGAAGATATGTAAAGTTCTTCTGTCGTTACCAAATTCAAATGATTTTAATACTTTTAAACATTTTTTAGAGAAAATTATCTTTAGTTTCAAAATTTTGACGAATATGTGCAAAAATATTAAAAGTATCTACAAAAATGTAGGAAAAAATTTCAAATCTGATCAATCGATAGACCTCTAATAGATACAAAAATTTGTTATATATTATAAATATTTATTAGTTTATTTGACTAGTTTTTATATCTTTTtAGTTTTtAAATTTATAAAAATAGATTTGAAATAATAACCCATTTTAAATTGTAATATTAACTTTGATCTACACAAATCACTAAACAAAAAAATTAGATCTTAAATGAAACGTAACAAATTTAAGGTAAAATTTATATTTTTTTtCCCTAAAGATTATTCCACCACTTAATACCAATGTTTGTTTTGTGGCAGAAATCATAGGCATTGCAACTGACAATGCCCCAGAAGCATTGGGGCCATATTCTCAGGGAATCATAGCCAACAATCTTGTATATGTATCTGGCTCCCTTGGTCTAATTCCTGAGGTACTGTTTTTCAATGTTTAACATAAACATAGTTCAATTGATCAGTTCGGTTTCAATTATTTGTCATGAGTTCGTGCTCGACACGTATAATTGAGTATGTTTTTGGTTTGATGCAGACAGGGCAATTGATCTCAGATGATGTTGGAGAGCAAACTGAGCAGGTTATTGTTATTTTCTTTCTTTAAAAAGAAAGAAAAaTTAAATTTTGTTAGCATTAATTTCTGAGGAAATGAAATATTATTATGCAGGCCCTAAAAAATGTTGGTGCAATATTGAGAGCTGGAGGGGCTGATTATGATAGAGTGATTAAGACAACTATTATGTATGAAATCTTGAGTTGCAATCATTTTGCATCTATAGCCATCTTTTATCCCATGTTTTGGAAAATTGTACTCTCGCAGCTTTCGTTTCAAGAATTAGTCATTTGTTTGTTCTTCTCATTTTGTTTTTGGCAGGTTGGCTAATGTAGCAGATTTTACATTAGTAAATGAGATTTATGGAAAATGTAAGTTCTTTTCAAATGAATCATTTCAAAAGATCAAGAACATGGCATTTAAAGTTGTAAGTTGTTTGTTTTTTGACAGATTTTCCAAACAGCCCTGCACCAGCAAGATCAACATTTGCAGCTGGAGCATTACCCAAAAATGCTAAGATTGAAATTGATGCAATAGCTGTGCTTTGAATTGGAAGTTTATATTAATATAGTTTTTGAAGGCAACATTATCATCATAAATTTAAATAAGTTGGAGCGTTGGAGATATATAGCTTATGAAAGGGAACATATTCACCAAATTTACTATTTGGTTTGTGTATTATTACCTTATCTAGGCTTTATCTTGTTACCAACGTTTTATTATTGTAATAACTTTATATTTTCACTATCATATGCATTTAAGCTGTGGAAGTGAAAATAAAGAGGTAATGGAAGATAGTGTTGTCTTGGTTATATGAAGA

mRNA sequence

TGGACGGACTAAAACTATAGTGTGGGAGGAAGAAATCTAGAAGTAAAAAAGGAGAAGTCGCAGATGGCTATGTCCGCAGCTCACACCCTCCAAATTCCGGCCTCCACCGCCATTACACGGAGGCGATCCATCACTCCCTCTGCCGGCACCGCCGTGTCCTTGTGGAGGCGGCCTTCACCGGCCATTCCATCTATTTCAAGCCATCAAATGTCCTTCAAATGCCATGCCATTTCCAAGTGTACTACTGAAATCATAGGCATTGCAACTGACAATGCCCCAGAAGCATTGGGGCCATATTCTCAGGGAATCATAGCCAACAATCTTGTATATGTATCTGGCTCCCTTGGTCTAATTCCTGAGACAGGGCAATTGATCTCAGATGATGTTGGAGAGCAAACTGAGCAGGCCCTAAAAAATGTTGGTGCAATATTGAGAGCTGGAGGGGCTGATTATGATAGAGTGATTAAGACAACTATTATGTTGGCTAATGTAGCAGATTTTACATTAGTAAATGAGATTTATGGAAAATATTTTCCAAACAGCCCTGCACCAGCAAGATCAACATTTGCAGCTGGAGCATTACCCAAAAATGCTAAGATTGAAATTGATGCAATAGCTGTGCTTTGAATTGGAAGTTTATATTAATATAGTTTTTGAAGGCAACATTATCATCATAAATTTAAATAAGTTGGAGCGTTGGAGATATATAGCTTATGAAAGGGAACATATTCACCAAATTTACTATTTGGTTTGTGTATTATTACCTTATCTAGGCTTTATCTTGTTACCAACGTTTTATTATTGTAATAACTTTATATTTTCACTATCATATGCATTTAAGCTGTGGAAGTGAAAATAAAGAGGTAATGGAAGATAGTGTTGTCTTGGTTATATGAAGA

Coding sequence (CDS)

ATGGCTATGTCCGCAGCTCACACCCTCCAAATTCCGGCCTCCACCGCCATTACACGGAGGCGATCCATCACTCCCTCTGCCGGCACCGCCGTGTCCTTGTGGAGGCGGCCTTCACCGGCCATTCCATCTATTTCAAGCCATCAAATGTCCTTCAAATGCCATGCCATTTCCAAGTGTACTACTGAAATCATAGGCATTGCAACTGACAATGCCCCAGAAGCATTGGGGCCATATTCTCAGGGAATCATAGCCAACAATCTTGTATATGTATCTGGCTCCCTTGGTCTAATTCCTGAGACAGGGCAATTGATCTCAGATGATGTTGGAGAGCAAACTGAGCAGGCCCTAAAAAATGTTGGTGCAATATTGAGAGCTGGAGGGGCTGATTATGATAGAGTGATTAAGACAACTATTATGTTGGCTAATGTAGCAGATTTTACATTAGTAAATGAGATTTATGGAAAATATTTTCCAAACAGCCCTGCACCAGCAAGATCAACATTTGCAGCTGGAGCATTACCCAAAAATGCTAAGATTGAAATTGATGCAATAGCTGTGCTTTGA

Protein sequence

MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIAVL*
Homology
[Close]
BLAST of Cucsa.060010 vs. Swiss-Prot
Match: RIDA_ARATH (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.1e-41
Identity = 93/181 (51.38%), Postives = 124/181 (68.51%), Query Frame = 1 

Query: 7   HTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCTTEIIGI 66
           +T  +  STA+   R+   +AG   + +   S  +  +SS    F   ++S  + +   +
Sbjct: 10  NTPTLDLSTALRSTRTPLVAAGVGCATFAGVS--LFRMSSRSPPFASLSVSASSVKKEVV 69

Query: 67  ATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRAG 126
           +T+ AP ALGPYSQ I ANNLV++SG LGLIPETG+ +S+ V +QTEQ LKN+G IL+A 
Sbjct: 70  STEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKAS 129

Query: 127 GADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIAV 186
           GADY  V+KTTIMLA++ADF  VNEIY KYFP +P+PARST+   ALP NAKIEI+ IA 
Sbjct: 130 GADYSSVVKTTIMLADLADFKTVNEIYAKYFP-APSPARSTYQVAALPLNAKIEIECIAT 187

Query: 187 L 188
           L
Sbjct: 190 L 187

[Close]
BLAST of Cucsa.060010 vs. Swiss-Prot
Match: YSD2_CAEEL (RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 71/129 (55.04%), Postives = 94/129 (72.87%), Query Frame = 1 

Query: 58  KCTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALK 117
           K T +II  A  NAP A+GPYSQ + A N +Y+SGSLGL P+TG L  + V EQT Q+LK
Sbjct: 38  KVTRQIISSA--NAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDL-KEGVVEQTHQSLK 97

Query: 118 NVGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNA 177
           N+G +L+A GADY  V+KTT++L N+ADF  VNE+YG+YF  SP PAR+ +   ALPK  
Sbjct: 98  NLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYF-KSPYPARAAYQVAALPKGG 157

Query: 178 KIEIDAIAV 187
            +EI+A+A+
Sbjct: 158 LVEIEAVAI 162

[Close]
BLAST of Cucsa.060010 vs. Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.2e-30
Identity = 60/121 (49.59%), Postives = 89/121 (73.55%), Query Frame = 1 

Query: 66  IATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRA 125
           I+T  AP A+GPYSQ ++ +  +Y+SG +G+ P +GQL+S  V E+ +QALKN+G IL+A
Sbjct: 9   ISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKA 68

Query: 126 GGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIA 185
            G D+  V+KTT++LA++ DF  VNEIY +YF  S  PAR+ +   ALPK ++IEI+A+A
Sbjct: 69  AGCDFTNVVKTTVLLADINDFNTVNEIYKQYF-KSNFPARAAYQVAALPKGSRIEIEAVA 128

Query: 186 V 187
           +
Sbjct: 129 I 128

[Close]
BLAST of Cucsa.060010 vs. Swiss-Prot
Match: UK114_RAT (Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-28
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = 1 

Query: 66  IATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRA 125
           I+T  AP A+G YSQ ++ +  +YVSG +G+ P +GQL+   V E+ +QALKN+G IL+A
Sbjct: 9   ISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKA 68

Query: 126 GGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIA 185
            G D+  V+KTT++LA++ DF  VNEIY  YF  +  PAR+ +   ALPK ++IEI+AIA
Sbjct: 69  AGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGN-LPARAAYQVAALPKGSRIEIEAIA 128

Query: 186 V 187
           V
Sbjct: 129 V 128

[Close]
BLAST of Cucsa.060010 vs. Swiss-Prot
Match: UK114_BOVIN (Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3)

HSP 1 Score: 126.7 bits (317), Expect = 2.7e-28
Identity = 57/121 (47.11%), Postives = 87/121 (71.90%), Query Frame = 1 

Query: 66  IATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRA 125
           I+T  AP A+GPYSQ ++ +  +Y+SG LG+ P +GQL+   V E+ +QAL N+G IL+A
Sbjct: 9   ISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKA 68

Query: 126 GGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIA 185
            G D+  V+K T++LA++ DF+ VN++Y +YF +S  PAR+ +   ALPK  ++EI+AIA
Sbjct: 69  AGCDFTNVVKATVLLADINDFSTVNDVYKQYFQSS-FPARAAYQVAALPKGGRVEIEAIA 128

Query: 186 V 187
           V
Sbjct: 129 V 128

[Close]
BLAST of Cucsa.060010 vs. TrEMBL
Match: A0RZC7_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus GN=CHRD PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 2.9e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 

Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of Cucsa.060010 vs. TrEMBL
Match: A0A0A0L6A5_CUCSA (Plastid-lipid associated protein OS=Cucumis sativus GN=Csa_3G076580 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.6e-96
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 1 

Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSA TAVSLWRRPSPAIPSISS QMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPN PAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of Cucsa.060010 vs. TrEMBL
Match: A0A0B2PWL0_GLYSO (Ribonuclease UK114-like protein OS=Glycine soja GN=glysoja_019895 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.2e-41
Identity = 98/189 (51.85%), Postives = 123/189 (65.08%), Query Frame = 1 

Query: 5   AAHTLQIPA--STAITRRRSITPSAG----TAVSLWRRPSPAIPSISSHQMSFKCHAISK 64
           +  + Q+PA   +A+  R S+    G       S WR  S        H +SF C +IS 
Sbjct: 6   SVRSFQVPAMEGSALRNRASLAARVGCLSVAGTSFWRSSSSP-----KHSLSFTCLSISS 65

Query: 65  CTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKN 124
            T     + T+ AP ALGPYSQ I +NNL++VSG LGL+PETG+ +SDDV +QTEQ LKN
Sbjct: 66  ETRIKENVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDDVEDQTEQLLKN 125

Query: 125 VGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAK 184
           +G IL+AGGA Y  V+KTTIMLA++ DF  VNEIY KYFP SP PARST+   ALP +AK
Sbjct: 126 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFP-SPFPARSTYQVAALPLDAK 185

Query: 185 IEIDAIAVL 188
           IEI+ IA L
Sbjct: 186 IEIECIATL 188

[Close]
BLAST of Cucsa.060010 vs. TrEMBL
Match: I1M6R4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G023600 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.2e-41
Identity = 98/189 (51.85%), Postives = 123/189 (65.08%), Query Frame = 1 

Query: 5   AAHTLQIPA--STAITRRRSITPSAG----TAVSLWRRPSPAIPSISSHQMSFKCHAISK 64
           +  + Q+PA   +A+  R S+    G       S WR  S        H +SF C +IS 
Sbjct: 6   SVRSFQVPAMEGSALRNRASLAARVGCLSVAGTSFWRSSSSP-----KHSLSFTCLSISS 65

Query: 65  CTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKN 124
            T     + T+ AP ALGPYSQ I +NNL++VSG LGL+PETG+ +SDDV +QTEQ LKN
Sbjct: 66  ETRIKENVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDDVEDQTEQLLKN 125

Query: 125 VGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAK 184
           +G IL+AGGA Y  V+KTTIMLA++ DF  VNEIY KYFP SP PARST+   ALP +AK
Sbjct: 126 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFP-SPFPARSTYQVAALPLDAK 185

Query: 185 IEIDAIAVL 188
           IEI+ IA L
Sbjct: 186 IEIECIATL 188

[Close]
BLAST of Cucsa.060010 vs. TrEMBL
Match: I3SSA5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.2e-41
Identity = 102/189 (53.97%), Postives = 122/189 (64.55%), Query Frame = 1 

Query: 5   AAHTLQIPA--STAITRRRSIT----PSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISK 64
           AA    IPA   +A+  R S+     PS+  A S WR PSP     S     F C +IS 
Sbjct: 6   AATCFHIPAINGSALRNRTSLAIATRPSSPAAASFWRSPSP-----SKRPSPFTCLSISS 65

Query: 65  CTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKN 124
                  + T+ AP ALGPYSQ    NNL++VSG LGL+PETG+ ISD+V EQTEQ LKN
Sbjct: 66  DARIKEAVHTERAPAALGPYSQANKVNNLLFVSGVLGLVPETGKFISDNVEEQTEQLLKN 125

Query: 125 VGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAK 184
           +G IL+AGGA Y  V+KTTIMLA++ DF  VNEIY KYFP SP PARST+   ALP +AK
Sbjct: 126 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFP-SPFPARSTYQVAALPLDAK 185

Query: 185 IEIDAIAVL 188
           IEI+ IA L
Sbjct: 186 IEIECIATL 188

[Close]
BLAST of Cucsa.060010 vs. TAIR10
Match: AT3G20390.1 (AT3G20390.1 endoribonuclease L-PSP family protein)

HSP 1 Score: 168.7 bits (426), Expect = 3.4e-42
Identity = 93/181 (51.38%), Postives = 124/181 (68.51%), Query Frame = 1 

Query: 7   HTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCTTEIIGI 66
           +T  +  STA+   R+   +AG   + +   S  +  +SS    F   ++S  + +   +
Sbjct: 10  NTPTLDLSTALRSTRTPLVAAGVGCATFAGVS--LFRMSSRSPPFASLSVSASSVKKEVV 69

Query: 67  ATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRAG 126
           +T+ AP ALGPYSQ I ANNLV++SG LGLIPETG+ +S+ V +QTEQ LKN+G IL+A 
Sbjct: 70  STEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVLKNMGEILKAS 129

Query: 127 GADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIAV 186
           GADY  V+KTTIMLA++ADF  VNEIY KYFP +P+PARST+   ALP NAKIEI+ IA 
Sbjct: 130 GADYSSVVKTTIMLADLADFKTVNEIYAKYFP-APSPARSTYQVAALPLNAKIEIECIAT 187

Query: 187 L 188
           L
Sbjct: 190 L 187

[Close]
BLAST of Cucsa.060010 vs. NCBI nr
Match: gi|525507246|ref|NP_001267661.1| (chordin [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 

Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of Cucsa.060010 vs. NCBI nr
Match: gi|700200989|gb|KGN56122.1| (Plastid-lipid associated protein [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 6.6e-96
Identity = 184/187 (98.40%), Postives = 184/187 (98.40%), Query Frame = 1 

Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITRRRSITPSA TAVSLWRRPSPAIPSISS QMSFKCHAISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRRRSITPSASTAVSLWRRPSPAIPSISSRQMSFKCHAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG
Sbjct: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPN PAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNCPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of Cucsa.060010 vs. NCBI nr
Match: gi|659126881|ref|XP_008463411.1| (PREDICTED: ribonuclease UK114-like [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.4e-91
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 1 

Query: 1   MAMSAAHTLQIPASTAITRRRSITPSAGTAVSLWRRPSPAIPSISSHQMSFKCHAISKCT 60
           MAMSAAHTLQIPASTAITR RS TPSAGTAVSLWRRP PAIPSISS QMSFKC AISKCT
Sbjct: 1   MAMSAAHTLQIPASTAITRGRSFTPSAGTAVSLWRRPLPAIPSISSRQMSFKCLAISKCT 60

Query: 61  TEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVG 120
           TEI GIATDNAPEALGPYSQGIIANN++YVSGSLGLIP+TG+LISDDVGEQTEQALKNVG
Sbjct: 61  TEIKGIATDNAPEALGPYSQGIIANNILYVSGSLGLIPKTGELISDDVGEQTEQALKNVG 120

Query: 121 AILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIE 180
           AILRAGGADYDRV+KTTIMLANVADFTLVNEIY KYFPNSPAPARSTFAAGALPKNAKIE
Sbjct: 121 AILRAGGADYDRVVKTTIMLANVADFTLVNEIYAKYFPNSPAPARSTFAAGALPKNAKIE 180

Query: 181 IDAIAVL 188
           IDAIAVL
Sbjct: 181 IDAIAVL 187

[Close]
BLAST of Cucsa.060010 vs. NCBI nr
Match: gi|734348739|gb|KHN11922.1| (Ribonuclease UK114-like protein [Glycine soja])

HSP 1 Score: 176.4 bits (446), Expect = 4.7e-41
Identity = 98/189 (51.85%), Postives = 123/189 (65.08%), Query Frame = 1 

Query: 5   AAHTLQIPA--STAITRRRSITPSAG----TAVSLWRRPSPAIPSISSHQMSFKCHAISK 64
           +  + Q+PA   +A+  R S+    G       S WR  S        H +SF C +IS 
Sbjct: 6   SVRSFQVPAMEGSALRNRASLAARVGCLSVAGTSFWRSSSSP-----KHSLSFTCLSISS 65

Query: 65  CTTEIIGIATDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKN 124
            T     + T+ AP ALGPYSQ I +NNL++VSG LGL+PETG+ +SDDV +QTEQ LKN
Sbjct: 66  ETRIKENVQTEGAPAALGPYSQAIKSNNLLFVSGVLGLVPETGKFVSDDVEDQTEQLLKN 125

Query: 125 VGAILRAGGADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAK 184
           +G IL+AGGA Y  V+KTTIMLA++ DF  VNEIY KYFP SP PARST+   ALP +AK
Sbjct: 126 MGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYAKYFP-SPFPARSTYQVAALPLDAK 185

Query: 185 IEIDAIAVL 188
           IEI+ IA L
Sbjct: 186 IEIECIATL 188

[Close]
BLAST of Cucsa.060010 vs. NCBI nr
Match: gi|727586352|ref|XP_010466224.1| (PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Camelina sativa])

HSP 1 Score: 176.4 bits (446), Expect = 4.7e-41
Identity = 100/180 (55.56%), Postives = 121/180 (67.22%), Query Frame = 1 

Query: 14  STAITRRRSITPSAGTA------VSLWRRPSPAIPSISSHQMSFKCHAISKCTTEIIGIA 73
           +TA+   RS   +AG        VSL+R  S   P  +S  +S    A  K  T      
Sbjct: 17  TTALRSTRSPLVAAGVGCATFAGVSLFRMSSSKSPPFASLSVSASSSAKKKVVT------ 76

Query: 74  TDNAPEALGPYSQGIIANNLVYVSGSLGLIPETGQLISDDVGEQTEQALKNVGAILRAGG 133
           TD AP ALGPYSQ IIANNL++VSG LGL+PETG+ +SD V +QTEQ LKN+G IL+AGG
Sbjct: 77  TDKAPAALGPYSQAIIANNLLFVSGVLGLVPETGKFVSDSVEDQTEQLLKNMGEILKAGG 136

Query: 134 ADYDRVIKTTIMLANVADFTLVNEIYGKYFPNSPAPARSTFAAGALPKNAKIEIDAIAVL 188
           ADY  V+KTTIMLA++ DF  VNEIY KYFP +P+PARST+   ALP NAKIEI+ IA L
Sbjct: 137 ADYSSVVKTTIMLADLGDFKKVNEIYAKYFP-APSPARSTYQVAALPLNAKIEIECIATL 189

The following BLAST results are available for this feature:
BLAST of Cucsa.060010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIDA_ARATH6.1e-4151.38Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana GN=RIDA... [more]
YSD2_CAEEL1.8e-3255.04RutC family protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=3 SV=3[more]
UK114_HUMAN8.2e-3049.59Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1[more]
UK114_RAT2.0e-2849.59Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3[more]
UK114_BOVIN2.7e-2847.11Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3[more]
BLAST of Cucsa.060010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0RZC7_CUCSA2.9e-98100.00Plastid-lipid associated protein OS=Cucumis sativus GN=CHRD PE=2 SV=1[more]
A0A0A0L6A5_CUCSA4.6e-9698.40Plastid-lipid associated protein OS=Cucumis sativus GN=Csa_3G076580 PE=4 SV=1[more]
A0A0B2PWL0_GLYSO3.2e-4151.85Ribonuclease UK114-like protein OS=Glycine soja GN=glysoja_019895 PE=4 SV=1[more]
I1M6R4_SOYBN3.2e-4151.85Uncharacterized protein OS=Glycine max GN=GLYMA_14G023600 PE=4 SV=1[more]
I3SSA5_LOTJA4.2e-4153.97Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
BLAST of Cucsa.060010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G20390.13.4e-4251.38 endoribonuclease L-PSP family protein[more]
BLAST of Cucsa.060010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|525507246|ref|NP_001267661.1|4.1e-98100.00chordin [Cucumis sativus][more]
gi|700200989|gb|KGN56122.1|6.6e-9698.40Plastid-lipid associated protein [Cucumis sativus][more]
gi|659126881|ref|XP_008463411.1|6.4e-9193.58PREDICTED: ribonuclease UK114-like [Cucumis melo][more]
gi|734348739|gb|KHN11922.1|4.7e-4151.85Ribonuclease UK114-like protein [Glycine soja][more]
gi|727586352|ref|XP_010466224.1|4.7e-4155.56PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Camelina sativ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006056RidA
IPR006175YjgF/YER057c/UK114
IPR013813Endoribonuclease L-PSP/chorismate mutase-like
IPR019897RidA_CS
IPR006175YjgF/YER057c/UK114
IPR013813Endoribonuclease L-PSP/chorismate mutase-like
IPR006175YjgF/YER057c/UK114
IPR013813Endoribonuclease L-PSP/chorismate mutase-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0019239 deaminase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.060010.1Cucsa.060010.1mRNA
Cucsa.060010.2Cucsa.060010.2mRNA
Cucsa.060010.3Cucsa.060010.3mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006175YjgF/YER057c/UK114 familyPANTHERPTHR11803TRANSLATION INITIATION INHIBITORcoord: 40..117
score: 1.7
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 69..119
score: 9.2
IPR013813Endoribonuclease L-PSP/chorismate mutase-likeGENE3DG3DSA:3.30.1330.40coord: 66..118
score: 4.2
IPR013813Endoribonuclease L-PSP/chorismate mutase-likeunknownSSF55298YjgF-likecoord: 63..121
score: 5.18
NoneNo IPR availablePANTHERPTHR11803:SF13RIBONUCLEASE UK114coord: 40..117
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.060010Cucurbita maxima (Rimu)cgycmaB0080
Cucsa.060010Cucurbita maxima (Rimu)cgycmaB0081
Cucsa.060010Cucurbita moschata (Rifu)cgycmoB0075
Cucsa.060010Cucurbita moschata (Rifu)cgycmoB0076
Cucsa.060010Wild cucumber (PI 183967)cgycpiB044
Cucsa.060010Cucumber (Chinese Long) v2cgycuB044
Cucsa.060010Melon (DHL92) v3.5.1cgymeB048
Cucsa.060010Watermelon (Charleston Gray)cgywcgB049
Cucsa.060010Watermelon (97103) v1cgywmB048
Cucsa.060010Cucurbita pepo (Zucchini)cgycpeB0077
Cucsa.060010Bottle gourd (USVL1VR-Ls)cgylsiB048
Cucsa.060010Melon (DHL92) v3.6.1cgymedB047
Cucsa.060010Silver-seed gourdcarcgyB0738
Cucsa.060010Cucumber (Chinese Long) v3cgycucB046
Cucsa.060010Watermelon (97103) v2cgywmbB048
Cucsa.060010Wax gourdcgywgoB049