Cucsa.059720 (gene) Cucumber (Gy14) v1

NameCucsa.059720
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionLOB domain-containing protein 1
Locationscaffold00621 : 273442 .. 273642 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTCGTCGCGTTTCCTTCACCATCGCCAACCGTTCAGGCCTCCATGGTGGTTAGTTCGTATGCGGCATGCAAGATTCTCCGTTGGAGATGCGTCGAGATTGGCGGCCTATTTTCCTCCCTTTGAGCCTCTCAAGTTCACCATTGCTCACTGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCTGGTACGTCCTTAA

mRNA sequence

TTGTCGTCGCGTTTCCTTCACCATCGCCAACCGTTCAGGCCTCCATGGTGGTTAGTTCGTATGCGGCATGCAAGATTCTCCGTTGGAGATGCCCTCTCAAGTTCACCATTGCTCACTGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCTGGTACGTCCTTAA

Coding sequence (CDS)

TTGTCGTCGCGTTTCCTTCACCATCGCCAACCGTTCAGGCCTCCATGGTGGTTAGTTCGTATGCGGCATGCAAGATTCTCCGTTGGAGATGCCCTCTCAAGTTCACCATTGCTCACTGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCTGGTACGTCCTTAA

Protein sequence

VVAFPSPSPTVQASMVVSSYAACKILRWRCPLKFTIAHCIFGASNIIKLLLVRP*
BLAST of Cucsa.059720 vs. Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 8.3e-07
Identity = 32/64 (50.00%), Postives = 35/64 (54.69%), Query Frame = 1

Query: 5   PSPSPTVQASMVVSSYAACKILRWRC--------------PLKFTIAHCIFGASNIIKLL 55
           PSP    Q  +V+S  AACKILR RC              P KFTIAH +FGASNIIK L
Sbjct: 41  PSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 100

BLAST of Cucsa.059720 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.3e-07
Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1

Query: 6  SPSPTVQASMVVSSYAACKILRWRC--------------PLKFTIAHCIFGASNIIKLLL 55
          SP P++   +V+S  AACKILR RC              P KFTIAH +FGASNIIK L 
Sbjct: 20 SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

BLAST of Cucsa.059720 vs. TrEMBL
Match: V7BFQ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-06
Identity = 37/72 (51.39%), Postives = 41/72 (56.94%), Query Frame = 1

Query: 4   FPSPSPTVQAS-------MVVSSYAACKILRWRC--------------PLKFTIAHCIFG 55
           FPSPSP+  A+       +VVS  AACKILR RC              PLKFTIAH +FG
Sbjct: 43  FPSPSPSPSAAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFG 102

BLAST of Cucsa.059720 vs. TAIR10
Match: AT2G28500.1 (AT2G28500.1 LOB domain-containing protein 11)

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-08
Identity = 32/64 (50.00%), Postives = 35/64 (54.69%), Query Frame = 1

Query: 5   PSPSPTVQASMVVSSYAACKILRWRC--------------PLKFTIAHCIFGASNIIKLL 55
           PSP    Q  +V+S  AACKILR RC              P KFTIAH +FGASNIIK L
Sbjct: 41  PSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFL 100

BLAST of Cucsa.059720 vs. TAIR10
Match: AT1G07900.1 (AT1G07900.1 LOB domain-containing protein 1)

HSP 1 Score: 53.5 bits (127), Expect = 4.7e-08
Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1

Query: 6  SPSPTVQASMVVSSYAACKILRWRC--------------PLKFTIAHCIFGASNIIKLLL 55
          SP P++   +V+S  AACKILR RC              P KFTIAH +FGASNIIK L 
Sbjct: 20 SPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQ 79

BLAST of Cucsa.059720 vs. NCBI nr
Match: gi|659072131|ref|XP_008463550.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 41/64 (64.06%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 5  PSPSPTVQASMVVSSYAACKILRWRC--------------PLKFTIAHCIFGASNIIKLL 55
          PSP PTVQA +VVS  AACKILR RC              PLKFTIAH IFGASNIIKLL
Sbjct: 23 PSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLL 82

BLAST of Cucsa.059720 vs. NCBI nr
Match: gi|449459130|ref|XP_004147299.1| (PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 40/64 (62.50%), Postives = 42/64 (65.62%), Query Frame = 1

Query: 5  PSPSPTVQASMVVSSYAACKILRWRC--------------PLKFTIAHCIFGASNIIKLL 55
          PSP PTVQA +VV+  AACKILR RC              PLKFTIAH IFGASNIIKLL
Sbjct: 26 PSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLL 85

BLAST of Cucsa.059720 vs. NCBI nr
Match: gi|593686006|ref|XP_007143674.1| (hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris])

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-06
Identity = 37/72 (51.39%), Postives = 41/72 (56.94%), Query Frame = 1

Query: 4   FPSPSPTVQAS-------MVVSSYAACKILRWRC--------------PLKFTIAHCIFG 55
           FPSPSP+  A+       +VVS  AACKILR RC              PLKFTIAH +FG
Sbjct: 43  FPSPSPSPSAAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFG 102

BLAST of Cucsa.059720 vs. NCBI nr
Match: gi|657943730|ref|XP_008370637.1| (PREDICTED: LOB domain-containing protein 1-like [Malus domestica])

HSP 1 Score: 57.8 bits (138), Expect = 7.1e-06
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1

Query: 5  PSPSPTVQASMVVSSYAACKILRWRC--------------PLKFTIAHCIFGASNIIKLL 55
          P+P+PT    +V+S  AACKILR RC              P+KFTIAH +FGASNIIK L
Sbjct: 32 PTPTPTPSPPVVISPCAACKILRRRCADKCVLAPYFPPSEPVKFTIAHRVFGASNIIKFL 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LBD11_ARATH8.3e-0750.00LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2[more]
LBD1_ARATH8.3e-0749.21LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
V7BFQ1_PHAVU3.8e-0651.39Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G092000g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G28500.14.7e-0850.00 LOB domain-containing protein 11[more]
AT1G07900.14.7e-0849.21 LOB domain-containing protein 1[more]
Match NameE-valueIdentityDescription
gi|659072131|ref|XP_008463550.1|1.8e-0964.06PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
gi|449459130|ref|XP_004147299.1|4.0e-0962.50PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus][more]
gi|593686006|ref|XP_007143674.1|5.4e-0651.39hypothetical protein PHAVU_007G092000g [Phaseolus vulgaris][more]
gi|657943730|ref|XP_008370637.1|7.1e-0650.00PREDICTED: LOB domain-containing protein 1-like [Malus domestica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.059720.1Cucsa.059720.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None