Cucsa.059710 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.059710
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein of unknown function (DUF962)
Location	scaffold00621 : 266174 .. 266357 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTTCGATCCCGAGAGGCATTTTGGGCGCATATCACAGCAACCCAATAAATATTTTCATTCATATTCTCTTTGTTTGGGCTATCTTCTTCACTATGCTCATGCTTTTCTATTATACCCCTTTCTTTTACTCTTTTTCCAAATGCCCTTGTGGCTTCAATACTGGCTTTGTTTTGAAGT

mRNA sequence

ATGGATTGTTCGATCCCGAGAGGCATTTTGGGCGCATATCACAGCAACCCAATAAATATTTTCATTCATATTCTCTTTGTTTGGGCTATCTTCTTCACTATGCTCATGCTTTTCTATTATACCCCTTTCTTTTACTCTTTTTCCAAATGCCCTTGTGGCTTCAATACTGGCTTTGTTTTGAAGT

Coding sequence (CDS)

ATGGATTGTTCGATCCCGAGAGGCATTTTGGGCGCATATCACAGCAACCCAATAAATATTTTCATTCATATTCTCTTTGTTTGGGCTATCTTCTTCACTATGCTCATGCTTTTCTATTATACCCCTTTCTTTTACTCTTTTTCCAAATGCCCTTGTGGCTTCAATACTGGCTTTGTTTTGAAGT

Protein sequence

MDCSIPRGILGAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVLKX

Homology

[Close]

BLAST of Cucsa.059710 vs. TrEMBL
Match: A0A0A0LQ68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G038330 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-19
Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVL 61
          GAYHSNPINIFIHILFVW IFFT LMLFYYTP FYSF KCPCGFNTG VL
Sbjct: 17 GAYHSNPINIFIHILFVWPIFFTGLMLFYYTPSFYSFPKCPCGFNTGLVL 66

[Close]

BLAST of Cucsa.059710 vs. TrEMBL
Match: A0A0A0LP54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009840 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVL 61
          GAYHSNP+NIFIH+LFVW IFFT LM  Y+TP FY+  K PCGF+ G VL
Sbjct: 17 GAYHSNPMNIFIHVLFVWPIFFTSLMYLYFTPSFYTIPKSPCGFDHGLVL 66

[Close]

BLAST of Cucsa.059710 vs. TrEMBL
Match: A5B816_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019656 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-09
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFY---SFSKCPCGFNTGFVL 61
          GAYHS+P+N+F+H+LFVW +FFT L+LFY+TP F+        P GFN  F+L
Sbjct: 17 GAYHSBPVNVFLHMLFVWPLFFTALVLFYFTPSFFILPQIGLLPSGFNHTFLL 69

[Close]

BLAST of Cucsa.059710 vs. TrEMBL
Match: A0A0B0NNJ9_GOSAR (Putative endoplasmic reticulum membrane C16E8.02 OS=Gossypium arboreum GN=F383_05908 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSK---CPCGFN 56
          GAYHSNPINIFIH +FVW IFFT L+LFY+TP    FS+    P GFN
Sbjct: 18 GAYHSNPINIFIHTVFVWPIFFTSLVLFYFTPTICDFSQSGILPSGFN 65

[Close]

BLAST of Cucsa.059710 vs. TrEMBL
Match: F6GT68_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06380 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-09
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFY---SFSKCPCGFNTGFVL 61
          GAYHS+P+N+F+H+LFVW +FFT L+LFY+TP F+        P GFN  F+L
Sbjct: 14 GAYHSDPVNVFLHMLFVWPLFFTALVLFYFTPSFFILPQIGLLPSGFNHTFLL 66

[Close]

BLAST of Cucsa.059710 vs. TAIR10
Match: AT1G18720.1 (AT1G18720.1 Protein of unknown function (DUF962))

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-08
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFY-YTPFF------YSFSKCPCG---FNTGFV 60
          GAYHSNPINI IHI+FVW IFF++L+L +  TP F      +S S    G   FN GF+
Sbjct: 18 GAYHSNPINILIHIIFVWPIFFSVLLLLHSSTPIFDPSQLGFSQSLTLDGVLRFNVGFI 76

[Close]

BLAST of Cucsa.059710 vs. TAIR10
Match: AT1G74440.1 (AT1G74440.1 Protein of unknown function (DUF962))

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 21/32 (65.62%), Postives = 22/32 (68.75%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTP 43
          GAYHSNPINI IH LFVW   F  L+  Y TP
Sbjct: 18 GAYHSNPINIIIHTLFVWPNVFATLLFLYSTP 49

[Close]

BLAST of Cucsa.059710 vs. NCBI nr
Match: gi|659066423|ref|XP_008444013.1| (PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W-like [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-19
Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVL 61
          GAYHSNPINIFIHILFVW IFFT LMLFYYTP FYSF KCPCGFNTG VL
Sbjct: 17 GAYHSNPINIFIHILFVWPIFFTGLMLFYYTPSFYSFPKCPCGFNTGLVL 66

[Close]

BLAST of Cucsa.059710 vs. NCBI nr
Match: gi|778656883|ref|XP_004137417.2| (PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-19
Identity = 45/50 (90.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVL 61
          GAYHSNPINIFIHILFVW IFFT LMLFYYTP FYSF KCPCGFNTG VL
Sbjct: 17 GAYHSNPINIFIHILFVWPIFFTGLMLFYYTPSFYSFPKCPCGFNTGLVL 66

[Close]

BLAST of Cucsa.059710 vs. NCBI nr
Match: gi|659105955|ref|XP_008453216.1| (PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVL 61
          GAYHSNP+NIFIH+LFVW IFFT LM  Y+TP FY+  K PCGF+ G VL
Sbjct: 17 GAYHSNPMNIFIHVLFVWPIFFTSLMYLYFTPSFYTIPKSPCGFDHGLVL 66

[Close]

BLAST of Cucsa.059710 vs. NCBI nr
Match: gi|449440804|ref|XP_004138174.1| (PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVL 61
          GAYHSNP+NIFIH+LFVW IFFT LM  Y+TP FY+  K PCGF+ G VL
Sbjct: 17 GAYHSNPMNIFIHVLFVWPIFFTSLMYLYFTPSFYTIPKSPCGFDHGLVL 66

[Close]

BLAST of Cucsa.059710 vs. NCBI nr
Match: gi|1000976247|ref|XP_015572079.1| (PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Ricinus communis])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1


Query: 11 GAYHSNPINIFIHILFVWAIFFTMLMLFYYTPFFYSFSKCPCGFNTGFVL 61
          GAYHSNPINI IHILFVW IFFT LMLFY+TP  +  S+   G + G ++
Sbjct: 18 GAYHSNPINIMIHILFVWPIFFTSLMLFYFTPSIFDISQIGFGGSHGLLM 67

The following BLAST results are available for this feature:

BLAST of Cucsa.059710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ68_CUCSA	3.4e-19	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G038330 PE=4 SV=1	[more]
A0A0A0LP54_CUCSA	1.2e-13	70.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009840 PE=4 SV=1	[more]
A5B816_VITVI	1.4e-09	54.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019656 PE=4 SV=1	[more]
A0A0B0NNJ9_GOSAR	2.4e-09	66.67	Putative endoplasmic reticulum membrane C16E8.02 OS=Gossypium arboreum GN=F383_0...	[more]
F6GT68_VITVI	3.1e-09	54.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06380 PE=4 SV=...	[more]

BLAST of Cucsa.059710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18720.1	3.1e-08	52.54	Protein of unknown function (DUF962)	[more]
AT1G74440.1	1.3e-06	65.63	Protein of unknown function (DUF962)	[more]

BLAST of Cucsa.059710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066423\|ref\|XP_008444013.1\|	4.8e-19	90.00	PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W-like [...	[more]
gi\|778656883\|ref\|XP_004137417.2\|	4.8e-19	90.00	PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W [Cucum...	[more]
gi\|659105955\|ref\|XP_008453216.1\|	1.8e-13	70.00	PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W [Cucum...	[more]
gi\|449440804\|ref\|XP_004138174.1\|	1.8e-13	70.00	PREDICTED: uncharacterized endoplasmic reticulum membrane protein YGL010W [Cucum...	[more]
gi\|1000976247\|ref\|XP_015572079.1\|	2.0e-09	62.00	PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Rici...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009305	DUF962

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.059710.1	Cucsa.059710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009305	Protein of unknown function DUF962	PFAM	PF06127	DUF962	coord: 12..55 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.059710	Silver-seed gourd	carcgyB0738
Cucsa.059710	Silver-seed gourd	carcgyB0904
Cucsa.059710	Cucumber (Chinese Long) v3	cgycucB046
Cucsa.059710	Watermelon (97103) v2	cgywmbB048
Cucsa.059710	Wax gourd	cgywgoB049
Cucsa.059710	Cucurbita maxima (Rimu)	cgycmaB0080
Cucsa.059710	Cucurbita maxima (Rimu)	cgycmaB0081
Cucsa.059710	Cucurbita moschata (Rifu)	cgycmoB0075
Cucsa.059710	Cucurbita moschata (Rifu)	cgycmoB0076
Cucsa.059710	Wild cucumber (PI 183967)	cgycpiB044
Cucsa.059710	Cucumber (Chinese Long) v2	cgycuB044
Cucsa.059710	Melon (DHL92) v3.5.1	cgymeB048
Cucsa.059710	Watermelon (Charleston Gray)	cgywcgB049
Cucsa.059710	Watermelon (97103) v1	cgywmB048
Cucsa.059710	Cucurbita pepo (Zucchini)	cgycpeB0076
Cucsa.059710	Cucurbita pepo (Zucchini)	cgycpeB0077
Cucsa.059710	Bottle gourd (USVL1VR-Ls)	cgylsiB048
Cucsa.059710	Melon (DHL92) v3.6.1	cgymedB047