Cucsa.059140 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.059140
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description30S ribosomal protein S10-like
Locationscaffold00614 : 1236738 .. 1236932 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCATTACCTAAAAAAAAaGCTCATTTATTGTGTTCTTAAATCCCTTCATATCCATAAGGATGCAAGATTCCAATTTGAAATTAAAACCCACCAACGTCTCATTGATATTTTGCACCCTATTGCCCAAACAATCAATTCTTTGATGCAATTCGACCTTTCAGTTGGTGTTGACGTAGGAGGAAGAAATTGA

mRNA sequence

ATGTGCCATTACCTAAAAAAAAAGCTCATTTATTGTGTTCTTAAATCCCTTCATATCCATAAGGATGCAAGATTCCAATTTGAAATTAAAACCCACCAACGTCTCATTGATATTTTGCACCCTATTGCCCAAACAATCAATTCTTTGATGCAATTCGACCTTTCAGTTGGTGTTGACGTAGGAGGAAGAAATTGA

Coding sequence (CDS)

ATGTGCCATTACCTAAAAAAAAaGCTCATTTATTGTGTTCTTAAATCCCTTCATATCCATAAGGATGCAAGATTCCAATTTGAAATTAAAACCCACCAACGTCTCATTGATATTTTGCACCCTATTGCCCAAACAATCAATTCTTTGATGCAATTCGACCTTTCAGTTGGTGTTGACGTAGGAGGAAGAAATTGA

Protein sequence

MCHYLKKKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDVGGRN*
Homology
[Close]
BLAST of Cucsa.059140 vs. Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-17
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQR+IDIL+P AQTI+SLMQ DL  GVDV
Sbjct: 134 KKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDV 187

[Close]
BLAST of Cucsa.059140 vs. Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-17
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK I+CVLKS H+HKDARF FEI+THQRLIDIL+P AQTI+SLMQ DL  GVDV
Sbjct: 140 KKRIFCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDV 193

[Close]
BLAST of Cucsa.059140 vs. Swiss-Prot
Match: RS10_GEOSM (30S ribosomal protein S10 OS=Geobacter sp. (strain M21) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-11
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 

Query: 11 YCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
          YCVL+  H+ K +R QFEI+TH+RLIDIL P  QT+++LM+ DLS GVDV
Sbjct: 49 YCVLRGPHVDKKSREQFEIRTHKRLIDILEPTQQTVDALMKLDLSAGVDV 98

[Close]
BLAST of Cucsa.059140 vs. Swiss-Prot
Match: RS10_GEODF (30S ribosomal protein S10 OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-11
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 

Query: 11 YCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
          YCVL+  H+ K +R QFEI+TH+RLIDIL P  QT+++LM+ DLS GVDV
Sbjct: 49 YCVLRGPHVDKKSREQFEIRTHKRLIDILEPTQQTVDALMKLDLSAGVDV 98

[Close]
BLAST of Cucsa.059140 vs. Swiss-Prot
Match: RS10_GEOBB (30S ribosomal protein S10 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-11
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 

Query: 11 YCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
          YCVL+  H+ K +R QFEI+TH+RLIDIL P  QT+++LM+ DLS GVDV
Sbjct: 49 YCVLRGPHVDKKSREQFEIRTHKRLIDILEPTQQTVDALMKLDLSAGVDV 98

[Close]
BLAST of Cucsa.059140 vs. TrEMBL
Match: A0A103Y4F5_CYNCS (Ribosomal protein S10 OS=Cynara cardunculus var. scolymus GN=Ccrd_019383 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 103 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 156

[Close]
BLAST of Cucsa.059140 vs. TrEMBL
Match: A0A0J8CLK9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g090080 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 138 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 191

[Close]
BLAST of Cucsa.059140 vs. TrEMBL
Match: A0A0K9PMV9_ZOSMR (30S ribosomal protein S10-like OS=Zostera marina GN=ZOSMA_1G03910 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-16
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           K+ IYCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 143 KRRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 196

[Close]
BLAST of Cucsa.059140 vs. TrEMBL
Match: A0A165YZ48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013223 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-16
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQRLIDIL+P AQTI+SLMQ DL  GVDV
Sbjct: 127 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDV 180

[Close]
BLAST of Cucsa.059140 vs. TrEMBL
Match: C6T2U8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-16
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQRLIDIL+P AQTI+SLMQ DL  GVDV
Sbjct: 148 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDV 201

[Close]
BLAST of Cucsa.059140 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 89.7 bits (221), Expect = 7.0e-19
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQR+IDIL+P AQTI+SLMQ DL  GVDV
Sbjct: 134 KKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDV 187

[Close]
BLAST of Cucsa.059140 vs. NCBI nr
Match: gi|976916841|gb|KVI02337.1| (Ribosomal protein S10 [Cynara cardunculus var. scolymus])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 103 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 156

[Close]
BLAST of Cucsa.059140 vs. NCBI nr
Match: gi|729391413|ref|XP_010552371.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Tarenaya hassleriana])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 137 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 190

[Close]
BLAST of Cucsa.059140 vs. NCBI nr
Match: gi|731330017|ref|XP_010675901.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           KK IYCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 138 KKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 191

[Close]
BLAST of Cucsa.059140 vs. NCBI nr
Match: gi|901816099|gb|KMZ70408.1| (30S ribosomal protein S10-like [Zostera marina])

HSP 1 Score: 91.7 bits (226), Expect = 5.2e-16
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           K+ IYCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 143 KRRIYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 196

[Close]
BLAST of Cucsa.059140 vs. NCBI nr
Match: gi|743868803|ref|XP_010905666.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Elaeis guineensis])

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-16
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 7   KKLIYCVLKSLHIHKDARFQFEIKTHQRLIDILHPIAQTINSLMQFDLSVGVDV 61
           K+ +YCVLKS H+HKDARF FEI+THQRLIDILHP AQTI+SLMQ DL  GVDV
Sbjct: 142 KRRVYCVLKSPHVHKDARFHFEIRTHQRLIDILHPTAQTIDSLMQLDLPAGVDV 195

The following BLAST results are available for this feature:
BLAST of Cucsa.059140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR10_ARATH1.2e-1777.7830S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 S... [more]
RR10_MESCR2.1e-1777.7830S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS... [more]
RS10_GEOSM2.3e-1162.0030S ribosomal protein S10 OS=Geobacter sp. (strain M21) GN=rpsJ PE=3 SV=1[more]
RS10_GEODF2.3e-1162.0030S ribosomal protein S10 OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / ... [more]
RS10_GEOBB2.3e-1162.0030S ribosomal protein S10 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 ... [more]
BLAST of Cucsa.059140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A103Y4F5_CYNCS1.6e-1681.48Ribosomal protein S10 OS=Cynara cardunculus var. scolymus GN=Ccrd_019383 PE=3 SV... [more]
A0A0J8CLK9_BETVU1.6e-1681.48Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g090080 PE=3 S... [more]
A0A0K9PMV9_ZOSMR3.6e-1679.6330S ribosomal protein S10-like OS=Zostera marina GN=ZOSMA_1G03910 PE=3 SV=1[more]
A0A165YZ48_DAUCA8.1e-1679.63Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013223 PE=4 SV=1[more]
C6T2U8_SOYBN8.1e-1679.63Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of Cucsa.059140 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13120.17.0e-1977.78 Ribosomal protein S10p/S20e family protein[more]
BLAST of Cucsa.059140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|976916841|gb|KVI02337.1|2.3e-1681.48Ribosomal protein S10 [Cynara cardunculus var. scolymus][more]
gi|729391413|ref|XP_010552371.1|2.3e-1681.48PREDICTED: 30S ribosomal protein S10, chloroplastic [Tarenaya hassleriana][more]
gi|731330017|ref|XP_010675901.1|2.3e-1681.48PREDICTED: 30S ribosomal protein S10, chloroplastic [Beta vulgaris subsp. vulgar... [more]
gi|901816099|gb|KMZ70408.1|5.2e-1679.6330S ribosomal protein S10-like [Zostera marina][more]
gi|743868803|ref|XP_010905666.1|6.8e-1677.78PREDICTED: 30S ribosomal protein S10, chloroplastic [Elaeis guineensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_S10
IPR027486Ribosomal_S10_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.059140.1Cucsa.059140.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 7..60
score: 3.3
IPR027486Ribosomal protein S10 domainGENE3DG3DSA:3.30.70.600coord: 6..60
score: 4.6
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 6..60
score: 1.2
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 3..63
score: 0.
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 6..60
score: 1.44

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.059140Wild cucumber (PI 183967)cgycpiB043
Cucsa.059140Cucumber (Chinese Long) v2cgycuB042
Cucsa.059140Melon (DHL92) v3.5.1cgymeB047
Cucsa.059140Cucumber (Chinese Long) v3cgycucB045