Cucsa.054660 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGATTCTTTGGTTGATGCTGATAAATTTGGGTTCTTTGTGGGTTGCATGGGTGGAGGCTCATTATTCTAAAGGGGAGATCGTTGTAGTAGATCGATGCTGGGGTTGGTCGGTCTTAGTGTCTTCGTGCTATCTTACGTAAGTGGGATAATCTAAAAGAACATGTCAGGATGAAGGTGGGAGATGATAGGCGTTGCAGTGTGTAGCTGGATCCATGGTTACAAGCAGTCTTATCCTTTAGCAGGTTAATAAGAGGGTGATTTATGATGCTGTGAGTCGGCGGGAGGCTGAGTTCATTGGTCCGGATGGGGATTGGAGGTGACCGCTGATTTCTGTGGATTTGATTTATTTTTGGGATAGGATTCAGggTGTTAGTCTGTGTCCTAGTGTTGTGGATAGGTGGATTTGGATTCCTAGTCACCATGATGATTTTTCGATTGCTAATGTGTGAGATACCATTCGTCCTTGTAGTGTTAGGGTTCGTTGGTCGAGTTTACTGTGGGGTGGGAGGAATGTTCCCAAGCATTCCTTTTGAGATTGGTTGGCCAGCAAAGACAAATTGCATACTAAAGATAGGTTAAGTTGGTGGGACAGGTCGGTTCCTTTGTCTTGGATTCTTTGTGGGGGgAGTTGTAAGTCTCATGATCATTTGTTTTTTtCGTGTCCTTTTTGGTGTGAAATTTGGTCTAGGGTCCTTCAGGTTATAGCTTCCTCTCACAGGATTGGGTATTGGGGGGTTGAGTTGTCTTGGATTTGTCATCAGAGTATTGGGAAGGGTGTGAGGAGGAAGTTGTGGCGTGCTCTCTAGTGTGCTACGATTTACTTTATTTGGAAGGAGCATAATTATCGTCTCCATGGTGGTAAGGCTCGTGAGCCTATGGTTCTGTTTCAGCTTATCCATTTTTGTCTTTGTGCTCGTGCTGCTTCTTGGTATGAGAATGCTCATGATCTTATTTAG atgaagattctttggttgatgctgataaatttgggttctttgtgggttgcatgggtggaggctcattattctaaaggggagatcgttgtagtagatcgatgctggggttggtcggtcttagtgtcttcgtgctatcttaccaaagacaaattgcatactaaagataggttaagttggtgggacaggtcggttcctttgtcttggattctttgtggggggagttgtaagtctcatgatcatttgtttttttcgtgtcctttttggtgtgaaatttggtctagggtccttcaggttatagcttcctctcacaggattgggtattggggggttgagttgtcttggatttgtcatcagagtattgggaagggttgtgctacgatttactttatttggaaggagcataattatcgtctccatggtggtaaggctcgtgagcctatggttctgtttcagcttatccATTTTTGTCTTTGTGCTCGTGCTGCTTCTTGGTATGAGAATGCTCATGATCTTATTTAG ATGAAGATTCTTTGGTTGATGCTGATAAATTTGGGTTCTTTGTGGGTTGCATGGGTGGAGGCTCATTATTCTAAAGGGGAGATCGTTGTAGTAGATCGATGCTGGGGTTGGTCGGTCTTAGTGTCTTCGTGCTATCTTACCAAAGACAAATTGCATACTAAAGATAGGTTAAGTTGGTGGGACAGGTCGGTTCCTTTGTCTTGGATTCTTTGTGGGGGgAGTTGTAAGTCTCATGATCATTTGTTTTTTtCGTGTCCTTTTTGGTGTGAAATTTGGTCTAGGGTCCTTCAGGTTATAGCTTCCTCTCACAGGATTGGGTATTGGGGGGTTGAGTTGTCTTGGATTTGTCATCAGAGTATTGGGAAGGGTTGTGCTACGATTTACTTTATTTGGAAGGAGCATAATTATCGTCTCCATGGTGGTAAGGCTCGTGAGCCTATGGTTCTGTTTCAGCTTATCCATTTTTGTCTTTGTGCTCGTGCTGCTTCTTGGTATGAGAATGCTCATGATCTTATTTAG MKILWLMLINLGSLWVAWVEAHYSKGEIVVVDRCWGWSVLVSSCYLTKDKLHTKDRLSWWDRSVPLSWILCGGSCKSHDHLFFSCPFWCEIWSRVLQVIASSHRIGYWGVELSWICHQSIGKGCATIYFIWKEHNYRLHGGKAREPMVLFQLIHFCLCARAASWYENAHDLI*
BLAST of Cucsa.054660 vs. TrEMBL
Match: Q9XIH8_ARATH (Putative non-LTR retrolelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g16110 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 7.9e-10 Identity = 40/120 (33.33%), Postives = 60/120 (50.00%), Query Frame = 1
BLAST of Cucsa.054660 vs. TrEMBL
Match: A0A078J4I0_BRANA (BnaAnng14890D protein OS=Brassica napus GN=BnaAnng14890D PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.0e-09 Identity = 49/155 (31.61%), Postives = 68/155 (43.87%), Query Frame = 1
BLAST of Cucsa.054660 vs. TrEMBL
Match: Q9SY58_ARATH (F14N23.4 OS=Arabidopsis thaliana PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09 Identity = 45/158 (28.48%), Postives = 70/158 (44.30%), Query Frame = 1
BLAST of Cucsa.054660 vs. TrEMBL
Match: Q56W17_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 3.9e-09 Identity = 36/117 (30.77%), Postives = 58/117 (49.57%), Query Frame = 1
BLAST of Cucsa.054660 vs. TrEMBL
Match: A0A078HNT1_BRANA (BnaC01g34830D protein OS=Brassica napus GN=BnaC01g34830D PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08 Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 1
BLAST of Cucsa.054660 vs. TAIR10
Match: AT5G18880.1 (AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein) HSP 1 Score: 62.0 bits (149), Expect = 4.2e-10 Identity = 33/99 (33.33%), Postives = 44/99 (44.44%), Query Frame = 1
BLAST of Cucsa.054660 vs. TAIR10
Match: AT1G45063.1 (AT1G45063.1 copper ion binding;electron carriers) HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08 Identity = 34/110 (30.91%), Postives = 51/110 (46.36%), Query Frame = 1
BLAST of Cucsa.054660 vs. TAIR10
Match: AT4G05095.1 (AT4G05095.1 BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1)) HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07 Identity = 30/110 (27.27%), Postives = 49/110 (44.55%), Query Frame = 1
BLAST of Cucsa.054660 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]) HSP 1 Score: 173.7 bits (439), Expect = 2.8e-40 Identity = 89/179 (49.72%), Postives = 111/179 (62.01%), Query Frame = 1
BLAST of Cucsa.054660 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]) HSP 1 Score: 46.6 bits (109), Expect = 5.1e-02 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1
HSP 2 Score: 98.6 bits (244), Expect = 1.1e-17 Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1
BLAST of Cucsa.054660 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 46.6 bits (109), Expect = 5.1e-02 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1
HSP 2 Score: 86.3 bits (212), Expect = 5.8e-14 Identity = 66/187 (35.29%), Postives = 88/187 (47.06%), Query Frame = 1
BLAST of Cucsa.054660 vs. NCBI nr
Match: gi|685297015|ref|XP_009139329.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]) HSP 1 Score: 73.9 bits (180), Expect = 3.0e-10 Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1
BLAST of Cucsa.054660 vs. NCBI nr
Match: gi|923854867|ref|XP_013704732.1| (PREDICTED: uncharacterized protein LOC106408523 [Brassica napus]) HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10 Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|