Cucsa.054250 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.054250
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00582 : 573913 .. 574354 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGGTTAGGTAAGCCGGGTTGATCAGATTACCGGTTTTTTTGAAGACCCCTAGTCGTCAACCATGTACCACTAAACCAGTCAATGGAGCTCTTCTCCATCTCGAAGCTCGTTGGTGGCGTCGTTGTTTGTGTTTCTCTTTGTTCATTTGAGCGTCGTAGACCTCTAGATCCATCTCTCCGTTGTCTTTGTCTCGATCCTGTCCAAATTGTCTCTTTATTCGTTCGTGAGTCGTAAACCACCAATCTTGTCCAAATCCGTATGTTCATTTTGCTAGTCTATAAGTCTGCTCTGACTGGTCATCTCTCCATTCGCTTAGCACAGTCGCACGTTGTAAACCACTGATCCAATTTGTTTGTTTTCTTTGATCACACATCTCTCTATTCGTCTCTTTGTTCATTTCGCATCAACCATGTTCTTGAGAAGACGAATCGATGGTTGCA

mRNA sequence

ttgggttaggtaagccgggttgatcagattaccggtttttttgaaGACCCCTAGTCGTCAACCATGTACCACTAAACCAGTCAATGGAGCTCTTCTCCATCTCGAAGCTCGTTGGTGGCGTCGTTGTTTGTGTTTCTCTTTGTTCATTTGAGCGTCGTAGACCTCTAGATCCATCTCTCCGTTGTCTTTGTCTCGATCCTGTCCAAATTGTCTCTTTATTCGTTCGTGAGTCGTAAACCACCAATCTTGTCCAAATCCGTATGTTCATTTTGCTAGTCTATAAGTCTGCTCTGACTGGTCATCTCTCCATTCGCTTAGCACAGTCGCACGTTGTAAACCACTGATCCAATTTGTTTGTTTTCTTTGATCACACATCTCTCTATTCGTCTCTTTGTTCATTTCGCATCAACCATGTTCTTGAGAAGACGAATCGATGGTTGCA

Coding sequence (CDS)

ATGGAGCTCTTCTCCATCTCGAAGCTCGTTGGTGGCGTCGTTGTTTGTGTTTCTCTTTGTTCATTTGAGCGTCGTAGACCTCTAGATCCATCTCTCCGTTGTCTTTGTCTCGATCCTGTCCAAATTGTCTCTTTATTCGTTCGTGAGTCGTAA

Protein sequence

MELFSISKLVGGVVVCVSLCSFERRRPLDPSLRCLCLDPVQIVSLFVRES*
Homology
[Close]
BLAST of Cucsa.054250 vs. TrEMBL
Match: A0A0A0LBX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588510 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 1  MELFSISKLVGGVVVCVSLCSFERRRPLDPSLRCLCLDPVQIVSLFVR 49
          MELFSISKLVGGVVVCVSLCSFERRRPLDPSLRCLCLDPVQIVSLFVR
Sbjct: 1  MELFSISKLVGGVVVCVSLCSFERRRPLDPSLRCLCLDPVQIVSLFVR 48

[Close]
BLAST of Cucsa.054250 vs. NCBI nr
Match: gi|700203059|gb|KGN58192.1| (hypothetical protein Csa_3G588510 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

Query: 1  MELFSISKLVGGVVVCVSLCSFERRRPLDPSLRCLCLDPVQIVSLFVR 49
          MELFSISKLVGGVVVCVSLCSFERRRPLDPSLRCLCLDPVQIVSLFVR
Sbjct: 1  MELFSISKLVGGVVVCVSLCSFERRRPLDPSLRCLCLDPVQIVSLFVR 48

The following BLAST results are available for this feature:
BLAST of Cucsa.054250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBX1_CUCSA1.8e-18100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588510 PE=4 SV=1[more]
BLAST of Cucsa.054250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203059|gb|KGN58192.1|2.6e-18100.00hypothetical protein Csa_3G588510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.054250.1Cucsa.054250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.054250Csa3G588510Cucumber (Chinese Long) v2cgycuB038
Cucsa.054250CsaV3_3G027190Cucumber (Chinese Long) v3cgycucB040
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.054250Melon (DHL92) v3.6.1cgymedB037
Cucsa.054250Silver-seed gourdcarcgyB0425
Cucsa.054250Silver-seed gourdcarcgyB0500
Cucsa.054250Watermelon (97103) v2cgywmbB041
Cucsa.054250Wax gourdcgywgoB043
Cucsa.054250Cucurbita maxima (Rimu)cgycmaB0065
Cucsa.054250Cucurbita maxima (Rimu)cgycmaB0066
Cucsa.054250Cucurbita moschata (Rifu)cgycmoB0061
Cucsa.054250Cucurbita moschata (Rifu)cgycmoB0062
Cucsa.054250Wild cucumber (PI 183967)cgycpiB039
Cucsa.054250Melon (DHL92) v3.5.1cgymeB037
Cucsa.054250Watermelon (Charleston Gray)cgywcgB043
Cucsa.054250Watermelon (97103) v1cgywmB041
Cucsa.054250Cucurbita pepo (Zucchini)cgycpeB0062
Cucsa.054250Cucurbita pepo (Zucchini)cgycpeB0063
Cucsa.054250Bottle gourd (USVL1VR-Ls)cgylsiB042