Cucsa.040610 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.040610
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrotransposon protein
Locationscaffold00529 : 16922 .. 18669 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAACTATTTTACGTCACTTTACCCTCGTGTTGTTGGCTGTGTTACAACTGCACAATGAGTTGTTGAAGAAACCACAATCAGTAACTAAAACATGCACCGATGCATGATGGAGGTGCTTCAAGGTTCGCATATTCTTCAATTTCGTTACTTATGAATCACGAAGTCCAACTATTTGACTGCACTATGTTTCAATATGCATAACTGCCTTGGAGCACTGGATGGGACGTACATCAAGGTGAATGTGCCACAAGACGATAGGCCTAGATATAGAACACGTAAGGAGGAAGTTGCCACAAACATCCTTGGTGTGTGTGACACGAAAGGTAACTTCATGTTCGTCTTGGTTGGCTGGGAAGGGTTCGTAGCTGATTCGCCCATTCTTAGAGATGCTATTGCACGACCAAACGACCTGTAGATTCCTAAGGGTAATAAAAAATTGTATGCCTCCAACAACTATTACCTACTACGTAAATCAAATTAGTTAGATCTGACGCATTCATAACAAGTTATTACTATCTATGCCATGCGGGGTATCCCAACATGAAGGAATTTTTGTCTCCCTATAGAGAACAAACATACCACTTGTAAGAGTGGCAAGGAGCGGAAAATGCACCTACCATTGCGAAAGAGCACTTCAACACGAAACATTCCTGAGCACGAAATTTTATTGAAGGGGCATTTAGTGTGTTGAAGGGTTGATGGGTAATACTTCGCGACAAGTCGTACTACCCCGTGCAAGTTCAATGTCGAACCATTCTAGCATGTTGCCTACTACACAATCTCAACAATCGCGAGATGATGAATGTCAATTTTGTTGGCGACGTGGATGAGGGAGACTCCACCTAAGCCACGACCGGATGTGACGACATTCAATTCATTGAGAACTCAAATGAATGGACGCAATAGAGGGATGATTTGGCCGTTGAGATGTTCAATCAATAGCAGTTGCGTAATCAATAGACTATGTATCAATTTAGTATTCTTGTATTTGTTTTAAGTTGGTATTAGGTGCGTCTTCTTGTATAGTTTAATGTATGCATGCATGAATAAAATGAATGTAATTGTCTCCCTTCACGCAATAGACGCTATAAATTGATTAAATTTTTTTTCCCCTTTGTATGTATTGAAGTTACTGATTTCTATGTCGTCATTTTAATTGTTAGTATGGCAAGTTCGTCACGTGCACCTAAGCATGTGTGGGTGAAGGAGGAGGAGGAAACCCTCGTGGAGTGTATGGTGGAGTTGGTGTCTGCTGGTGGATGGAAGTCTGACAATGGCACGTTCAGATCGAGCATCTGACATAACTTCTTTGAATGATGGCGGCGAAGTTGCCGAAATTCAATGTTCATGTGACTACAGTTATTGACTGTCACATAAAGGCGTCGAAGCGCTCATACCAGGCAATCACAGAAATGCGCAGCCCGTCCTGCAGCGGGTTCGGTTGGAATGACGAGGCCAAGTGCATTGCTGTTGAGAAGAAATTGTTTGACAGCTGGGTCAGGATATGCAAAAAGTATAACTGTACACTGATATAATTTTACTTCAATATGAAACAAGTCTTTTTTTTTTTACATCATGCAGAGTCATCCTGCAGCCAAGGGCCTGCTGAATAAGTCACTTTCATATCACGACAAATTGTCGTATGTCTTTGAAAAAGATAGGGCAATAGAAGCTTGTGCGAAGACCTTTGCCGACATTGGATCGAACATTCCTAGCGGGTTCGAGGAATTTGCACACGTGGTCTGA

mRNA sequence

ggaaactattttacgtcactttaccctcgtgttgttggctgtgttacaactgcacaatgagttgttgaagaaaccacaatcatccaactatttgactgcactatgtttcaatatgcataactgccttggagcactggatgggacgtacatcaaggtgaatgtgccacaagacgataggcctagatatagaacacgtaaggaggaagttgccacaaacatccttggtgtgtgtgacacgaaaggtaacttcatgttcgtcttggttggctgggaagggttcgtagctgattcgcccattcttagagatgctattgcacgaccaaacgacctttattactatctatgccatgcggggtatcccaacatgaaggaatttttgtctccctatagagaacaaacataccacttcgggttcggttggaatgacgaggccaagtgcattgctgttgagaagaaattgtttgacagctggagtcatcctgcagccaagggcctgctgaataagtcactttcatatcacgacaaattgtcgtatgtctttgaaaaagatagggcaatagaagcttgtgcgaagacctttgccgacattggatcgaacattcctagcgggttcgaggaatttgcacacgtggtctga

Coding sequence (CDS)

GGAAACTATTTTACGTCACTTTACCCTCGTGTTGTTGGCTGTGTTACAACTGCACAATGAGTTGTTGAAGAAACCACAATCATCCAACTATTTGACTGCACTATGTTTCAATATGCATAACTGCCTTGGAGCACTGGATGGGACGTACATCAAGGTGAATGTGCCACAAGACGATAGGCCTAGATATAGAACACGTAAGGAGGAAGTTGCCACAAACATCCTTGGTGTGTGTGACACGAAAGGTAACTTCATGTTCGTCTTGGTTGGCTGGGAAGGGTTCGTAGCTGATTCGCCCATTCTTAGAGATGCTATTGCACGACCAAACGACCTTTATTACTATCTATGCCATGCGGGGTATCCCAACATGAAGGAATTTTTGTCTCCCTATAGAGAACAAACATACCACTTCGGGTTCGGTTGGAATGACGAGGCCAAGTGCATTGCTGTTGAGAAGAAATTGTTTGACAGCTGGAGTCATCCTGCAGCCAAGGGCCTGCTGAATAAGTCACTTTCATATCACGACAAATTGTCGTATGTCTTTGAAAAAGATAGGGCAATAGAAGCTTGTGCGAAGACCTTTGCCGACATTGGATCGAACATTCCTAGCGGGTTCGAGGAATTTGCACACGTGGTCTGA

Protein sequence

ETILRHFTLVLLAVLQLHNELLKKPQSSNYLTALCFNMHNCLGALDGTYIKVNVPQDDRPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDLYYYLCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKSLSYHDKLSYVFEKDRAIEACAKTFADIGSNIPSGFEEFAHVV*
Homology
[Close]
BLAST of Cucsa.040610 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.8e-43
Identity = 99/176 (56.25%), Postives = 120/176 (68.18%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQS-SNYLTALCFN-MHNCLGALDGTYIKVNVPQDD 60
           ETI RHF +VLLAV++LH ELLKKPQ   N  T   +    NCLGALDGTYIKVNVP  D
Sbjct: 98  ETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASD 157

Query: 61  RPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----YYY 120
           R RYRTRK EVATN+LGVCDTKG+F++VL GWEG  ADS ILRDA++RPN L     YYY
Sbjct: 158 RARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYY 217

Query: 121 LCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKS 170
           L   GYPN + FL+PYR Q YH    W       +  K+ F +  H +A+ ++ ++
Sbjct: 218 LVDVGYPNAEGFLAPYRGQRYHLQ-EWRGPENAPSTSKEFF-NMKHYSARNVIERA 271

[Close]
BLAST of Cucsa.040610 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 137 GFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKSLSYHDKLSYVFEKDRAIEACAKTFADI 196
           GFGWNDE KCI  EK++FD WSHPAAKGLLNKS  ++D+LSYVF KDRA    A++FADI
Sbjct: 445 GFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 504

Query: 197 GSNIPSGFE 206
           GSN P G++
Sbjct: 505 GSNDPPGYD 513


HSP 2 Score: 177.9 bits (450), Expect = 1.3e-41
Identity = 94/178 (52.81%), Postives = 120/178 (67.42%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKP----QSSNYLTALCFNMHNCLGALDGTYIKVNVPQ 60
           ET+ RHF +VLLAVL+L+ EL+K+P     + N     CF   NCLGALDGTYIKVNVP 
Sbjct: 70  ETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE--NCLGALDGTYIKVNVPA 129

Query: 61  DDRPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----Y 120
            DRP +RTRK E+ATN+LGVCD KG+F++VL GWEG  ADS ILRDAI++ N L     Y
Sbjct: 130 GDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGY 189

Query: 121 YYLCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKS 170
           YYLC AGYPN + FL+PY+ Q YH    W   A      K+ F +  H +A+ ++ ++
Sbjct: 190 YYLCDAGYPNAEGFLAPYKGQRYHLQ-EWRGAANAPTNAKEYF-NMKHSSARNVIERA 243

[Close]
BLAST of Cucsa.040610 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 137 GFGWNDEAKCIAVEKKLFDSW--SHPAAKGLLNKSLSYHDKLSYVFEKDRAIEACAKTFA 196
           GFGWNDE KCI  EK+LFD+W  S PAAKGLLN    Y+D+L+YVF +DRA    A+TFA
Sbjct: 408 GFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFA 467

Query: 197 DIGSNIPSG 204
           D+GSN P G
Sbjct: 468 DVGSNEPGG 476


HSP 2 Score: 155.6 bits (392), Expect = 6.7e-35
Identity = 87/175 (49.71%), Postives = 108/175 (61.71%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQ--SSNYLTALCFNMHNCLGALDGTYIKVNVPQDD 60
           ETI RHF  VL AV++L   LLKKP+  S N          NCLGALDGTYIKVNV + D
Sbjct: 129 ETISRHFNAVLNAVIRLQGVLLKKPEPVSENSTDERWKWFKNCLGALDGTYIKVNVREGD 188

Query: 61  RPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----YYY 120
           +PRYRTRK E+ATN+LGVC     F++VL GWEG  +DS +LRDA++R N L     YYY
Sbjct: 189 KPRYRTRKNEIATNVLGVCSQDMQFIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPHGYYY 248

Query: 121 LCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNK 169
           L   GY N K FL+PYR Q YH    W +       E+  F +  H AA+ ++ +
Sbjct: 249 LVDVGYTNGKGFLAPYRGQRYHLN-DWREGHMPTTHEE--FFNMKHSAARNVIER 300

[Close]
BLAST of Cucsa.040610 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 29.6 bits (65), Expect = 5.5e+03
Identity = 18/38 (47.37%), Postives = 20/38 (52.63%), Query Frame = 1 

Query: 159 HPAAKGLLNKSLSYHDKLSYVFEKDRAIEACAKTFADI 197
           H  A GL  K   + D LS VF KDRA    A + ADI
Sbjct: 408 HKDANGLRLKPFPHFDDLSLVFGKDRANGKGAMSAADI 445


HSP 2 Score: 142.5 bits (358), Expect = 5.9e-31
Identity = 83/175 (47.43%), Postives = 104/175 (59.43%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQS--SNYLTALCFNMHNCLGALDGTYIKVNVPQDD 60
           E+I RHF  VL AVL+L   L +KP+   +N          NCLGALDGTYI+V VP  D
Sbjct: 136 ESISRHFHNVLAAVLKLQEHLFRKPEPIPTNSTDNQWKWFKNCLGALDGTYIRVKVPSAD 195

Query: 61  RPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----YYY 120
           +PRYRTRK  +ATN+LGVC     F+FVL GWEG VAD  +LRDA+ R N L      YY
Sbjct: 196 KPRYRTRKGNIATNMLGVCTPDMQFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNGCYY 255

Query: 121 LCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNK 169
           L  AGY N + FL+PYR Q YH    W       + E+  F +  H AA+ ++ +
Sbjct: 256 LVDAGYTNCEGFLAPYRGQRYHLN-EWRQGHDPSSHEE--FFNMKHAAARNVIER 307

[Close]
BLAST of Cucsa.040610 vs. TrEMBL
Match: A0A061GDT4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-30
Identity = 76/142 (53.52%), Postives = 92/142 (64.79%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQS--SNYLTALCFNMHNCLGALDGTYIKVNVPQDD 60
           E+I RHF  VL AVL+L   L +KP+   +N          NCLGALDGTYI+V VP  D
Sbjct: 136 ESISRHFHNVLAAVLKLQEYLFRKPEPIPTNSTDNRWKWFKNCLGALDGTYIRVKVPSAD 195

Query: 61  RPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----YYY 120
           +PRYRTRK ++ATN+LGVC     F+FVL GWEG VAD  +LRDA+ R N L      YY
Sbjct: 196 KPRYRTRKGDIATNMLGVCTLDMQFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNGCYY 255

Query: 121 LCHAGYPNMKEFLSPYREQTYH 136
           L  AGY N + FL+P+R Q YH
Sbjct: 256 LVDAGYSNCEGFLAPFRGQRYH 277

[Close]
BLAST of Cucsa.040610 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 43/134 (32.09%), Postives = 66/134 (49.25%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQSSNYLTALCFNMHNCLGALDGTYIKVNVPQDDRP 60
           ETI RHF  VL AV+ +  +  +   +S+ L        +C+G +D  +I V V  D++ 
Sbjct: 103 ETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQG 162

Query: 61  RYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDLY-----YYLC 120
            +R     +  N+L        F +VL GWEG  +D  +L  A+ R N L      YY+ 
Sbjct: 163 PFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIV 222

Query: 121 HAGYPNMKEFLSPY 130
              YPN+  F++PY
Sbjct: 223 DNKYPNLPGFIAPY 236

[Close]
BLAST of Cucsa.040610 vs. TAIR10
Match: AT5G28950.1 (AT5G28950.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1 

Query: 25  PQSSNYLTALCFNMHNCLGALDGTYIKVNVPQDDRPRYRTRKEEVATNILGVCDTKGNFM 84
           P+     T L     +C+GA+D T+I   V Q   P +R RK +++ N+L  C+    FM
Sbjct: 9   PRKIRESTRLYPYFKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFM 68

Query: 85  FVLVGWEGFVADSPILRDAIAR 107
           +VL GWEG   DS +L DA+ R
Sbjct: 69  YVLSGWEGSAHDSKVLNDALTR 90

[Close]
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 1.7e-44
Identity = 99/177 (55.93%), Postives = 123/177 (69.49%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQS-SNYLT--ALCFNMHNCLGALDGTYIKVNVPQD 60
           ET+ RHF +VLLAV++LH ELLKKPQ   N  T     + + NCLGALDGTYIKVNVP  
Sbjct: 37  ETMSRHFNMVLLAVIRLHEELLKKPQPVPNEYTDKKWSYVLQNCLGALDGTYIKVNVPAS 96

Query: 61  DRPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----YY 120
           DR RYRTRK EVATN+LGVCDTKG+F++VLVGWEG  ADS ILRDA++RPN+L     YY
Sbjct: 97  DRARYRTRKGEVATNVLGVCDTKGDFVYVLVGWEGSAADSRILRDALSRPNELKVPKGYY 156

Query: 121 YLCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKS 170
           YL   GYPN + FL+PYR Q YH    W       +  K+ F +  H +A+ ++ ++
Sbjct: 157 YLVDVGYPNAEGFLAPYRGQRYHLQ-EWRGPENAPSTSKEFF-NMKHSSARNVIERA 211

[Close]
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|659118458|ref|XP_008459130.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 6.6e-44
Identity = 100/176 (56.82%), Postives = 120/176 (68.18%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQS-SNYLTALCFN-MHNCLGALDGTYIKVNVPQDD 60
           ETI RHF +VLLAV++LH ELLKKPQ   N  T   +    NCLGALDGTYIKVNVP  D
Sbjct: 56  ETISRHFNMVLLAVIRLHQELLKKPQPVPNDCTDQRWRWFENCLGALDGTYIKVNVPVSD 115

Query: 61  RPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----YYY 120
           R RYRTRK EVATN+LGVCDTKG+F++VL GWEG  ADS ILRDA++RPN L     YYY
Sbjct: 116 RARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNGLKVPKGYYY 175

Query: 121 LCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKS 170
           L   GYPN + FL+PYR Q YH    W       +  KK F +  H +A+ ++ ++
Sbjct: 176 LVDVGYPNAEGFLAPYRGQRYHLQ-EWRGPENAPSTSKKFF-NMKHSSARNVIERA 229

[Close]
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 98/179 (54.75%), Postives = 121/179 (67.60%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQSSNYLTALCFN-----MHNCLGALDGTYIKVNVP 60
           ET+ RHF +VLLA  +LH+ELLKKPQ    +T  C +       NCLGALDGTYIKVNV 
Sbjct: 56  ETVSRHFNIVLLAGFRLHDELLKKPQP---VTNSCTDPRWKWFENCLGALDGTYIKVNVS 115

Query: 61  QDDRPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL----- 120
             DRPRYRTRK EVATN+LG CDTKG+F+FVL GWEG  ADS ILRDAI+R N L     
Sbjct: 116 ATDRPRYRTRKGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKG 175

Query: 121 YYYLCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKS 170
           YYYLC AGYPN + FL+PYR + YH    W  E+      ++ F +  H +A+ ++ ++
Sbjct: 176 YYYLCDAGYPNAEGFLAPYRGERYHLS-EWRGESNAPTTAREFF-NMKHSSARNVIERA 229

[Close]
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 184.1 bits (466), Expect = 2.5e-43
Identity = 99/176 (56.25%), Postives = 120/176 (68.18%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKPQS-SNYLTALCFN-MHNCLGALDGTYIKVNVPQDD 60
           ETI RHF +VLLAV++LH ELLKKPQ   N  T   +    NCLGALDGTYIKVNVP  D
Sbjct: 98  ETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASD 157

Query: 61  RPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----YYY 120
           R RYRTRK EVATN+LGVCDTKG+F++VL GWEG  ADS ILRDA++RPN L     YYY
Sbjct: 158 RARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYY 217

Query: 121 LCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKS 170
           L   GYPN + FL+PYR Q YH    W       +  K+ F +  H +A+ ++ ++
Sbjct: 218 LVDVGYPNAEGFLAPYRGQRYHLQ-EWRGPENAPSTSKEFF-NMKHYSARNVIERA 271

[Close]
BLAST of Cucsa.040610 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 137 GFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKSLSYHDKLSYVFEKDRAIEACAKTFADI 196
           GFGWNDE KCI  EK++FD WSHPAAKGLLNKS  ++D+LSYVF KDRA    A++FADI
Sbjct: 445 GFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 504

Query: 197 GSNIPSGFE 206
           GSN P G++
Sbjct: 505 GSNDPPGYD 513


HSP 2 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 94/178 (52.81%), Postives = 120/178 (67.42%), Query Frame = 1 

Query: 1   ETILRHFTLVLLAVLQLHNELLKKP----QSSNYLTALCFNMHNCLGALDGTYIKVNVPQ 60
           ET+ RHF +VLLAVL+L+ EL+K+P     + N     CF   NCLGALDGTYIKVNVP 
Sbjct: 70  ETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKCFE--NCLGALDGTYIKVNVPA 129

Query: 61  DDRPRYRTRKEEVATNILGVCDTKGNFMFVLVGWEGFVADSPILRDAIARPNDL-----Y 120
            DRP +RTRK E+ATN+LGVCD KG+F++VL GWEG  ADS ILRDAI++ N L     Y
Sbjct: 130 GDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGY 189

Query: 121 YYLCHAGYPNMKEFLSPYREQTYHFGFGWNDEAKCIAVEKKLFDSWSHPAAKGLLNKS 170
           YYLC AGYPN + FL+PY+ Q YH    W   A      K+ F +  H +A+ ++ ++
Sbjct: 190 YYLCDAGYPNAEGFLAPYKGQRYHLQ-EWRGAANAPTNAKEYF-NMKHSSARNVIERA 243

The following BLAST results are available for this feature:
BLAST of Cucsa.040610 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME1.8e-4356.25Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME1.0e-1968.12Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME3.1e-1663.77Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5BND9_VITVI5.5e+0347.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
A0A061GDT4_THECC3.8e-3053.52Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1[more]
BLAST of Cucsa.040610 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41980.11.7e-1332.09 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT5G28950.13.5e-1139.02 unknown protein[more]
BLAST of Cucsa.040610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114872|ref|XP_008457266.1|1.7e-4455.93PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659118458|ref|XP_008459130.1|6.6e-4456.82PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659111563|ref|XP_008455792.1|1.1e-4354.75PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|2.5e-4356.25retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136287|gb|ADN34114.1|1.5e-1968.12retrotransposon protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.040610.1Cucsa.040610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 45..131
score: 3.6
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..136
score: 6.7
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 1..136
score: 6.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.040610Bottle gourd (USVL1VR-Ls)cgylsiB013
Cucsa.040610Melon (DHL92) v3.6.1cgymedB015
Cucsa.040610Cucumber (Chinese Long) v3cgycucB016
Cucsa.040610Watermelon (97103) v2cgywmbB015
Cucsa.040610Wax gourdcgywgoB015
Cucsa.040610Wild cucumber (PI 183967)cgycpiB014
Cucsa.040610Cucumber (Chinese Long) v2cgycuB013
Cucsa.040610Watermelon (Charleston Gray)cgywcgB015
Cucsa.040610Watermelon (97103) v1cgywmB015