Cucsa.032750 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.032750
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent RNA helicase
Locationscaffold00429 : 2008791 .. 2009475 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAAAACAGAGCTGCGCTTCCCATTGCTTCATTAAGAGGTGATATGTTGCGTCTCCTGAAGGAGAATAATGTTCTTGTTGTTTGCGGGGATACAGGTTCTGGAAAGACAACTCAGGTTCATTTGTTTCAAGTGCAATTATTCCTATATTATTGTATTTTCTCTAAAGAAGAAAAAAAaTTAATGAATAGGTGATTTCACCAATACCTAGTTCATGAAATAGTACTTATTAACGGTATATGGGTAAGATTTGTAGGGATATTAGTTTGGGGTATTATGGGCAATTAGCTAGTGGTGTCTTGGTTTTAAATAAGAGGAGTTGTTCACCTTAGAGGATGTGAATCATTTCGGTAGGATTTTTCTTTGACGGAATTTGGGAAAGAGATTGCCCTCACGTAAGGCTATTTTTCTTTAAATTGTTTATTGATATTTTGGTGTTTCTTTTAAGTATTTTTGTTAGATAATATCCTAACATTATTTtCCCCTTTTAATGTGCTCTGCTCGACTGCATTAATAGCACATATACAAAATGTTTCTCCTAAGATCTTACCCTTATTTTTCTCTTGAAGATTTCTCTAACAATTGTTTTATGTAGGTCCCACAATTTATACTGGATGAGATGATCGAATCAGGATGTGGAGGACTGTGCAACATAGTATGCACACAACCAAGAAGAATAGCG

mRNA sequence

ATGTTGAAAAACAGAGCTGCGCTTCCCATTGCTTCATTAAGAGGTGATATGTTGCGTCTCCTGAAGGAGAATAATGTTCTTGTTGTTTGCGGGGATACAGGTTCTGGAAAGACAACTCAGGTCCCACAATTTATACTGGATGAGATGATCGAATCAGGATGTGGAGGACTGTGCAACATAGTATGCACACAACCAAGAAGAATAGCG

Coding sequence (CDS)

ATGTTGAAAAACAGAGCTGCGCTTCCCATTGCTTCATTAAGAGGTGATATGTTGCGTCTCCTGAAGGAGAATAATGTTCTTGTTGTTTGCGGGGATACAGGTTCTGGAAAGACAACTCAGGTCCCACAATTTATACTGGATGAGATGATCGAATCAGGATGTGGAGGACTGTGCAACATAGTATGCACACAACCAAGAAGAATAGCG

Protein sequence

MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNIVCTQPRRIA
Homology
[Close]
BLAST of Cucsa.032750 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-23
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK RAALPI+ ++ D+L+ LKE +VLVVCG+TGSGKTTQVPQFILD+MI+SG GG CNI
Sbjct: 590 MLKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYCNI 649

Query: 61  VCTQPRRI 69
           +CTQPR I
Sbjct: 650 ICTQPRAI 657

[Close]
BLAST of Cucsa.032750 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 8.0e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK R ALPI+ ++  +L+ LKE +VLVVCG+TGSGKTTQVPQFILD+MI+SG GG CNI
Sbjct: 607 MLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYCNI 666

Query: 61  VCTQPRRIA 70
           +CTQPRRIA
Sbjct: 667 ICTQPRRIA 675

[Close]
BLAST of Cucsa.032750 vs. Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UMAG_11114 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-15
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           M + R +LP AS   ++L L++ N V+++ G+TG GKTTQVPQFILDE IE+G G  CNI
Sbjct: 729 MDETRRSLPAASAAREILGLIRSNRVVIIAGETGCGKTTQVPQFILDEAIEAGRGSECNI 788

Query: 61  VCTQPRRIA 70
           V TQPRR++
Sbjct: 789 VVTQPRRVS 797

[Close]
BLAST of Cucsa.032750 vs. Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-13
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGG-LCN 60
           +LK R  LP+   R  ++  LK + V+VV G+TGSGK+TQVP F+L++++   CG   CN
Sbjct: 564 LLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLDECGARKCN 623

Query: 61  IVCTQPRRIA 70
           IVCTQPRRI+
Sbjct: 624 IVCTQPRRIS 633

[Close]
BLAST of Cucsa.032750 vs. Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.6e-13
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMI-ESGCGGLCN 60
           +L +R  LP+ +    +L  LK + V+VV G+TGSGK+TQVPQF+L++++   G  G CN
Sbjct: 559 LLNDREQLPVFARGNFILETLKRHRVIVVAGETGSGKSTQVPQFLLEDLLFNGGSPGKCN 618

Query: 61  IVCTQPRRIA 70
           IVCTQPRRI+
Sbjct: 619 IVCTQPRRIS 628

[Close]
BLAST of Cucsa.032750 vs. TrEMBL
Match: A0A0A0L6M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228870 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI
Sbjct: 50  MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 109

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 110 VCTQPRRIA 118

[Close]
BLAST of Cucsa.032750 vs. TrEMBL
Match: A0A061DXK0_THECC (ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-25
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK RAALPIA L+ D+L+LLKENNVLVVCG+TGSGKTTQVPQFILD+MIESG GG CNI
Sbjct: 607 MLKTRAALPIAGLKNDILQLLKENNVLVVCGETGSGKTTQVPQFILDDMIESGRGGHCNI 666

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 667 VCTQPRRIA 675

[Close]
BLAST of Cucsa.032750 vs. TrEMBL
Match: A0A061DYH6_THECC (ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-25
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK RAALPIA L+ D+L+LLKENNVLVVCG+TGSGKTTQVPQFILD+MIESG GG CNI
Sbjct: 607 MLKTRAALPIAGLKNDILQLLKENNVLVVCGETGSGKTTQVPQFILDDMIESGRGGHCNI 666

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 667 VCTQPRRIA 675

[Close]
BLAST of Cucsa.032750 vs. TrEMBL
Match: A0A061E4D8_THECC (ATP-dependent RNA helicase, putative isoform 4 OS=Theobroma cacao GN=TCM_006225 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-25
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK RAALPIA L+ D+L+LLKENNVLVVCG+TGSGKTTQVPQFILD+MIESG GG CNI
Sbjct: 141 MLKTRAALPIAGLKNDILQLLKENNVLVVCGETGSGKTTQVPQFILDDMIESGRGGHCNI 200

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 201 VCTQPRRIA 209

[Close]
BLAST of Cucsa.032750 vs. TrEMBL
Match: M5XY08_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.9e-25
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK RAALPIA L+GD+LRLL ENNVLVVCG+TGSGKTTQVPQFILD+MI+SG GG CNI
Sbjct: 575 MLKTRAALPIAGLKGDILRLLHENNVLVVCGETGSGKTTQVPQFILDDMIKSGHGGHCNI 634

Query: 61  VCTQPRRIA 70
           +CTQPRRIA
Sbjct: 635 ICTQPRRIA 643

[Close]
BLAST of Cucsa.032750 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK RAALPI+ ++ D+L+ LKE +VLVVCG+TGSGKTTQVPQFILD+MI+SG GG CNI
Sbjct: 590 MLKTRAALPISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYCNI 649

Query: 61  VCTQPRRI 69
           +CTQPR I
Sbjct: 650 ICTQPRAI 657

[Close]
BLAST of Cucsa.032750 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-24
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLK R ALPI+ ++  +L+ LKE +VLVVCG+TGSGKTTQVPQFILD+MI+SG GG CNI
Sbjct: 607 MLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYCNI 666

Query: 61  VCTQPRRIA 70
           +CTQPRRIA
Sbjct: 667 ICTQPRRIA 675

[Close]
BLAST of Cucsa.032750 vs. TAIR10
Match: AT5G04895.1 (AT5G04895.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-15
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           ML+ R  LP    +  +L+ +  N V+VV G+TG GKTTQ+PQ+IL+  IESG G  CNI
Sbjct: 253 MLEFRKTLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNI 312

Query: 61  VCTQPRRIA 70
           +CTQPRRI+
Sbjct: 313 ICTQPRRIS 321

[Close]
BLAST of Cucsa.032750 vs. TAIR10
Match: AT2G01130.1 (AT2G01130.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           ML +R +LP    R  +L  + +N V+V+ G+TG GKTTQ+PQFIL+  IE+  G   +I
Sbjct: 213 MLDSRTSLPAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFSSI 272

Query: 61  VCTQPRRIA 70
           +CTQPRRI+
Sbjct: 273 ICTQPRRIS 281

[Close]
BLAST of Cucsa.032750 vs. TAIR10
Match: AT2G35920.1 (AT2G35920.1 RNA helicase family protein)

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-14
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 

Query: 5   RAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNIVCTQ 64
           R  LP   ++ + L  + +N VLVV G+TG GKTTQ+PQFIL+E I S  G  CNI+CTQ
Sbjct: 225 REKLPAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICTQ 284

Query: 65  PRRIA 70
           PRRI+
Sbjct: 285 PRRIS 289

[Close]
BLAST of Cucsa.032750 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI
Sbjct: 632 MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 691

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 692 VCTQPRRIA 700

[Close]
BLAST of Cucsa.032750 vs. NCBI nr
Match: gi|700202477|gb|KGN57610.1| (hypothetical protein Csa_3G228870 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI
Sbjct: 50  MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 109

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 110 VCTQPRRIA 118

[Close]
BLAST of Cucsa.032750 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI
Sbjct: 478 MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 537

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 538 VCTQPRRIA 546

[Close]
BLAST of Cucsa.032750 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLKNRA LPIASLRGD+LRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI
Sbjct: 478 MLKNRAGLPIASLRGDILRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 537

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 538 VCTQPRRIA 546

[Close]
BLAST of Cucsa.032750 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 4.0e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 

Query: 1   MLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 60
           MLKNRA LPIASLRGD+LRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI
Sbjct: 632 MLKNRAGLPIASLRGDILRLLKENNVLVVCGDTGSGKTTQVPQFILDEMIESGCGGLCNI 691

Query: 61  VCTQPRRIA 70
           VCTQPRRIA
Sbjct: 692 VCTQPRRIA 700

The following BLAST results are available for this feature:
BLAST of Cucsa.032750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH4_ARATH8.0e-2373.53DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH7_ARATH8.0e-2372.46DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
YUM14_USTMA1.2e-1556.52Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis (strain 521 ... [more]
DHX29_MOUSE1.2e-1351.43ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=1 SV=1[more]
DHX29_XENLA2.6e-1351.43ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1[more]
BLAST of Cucsa.032750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6M0_CUCSA3.3e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228870 PE=4 SV=1[more]
A0A061DXK0_THECC4.6e-2585.51ATP-dependent RNA helicase, putative isoform 3 OS=Theobroma cacao GN=TCM_006225 ... [more]
A0A061DYH6_THECC4.6e-2585.51ATP-dependent RNA helicase, putative isoform 1 OS=Theobroma cacao GN=TCM_006225 ... [more]
A0A061E4D8_THECC4.6e-2585.51ATP-dependent RNA helicase, putative isoform 4 OS=Theobroma cacao GN=TCM_006225 ... [more]
M5XY08_PRUPE5.9e-2584.06Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000230mg PE=4 SV=1[more]
BLAST of Cucsa.032750 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G58050.14.5e-2473.53 RNA helicase family protein[more]
AT1G58060.14.5e-2472.46 RNA helicase family protein[more]
AT5G04895.12.2e-1553.62 DEA(D/H)-box RNA helicase family protein[more]
AT2G01130.11.9e-1449.28 DEA(D/H)-box RNA helicase family protein[more]
AT2G35920.11.9e-1455.38 RNA helicase family protein[more]
BLAST of Cucsa.032750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680313|ref|XP_011651287.1|4.7e-31100.00PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|700202477|gb|KGN57610.1|4.7e-31100.00hypothetical protein Csa_3G228870 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|4.7e-31100.00PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|4.0e-3097.10PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|4.0e-3097.10PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.032750.1Cucsa.032750.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 8..69
score: 1.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 11..49
score: 5.54
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 1..69
score: 4.1
NoneNo IPR availablePANTHERPTHR18934:SF145ATP-DEPENDENT RNA HELICASE DHX57-RELATEDcoord: 1..69
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.032750Cucumber (Chinese Long) v3cgycucB006
Cucsa.032750Watermelon (97103) v2cgywmbB003
Cucsa.032750Wax gourdcgywgoB003
Cucsa.032750Cucurbita maxima (Rimu)cgycmaB0007
Cucsa.032750Cucurbita maxima (Rimu)cgycmaB0012
Cucsa.032750Cucurbita moschata (Rifu)cgycmoB0006
Cucsa.032750Cucurbita moschata (Rifu)cgycmoB0012
Cucsa.032750Wild cucumber (PI 183967)cgycpiB003
Cucsa.032750Cucumber (Chinese Long) v2cgycuB003
Cucsa.032750Melon (DHL92) v3.5.1cgymeB002
Cucsa.032750Watermelon (Charleston Gray)cgywcgB003
Cucsa.032750Watermelon (97103) v1cgywmB002
Cucsa.032750Cucurbita pepo (Zucchini)cgycpeB0005
Cucsa.032750Cucurbita pepo (Zucchini)cgycpeB0007
Cucsa.032750Bottle gourd (USVL1VR-Ls)cgylsiB003
Cucsa.032750Melon (DHL92) v3.6.1cgymedB002
Cucsa.032750Silver-seed gourdcarcgyB0048
Cucsa.032750Silver-seed gourdcarcgyB0730