Cucsa.032710 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.032710
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent RNA helicase, putative
Locationscaffold00429 : 1985030 .. 1985497 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCTTCTGAATTCGAGTATGGAAGAGCGTTGGATAATGTATTGAAGGATGAAGCTCTGAGTTCTATGCAAGATGGAAATGTTGGGGTCAATCAATCAAACATGAGAAGTAGCTTGGATATTTCAGTGCATAGAAATGAATCTGCTAATGTAGATGAAAATGATTGGTCAACCTCAAAGGAGTTATCTGTAGATCTTATGTCTACACAAGAAATTGAATCAATCGTTGATGTAGATGGGAGGGCTTGCTCAGCCCCCAAGGAGACATCCGTGGATCTTTTGTCATCCCAAGGAAAGAATGACTCAGAAGAGCCAGAAGATGTGGAGATCGGTAATTTTTTTTtGGAAGATGTAGAAACAAATTCAGATGTAGCACAGGAATTACTAAAACTAAAGAAGAAAGAAAAGATGAAAGAACTTTCCAGTGGGAAGAATTCCGAGAAGTTGGATGGCATATGGAAGAAG

mRNA sequence

ATGCTGGCTTCTGAATTCGAGTATGGAAGAGCGTTGGATAATGTATTGAAGGATGAAGCTCTGAGTTCTATGCAAGATGGAAATGTTGGGGTCAATCAATCAAACATGAGAAGTAGCTTGGATATTTCAGTGCATAGAAATGAATCTGCTAATGTAGATGAAAATGATTGGTCAACCTCAAAGGAGTTATCTGTAGATCTTATGTCTACACAAGAAATTGAATCAATCGTTGATGTAGATGGGAGGGCTTGCTCAGCCCCCAAGGAGACATCCGTGGATCTTTTGTCATCCCAAGGAAAGAATGACTCAGAAGAGCCAGAAGATGTGGAGATCGGTAATTTTTTTTTGGAAGATGTAGAAACAAATTCAGATGTAGCACAGGAATTACTAAAACTAAAGAAGAAAGAAAAGATGAAAGAACTTTCCAGTGGGAAGAATTCCGAGAAGTTGGATGGCATATGGAAGAAG

Coding sequence (CDS)

ATGCTGGCTTCTGAATTCGAGTATGGAAGAGCGTTGGATAATGTATTGAAGGATGAAGCTCTGAGTTCTATGCAAGATGGAAATGTTGGGGTCAATCAATCAAACATGAGAAGTAGCTTGGATATTTCAGTGCATAGAAATGAATCTGCTAATGTAGATGAAAATGATTGGTCAACCTCAAAGGAGTTATCTGTAGATCTTATGTCTACACAAGAAATTGAATCAATCGTTGATGTAGATGGGAGGGCTTGCTCAGCCCCCAAGGAGACATCCGTGGATCTTTTGTCATCCCAAGGAAAGAATGACTCAGAAGAGCCAGAAGATGTGGAGATCGGTAATTTTTTTTtGGAAGATGTAGAAACAAATTCAGATGTAGCACAGGAATTACTAAAACTAAAGAAGAAAGAAAAGATGAAAGAACTTTCCAGTGGGAAGAATTCCGAGAAGTTGGATGGCATATGGAAGAAG

Protein sequence

MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTSKELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK
Homology
[Close]
BLAST of Cucsa.032710 vs. Swiss-Prot
Match: DEXH7_ARATH (DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana GN=At1g58060 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-10
Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTS 60
           ML SEF+   A ++  + E                  S+  IS + +ES + D+      
Sbjct: 274 MLESEFQREHAFESATEQE------------------STCPISDNLHESVDADDVSVQML 333

Query: 61  KELSVDLMSTQEIESIVDVDGRACSAPKETS-VDLLSSQGKNDSEEPEDVEIGNFFLEDV 120
             L+   ++T   ES    + +  + P  +S  D ++S      E+ EDVE+G+ F E++
Sbjct: 334 DNLT---LNTNPAESYESEEIQTKALPSSSSGQDFVASD-----EDSEDVELGDTFFEEI 393

Query: 121 ETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
             +     ELL+L+K+EKM+EL S KN  KLDGIWKK
Sbjct: 394 PPSEISPHELLELQKEEKMRELRSEKNLGKLDGIWKK 404

[Close]
BLAST of Cucsa.032710 vs. Swiss-Prot
Match: DEXH4_ARATH (DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana GN=At1g58050 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-06
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 1 

Query: 15  VLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTSKELSVDLMSTQEIE 74
           +L+ E     QD   G  +  + SS+   VH  ES N D   +    +L++D   T  + 
Sbjct: 270 ILESEFQRDRQDCE-GAREKEVASSVLDDVH--ESVNADAFFFQLFDDLTLD---TNPVG 329

Query: 75  SIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVETNSDVAQELLKLKK 134
           S        C + ++ SV        NDS +  D+++G+ F EDV        ELL+L+K
Sbjct: 330 S--------CKSEEQESVV------SNDSLD--DLDLGDLFDEDVPPYVPSPHELLELQK 389

Query: 135 KEKMKELSSGKNSEKLDGIWKK 157
           KE M+EL + K+  KL+GIWKK
Sbjct: 390 KEIMRELCNEKHLTKLNGIWKK 389

[Close]
BLAST of Cucsa.032710 vs. TrEMBL
Match: A0A0D2ME78_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSM---QDGNVGVNQSNMRSSLDISVHRNESANVDENDW 60
           +LAS+F + RA  +V +    SSM   Q   + +  +   S+  +      + +V  ND 
Sbjct: 282 VLASDFLHERASASVSEGTVTSSMPEEQPEMISLGDAECNSAACVITSGVATGSV--NDT 341

Query: 61  STSKELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEE-PEDVEIGNFFL 120
            TSKELS     T+ I S                  LL +Q K D+E   ED+EIG+FFL
Sbjct: 342 ETSKELS-----TKSIPS------------------LLPTQEKGDAENMSEDLEIGDFFL 401

Query: 121 EDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           ED   N  +A E+LKL+K+EKMKEL S KN EKLDGIWKK
Sbjct: 402 EDSSINDVLASEVLKLRKQEKMKELYSEKNLEKLDGIWKK 416

[Close]
BLAST of Cucsa.032710 vs. TrEMBL
Match: A0A0D2QA58_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSM---QDGNVGVNQSNMRSSLDISVHRNESANVDENDW 60
           +LAS+F + RA  +V +    SSM   Q   + +  +   S+  +      + +V  ND 
Sbjct: 282 VLASDFLHERASASVSEGTVTSSMPEEQPEMISLGDAECNSAACVITSGVATGSV--NDT 341

Query: 61  STSKELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEE-PEDVEIGNFFL 120
            TSKELS     T+ I S                  LL +Q K D+E   ED+EIG+FFL
Sbjct: 342 ETSKELS-----TKSIPS------------------LLPTQEKGDAENMSEDLEIGDFFL 401

Query: 121 EDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           ED   N  +A E+LKL+K+EKMKEL S KN EKLDGIWKK
Sbjct: 402 EDSSINDVLASEVLKLRKQEKMKELYSEKNLEKLDGIWKK 416

[Close]
BLAST of Cucsa.032710 vs. TrEMBL
Match: A0A0D2NR48_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSM---QDGNVGVNQSNMRSSLDISVHRNESANVDENDW 60
           +LAS+F + RA  +V +    SSM   Q   + +  +   S+  +      + +V  ND 
Sbjct: 282 VLASDFLHERASASVSEGTVTSSMPEEQPEMISLGDAECNSAACVITSGVATGSV--NDT 341

Query: 61  STSKELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEE-PEDVEIGNFFL 120
            TSKELS     T+ I S                  LL +Q K D+E   ED+EIG+FFL
Sbjct: 342 ETSKELS-----TKSIPS------------------LLPTQEKGDAENMSEDLEIGDFFL 401

Query: 121 EDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           ED   N  +A E+LKL+K+EKMKEL S KN EKLDGIWKK
Sbjct: 402 EDSSINDVLASEVLKLRKQEKMKELYSEKNLEKLDGIWKK 416

[Close]
BLAST of Cucsa.032710 vs. TrEMBL
Match: A0A0D2RAF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSM---QDGNVGVNQSNMRSSLDISVHRNESANVDENDW 60
           +LAS+F + RA  +V +    SSM   Q   + +  +   S+  +      + +V  ND 
Sbjct: 282 VLASDFLHERASASVSEGTVTSSMPEEQPEMISLGDAECNSAACVITSGVATGSV--NDT 341

Query: 61  STSKELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEE-PEDVEIGNFFL 120
            TSKELS     T+ I S                  LL +Q K D+E   ED+EIG+FFL
Sbjct: 342 ETSKELS-----TKSIPS------------------LLPTQEKGDAENMSEDLEIGDFFL 401

Query: 121 EDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           ED   N  +A E+LKL+K+EKMKEL S KN EKLDGIWKK
Sbjct: 402 EDSSINDVLASEVLKLRKQEKMKELYSEKNLEKLDGIWKK 416

[Close]
BLAST of Cucsa.032710 vs. TrEMBL
Match: A0A0B0NB59_GOSAR (DEAH-box ATP-dependent helicase OS=Gossypium arboreum GN=F383_07581 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 64/160 (40.00%), Postives = 85/160 (53.12%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSMQDGN---VGVNQSNMRSSLDISVHRNESANVDENDW 60
           +LAS+F + RA  +V +    SSM +     + +  +   S+  +      + +V  ND 
Sbjct: 66  VLASDFLHERAAASVSEGTVTSSMPEEPPEMISLGDAECNSAACVITSGVATGSV--NDT 125

Query: 61  STSKELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEE-PEDVEIGNFFL 120
            TSKELS     T+ I S                  LL +Q K  SE   ED+EIG+FFL
Sbjct: 126 ETSKELS-----TKYIPS------------------LLPTQEKGHSENMSEDLEIGDFFL 185

Query: 121 EDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           ED   N  +A E+LKL+K+EKMKEL S KN EKLDGIWKK
Sbjct: 186 EDSSINDALASEVLKLQKQEKMKELYSEKNLEKLDGIWKK 200

[Close]
BLAST of Cucsa.032710 vs. TAIR10
Match: AT1G58060.1 (AT1G58060.1 RNA helicase family protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.4e-11
Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTS 60
           ML SEF+   A ++  + E                  S+  IS + +ES + D+      
Sbjct: 274 MLESEFQREHAFESATEQE------------------STCPISDNLHESVDADDVSVQML 333

Query: 61  KELSVDLMSTQEIESIVDVDGRACSAPKETS-VDLLSSQGKNDSEEPEDVEIGNFFLEDV 120
             L+   ++T   ES    + +  + P  +S  D ++S      E+ EDVE+G+ F E++
Sbjct: 334 DNLT---LNTNPAESYESEEIQTKALPSSSSGQDFVASD-----EDSEDVELGDTFFEEI 393

Query: 121 ETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
             +     ELL+L+K+EKM+EL S KN  KLDGIWKK
Sbjct: 394 PPSEISPHELLELQKEEKMRELRSEKNLGKLDGIWKK 404

[Close]
BLAST of Cucsa.032710 vs. TAIR10
Match: AT1G58050.1 (AT1G58050.1 RNA helicase family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 1 

Query: 15  VLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTSKELSVDLMSTQEIE 74
           +L+ E     QD   G  +  + SS+   VH  ES N D   +    +L++D   T  + 
Sbjct: 270 ILESEFQRDRQDCE-GAREKEVASSVLDDVH--ESVNADAFFFQLFDDLTLD---TNPVG 329

Query: 75  SIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVETNSDVAQELLKLKK 134
           S        C + ++ SV        NDS +  D+++G+ F EDV        ELL+L+K
Sbjct: 330 S--------CKSEEQESVV------SNDSLD--DLDLGDLFDEDVPPYVPSPHELLELQK 389

Query: 135 KEKMKELSSGKNSEKLDGIWKK 157
           KE M+EL + K+  KL+GIWKK
Sbjct: 390 KEIMRELCNEKHLTKLNGIWKK 389

[Close]
BLAST of Cucsa.032710 vs. NCBI nr
Match: gi|778680313|ref|XP_011651287.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 2.7e-79
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTS 60
           MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDE DWSTS
Sbjct: 276 MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDEKDWSTS 335

Query: 61  KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 120
           KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE
Sbjct: 336 KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 395

Query: 121 TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK
Sbjct: 396 TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 431

[Close]
BLAST of Cucsa.032710 vs. NCBI nr
Match: gi|778680315|ref|XP_011651288.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus])

HSP 1 Score: 303.1 bits (775), Expect = 2.7e-79
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTS 60
           MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDE DWSTS
Sbjct: 122 MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDEKDWSTS 181

Query: 61  KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 120
           KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE
Sbjct: 182 KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 241

Query: 121 TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK
Sbjct: 242 TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 277

[Close]
BLAST of Cucsa.032710 vs. NCBI nr
Match: gi|659112042|ref|XP_008456037.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.5e-74
Identity = 145/156 (92.95%), Postives = 149/156 (95.51%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTS 60
           MLASEFEYGRALDN LKDEA+SS+QDGNVGVNQ+NMRSSLDISVHRNES NVDE DWS S
Sbjct: 122 MLASEFEYGRALDNTLKDEAMSSVQDGNVGVNQANMRSSLDISVHRNESVNVDERDWSKS 181

Query: 61  KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 120
           KELSVDLMS+QEIES VDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE
Sbjct: 182 KELSVDLMSSQEIESTVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 241

Query: 121 TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           TN DVAQELLKLKKKEKMKELSSGKN EKLDGIWKK
Sbjct: 242 TNLDVAQELLKLKKKEKMKELSSGKNLEKLDGIWKK 277

[Close]
BLAST of Cucsa.032710 vs. NCBI nr
Match: gi|659112040|ref|XP_008456036.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.5e-74
Identity = 145/156 (92.95%), Postives = 149/156 (95.51%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSMQDGNVGVNQSNMRSSLDISVHRNESANVDENDWSTS 60
           MLASEFEYGRALDN LKDEA+SS+QDGNVGVNQ+NMRSSLDISVHRNES NVDE DWS S
Sbjct: 276 MLASEFEYGRALDNTLKDEAMSSVQDGNVGVNQANMRSSLDISVHRNESVNVDERDWSKS 335

Query: 61  KELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 120
           KELSVDLMS+QEIES VDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE
Sbjct: 336 KELSVDLMSSQEIESTVDVDGRACSAPKETSVDLLSSQGKNDSEEPEDVEIGNFFLEDVE 395

Query: 121 TNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           TN DVAQELLKLKKKEKMKELSSGKN EKLDGIWKK
Sbjct: 396 TNLDVAQELLKLKKKEKMKELSSGKNLEKLDGIWKK 431

[Close]
BLAST of Cucsa.032710 vs. NCBI nr
Match: gi|823136146|ref|XP_012467825.1| (PREDICTED: ATP-dependent RNA helicase DHX29 isoform X2 [Gossypium raimondii])

HSP 1 Score: 85.9 bits (211), Expect = 6.9e-14
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 1 

Query: 1   MLASEFEYGRALDNVLKDEALSSM---QDGNVGVNQSNMRSSLDISVHRNESANVDENDW 60
           +LAS+F + RA  +V +    SSM   Q   + +  +   S+  +      + +V  ND 
Sbjct: 282 VLASDFLHERASASVSEGTVTSSMPEEQPEMISLGDAECNSAACVITSGVATGSV--NDT 341

Query: 61  STSKELSVDLMSTQEIESIVDVDGRACSAPKETSVDLLSSQGKNDSEE-PEDVEIGNFFL 120
            TSKELS     T+ I S                  LL +Q K D+E   ED+EIG+FFL
Sbjct: 342 ETSKELS-----TKSIPS------------------LLPTQEKGDAENMSEDLEIGDFFL 401

Query: 121 EDVETNSDVAQELLKLKKKEKMKELSSGKNSEKLDGIWKK 157
           ED   N  +A E+LKL+K+EKMKEL S KN EKLDGIWKK
Sbjct: 402 EDSSINDVLASEVLKLRKQEKMKELYSEKNLEKLDGIWKK 416

The following BLAST results are available for this feature:
BLAST of Cucsa.032710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEXH7_ARATH6.0e-1031.85DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana... [more]
DEXH4_ARATH1.8e-0633.10DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana... [more]
BLAST of Cucsa.032710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2ME78_GOSRA4.8e-1440.63Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1[more]
A0A0D2QA58_GOSRA4.8e-1440.63Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1[more]
A0A0D2NR48_GOSRA4.8e-1440.63Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1[more]
A0A0D2RAF0_GOSRA4.8e-1440.63Uncharacterized protein OS=Gossypium raimondii GN=B456_002G216000 PE=4 SV=1[more]
A0A0B0NB59_GOSAR4.1e-1340.00DEAH-box ATP-dependent helicase OS=Gossypium arboreum GN=F383_07581 PE=4 SV=1[more]
BLAST of Cucsa.032710 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G58060.13.4e-1131.85 RNA helicase family protein[more]
AT1G58050.11.0e-0733.10 RNA helicase family protein[more]
BLAST of Cucsa.032710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680313|ref|XP_011651287.1|2.7e-7999.36PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis sativus][more]
gi|778680315|ref|XP_011651288.1|2.7e-7999.36PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis sativus][more]
gi|659112042|ref|XP_008456037.1|3.5e-7492.95PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Cucumis melo][more]
gi|659112040|ref|XP_008456036.1|3.5e-7492.95PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Cucumis melo][more]
gi|823136146|ref|XP_012467825.1|6.9e-1440.63PREDICTED: ATP-dependent RNA helicase DHX29 isoform X2 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.032710.1Cucsa.032710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 116..136
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.032710Melon (DHL92) v3.6.1cgymedB002
Cucsa.032710Silver-seed gourdcarcgyB0048
Cucsa.032710Silver-seed gourdcarcgyB0730
Cucsa.032710Cucumber (Chinese Long) v3cgycucB006
Cucsa.032710Watermelon (97103) v2cgywmbB003
Cucsa.032710Wax gourdcgywgoB003
Cucsa.032710Cucurbita maxima (Rimu)cgycmaB0007
Cucsa.032710Cucurbita maxima (Rimu)cgycmaB0012
Cucsa.032710Cucurbita moschata (Rifu)cgycmoB0006
Cucsa.032710Cucurbita moschata (Rifu)cgycmoB0012
Cucsa.032710Wild cucumber (PI 183967)cgycpiB003
Cucsa.032710Cucumber (Chinese Long) v2cgycuB003
Cucsa.032710Melon (DHL92) v3.5.1cgymeB002
Cucsa.032710Watermelon (Charleston Gray)cgywcgB003
Cucsa.032710Watermelon (97103) v1cgywmB002
Cucsa.032710Cucurbita pepo (Zucchini)cgycpeB0005
Cucsa.032710Cucurbita pepo (Zucchini)cgycpeB0007
Cucsa.032710Bottle gourd (USVL1VR-Ls)cgylsiB003