Cucsa.032580 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.032580
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	scaffold00429 : 1883270 .. 1886497 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAAACTTTGGGGCCACATATCACTTGATAGGTTCTTCGGAGCACTTTGTCTCTTATACACCCTGTGCCGGTAATGAGAAAATCAAGATAGTAGATGGTTCTTTAGCCCCGATTGCTGGCAAAGGACAAATAGTTCTCTTTGACGGTTTCTCTCTCCATAATGTTTTGCACGTGCCTAAGCTTTCTTACAATTTGTTATCTATCAGTAAGATCACTCGTGAGCTGCATTGTAAAGCTATTTTTTTACCTGAATCTGCCTGTTTTTAAGACTTGACCTTGAGGAGGACGATTGGCACTATCTGGCATAGCAGGGGACTTTACATCCTTGATGATGATACCTCTGGTAGTAGTATCTCTAAGAATGATTTACTATCTTACTATTTTAGCACTTCTAAACATGACTTTATGTTATGACATTTTCAGTTGGGTCATCCAAACTTTACTTATATGAAATATTATTTTTCTCATCTTTTTTCTAAAATTGATGTCTCATCGTTATCTTGTGATGTGTGCATTCGGACAAAAGAACATCGGGTTTCTTTTCCTTCACAACCATATAAACCCACAAAACCGTTTACCCTTATCCATAGTGATGTTTGGGGTCCCTCCAAGGTCACCACCTCATCTGGGAAACGGTGGTTTGTAACTTTCATTGATGATCATACCCGTTTTACCTGAGTCTACCTTATCGCCAATAAATCAAAGGTTTCTTCTATTTTTCAAAACTTCTATCACACCATTGAAACCTAATTCTATAAAAAAAAAATTAGCTATTATTTGGAGTGATAATGAATGGAAATTTCAAAACCATAGCCTTAGTGAATTTCTAGCCTCTAAGGGGATTGTTCACCAAAACTCATGCGCCTACACTCCTCAACAAAATGGAGTGGCCGAACAAAAAAATTGTCACCTTCTGGAAGTAGCTCGTTCCCTTATGCTATCCACGTCCCTTCCTTCATACTTGTGGAGAGATGTTATTCTTACAGCAGCTCATTTAATCAATAGAATGCATTCTCGTATTCTCCACCTTCAGACTCCCTTAAATTGTCTTAAGGAGCCCTACCCCTATACCCATATTGTTTCTGAGGTTCCTCTTTGTGTGTTTGGGTGTACCGCTTATGTTCATAATTTTGGCTAGACCAAATTTACCCCTCGAGCTCAGGCATGTGTGTTTGTTGGGTATCCCCTTCACCAGAGTGGTTATAAATGTTTTTACTCATCGTCCAGGAAATACTTTGTCACTATGGATGTTACTTTCTATGAGGGTCGACCTTACATTCCCATTAGCCATCTTCAGGGAAAGAGTGTGAGTGAAGAGTCTAACAACGCCTTTGAATTTATCGAACCTACTTCTAATATTGTGTTTGATATCGATCTTCATCATATAGTCCTACCCACAAACCAAGTTCCTTGGAAAATGTATTGCAGGAGGAATCTCAGAAAGGAAGTCAGGTCCCCTACTAGTCAGCAGCCAGCTCCAGTCCACGACTCTAAACCTCCTCGAGATCAAGGTATGAAAAATCCTACTGGACCGTGTACTAATAATACGATAAGTGAGAATGACAGATCTGATGTTGTTGTTCTTGAAAATGTGGAAGAAAAGAATAGTGGTGATGAGATTGAGACAGAAACCGATAATAATGAAACTGAACAGGGTCATACAGAATTTGATGAGTATGATCCCTCTCTTGACATTCTCATTGCTATGAGAAAAGGTACCTGGTCTTGTACTAAACATCCAATGTGCAACTATGTTTCCTATGATAATCTCTCTCCACAGTTCAGAGCTTTTACAACAAGCCTTGACTCTACCATAATACCGAAAAACATCTACACTGCTTTAGAGTGTTCTGAATGGAAGAATGCAGTCATGGAAGAAATGAAGGCTCTTAAAAGGATAGAGCTTGAAAATTTTGTGCTCTACCTCAGGGTCACAAAACTGTGGGATGCAAATGGGTGTTCTCTCTTAAATACAAAGCAGATGGTACTCTTGACAGACACAAAGCAAGGTTAGTTGCAAAGGAATTTACTCAAACCTATGGAATTGATTATTCAGAAACTTTTTCTCCAGTTGCTAAGTTGAATACTGTTATAGTCCTGCTATATGTTGCTGTGAACAAAGATTGGCCTCTCTACCAGTTGGATGTTAAGAATGGCTTTTTGAATGGAGACCTTATGGAGGAGGTCTACATGAGGCCTCCGCCTGGATTTAAAGTCCAAAAATCCCTATATGGTTTGAAACAGTCTCCCAGAGCATGATTTGATAGATTCACTACCTTTGTCAAGTCCCAAGGATACAGTCAGGGGCACTCTAATCATACTTTATTTACAAAGGTTTCCAAGACAGGGAAGATTGTTGTTCTAATATTTTATGTGGATGACATTGTTTTAACTGAAGATGATCAGGCAGAAATCAGTCAACTAAAGCAGAGAATGGGTGATGAATTTGAAATCAAGGATTTGGAAAATCTGAAATATTTCCTTGGAATGGGTCAAATCTAAAGAAGGTATCTCCATGTCTCAGAGAAAATACACCATTGATTTGCTAACCGAAACAGGTATTTTGGGATGTCGTTCTACTGATACTCCTATTGAGTTCAATTGTAAACTTGGAAACTCTAATGATCAAGTTCCAGTTGATAAAGAACAATATCAGCATCTTGTGGGTAAGTTGATTTACTTATCTCATACTCATCCTGATATTTCCTTTGTTGTGAGTGTTGTCAGCCAGTTTATGCAAGCTCCTTATGAGAAACACATGAAAGCTGTCAATAGAATTCTGAGATACTTGAAAATAACACCTGGTAAAGGGTCATGTTTAGAAAAACAAGCAGAAAGACCATTGAGGCATATACCGACTCGAATTGGGTTGGATCTGTTGTTGACAAAAAGTCTACCTCTGGTTATTGTACCTTTGTTTAGGGCAATCTTGTTACTTGGAGGAGTAAGAAGCAAAGTGTTGTGGTCAGGAGCAGTGTTGAGGCCGAATACAGAGTTATGAGTTTGGGAATATGTGATGAAATTTGGCTCCAGAAAGTCCTATCTGATCTTCATCAAGAACGTGAGACTCCTTTAAAGCTCTTTTGTGATAATAAAGCCGCTATTAGTATTGCTAACAACCCAGTTCAACATGATAGAACTAAAAATGTTGAGATTGATCCTTTCATCAAAGAAATACTTGACAGTGGAAGCATATGCATACCGTACATCCCCTCTAGCCAATAG

mRNA sequence

attttaaactttggggccacatatcacttgataggttcttcggagcactttgtctcttatacaccctgtgccggtaatgagaaaatcaagatagtagatggttctttagccccgattgctggcaaaggacaaatattgggtcatccaaactttacttatatgaaatattatttttctcatcttttttctaaaattgatgtctcatcgttatcttgtgatgtgtgcattcggacaaaagaacatcgggtttcttttccttcacaaccatataaacccacaaaaccgtttacccttatccatagtgatgtttggggtccctccaagaccaaatttacccctcgagctcaggcatgtgtgtttgttgggtatccccttcaccagagtggttataaatgtttttactcatcgtccaggaaatactttgtcactatggatgttactttctatgagggtcgaccttacattcccattagccatcttcagggaaagagtgtgagtgaagagtctaacaacgcctttgaatttatcgaacctacttctaatattgtgtttgatatcgatcttcatcatatagtcctacccacaaaccaagttccttggaaaatgtattgcaggaggaatctcagaaaggaagtcaggtcccctactagtcagcagccagctccagtccacgactctaaacctcctcgagatcaagatggtactcttgacagacacaaagcaaggttagttgcaaaggaatttactcaaacctatggaattgattattcagaaactttttctccagttgctaagttgaatactgttatagtcctgctatatgttgctgtgaacaaagattggcctctctaccagttggatgttaagaatggctttttgaatggagaccttatggaggaggtctacatgaggcctccgcctggatttaaagtccaaaaatccctatatggtattttgggatgtcgttctactgatactcctattgagttcaattgtaaacttggaaactctaatgatcaagttccagttgataaagaacaatatcagcatcttgtgggtaagttgatttacttatctcatactcatcctgatatttcctttgttgtgagtgttgtcagccagtttatgcaagctccttatgagaaacacatgaaagctgtcaatagaattctgagatacttgaaaataacacctggtaaagggtcatttatgagtttgggaatatgtgatgaaatttggctccagaaagtcctatctgatcttcatcaagaacgtgagactcctttaaagctcttttgtgataataaagccgctattagtattgctaacaacccagttcaacatgatagaactaaaaatgttgagattgatcctttcatcaaagaaatacttgacagtggaagcatatgcataccgtacatcccctctagccaatag

Coding sequence (CDS)

ATTTTAAACTTTGGGGCCACATATCACTTGATAGGTTCTTCGGAGCACTTTGTCTCTTATACACCCTGTGCCGGTAATGAGAAAATCAAGATAGTAGATGGTTCTTTAGCCCCGATTGCTGGCAAAGGACAAATATTGGGTCATCCAAACTTTACTTATATGAAATATTATTTTTCTCATCTTTTTTCTAAAATTGATGTCTCATCGTTATCTTGTGATGTGTGCATTCGGACAAAAGAACATCGGGTTTCTTTTCCTTCACAACCATATAAACCCACAAAACCGTTTACCCTTATCCATAGTGATGTTTGGGGTCCCTCCAAGACCAAATTTACCCCTCGAGCTCAGGCATGTGTGTTTGTTGGGTATCCCCTTCACCAGAGTGGTTATAAATGTTTTTACTCATCGTCCAGGAAATACTTTGTCACTATGGATGTTACTTTCTATGAGGGTCGACCTTACATTCCCATTAGCCATCTTCAGGGAAAGAGTGTGAGTGAAGAGTCTAACAACGCCTTTGAATTTATCGAACCTACTTCTAATATTGTGTTTGATATCGATCTTCATCATATAGTCCTACCCACAAACCAAGTTCCTTGGAAAATGTATTGCAGGAGGAATCTCAGAAAGGAAGTCAGGTCCCCTACTAGTCAGCAGCCAGCTCCAGTCCACGACTCTAAACCTCCTCGAGATCAAGATGGTACTCTTGACAGACACAAAGCAAGGTTAGTTGCAAAGGAATTTACTCAAACCTATGGAATTGATTATTCAGAAACTTTTTCTCCAGTTGCTAAGTTGAATACTGTTATAGTCCTGCTATATGTTGCTGTGAACAAAGATTGGCCTCTCTACCAGTTGGATGTTAAGAATGGCTTTTTGAATGGAGACCTTATGGAGGAGGTCTACATGAGGCCTCCGCCTGGATTTAAAGTCCAAAAATCCCTATATGGTATTTTGGGATGTCGTTCTACTGATACTCCTATTGAGTTCAATTGTAAACTTGGAAACTCTAATGATCAAGTTCCAGTTGATAAAGAACAATATCAGCATCTTGTGGGTAAGTTGATTTACTTATCTCATACTCATCCTGATATTTCCTTTGTTGTGAGTGTTGTCAGCCAGTTTATGCAAGCTCCTTATGAGAAACACATGAAAGCTGTCAATAGAATTCTGAGATACTTGAAAATAACACCTGGTAAAGGGTCATTTATGAGTTTGGGAATATGTGATGAAATTTGGCTCCAGAAAGTCCTATCTGATCTTCATCAAGAACGTGAGACTCCTTTAAAGCTCTTTTGTGATAATAAAGCCGCTATTAGTATTGCTAACAACCCAGTTCAACATGATAGAACTAAAAATGTTGAGATTGATCCTTTCATCAAAGAAATACTTGACAGTGGAAGCATATGCATACCGTACATCCCCTCTAGCCAATAG

Protein sequence

ILNFGATYHLIGSSEHFVSYTPCAGNEKIKIVDGSLAPIAGKGQILGHPNFTYMKYYFSHLFSKIDVSSLSCDVCIRTKEHRVSFPSQPYKPTKPFTLIHSDVWGPSKTKFTPRAQACVFVGYPLHQSGYKCFYSSSRKYFVTMDVTFYEGRPYIPISHLQGKSVSEESNNAFEFIEPTSNIVFDIDLHHIVLPTNQVPWKMYCRRNLRKEVRSPTSQQPAPVHDSKPPRDQDGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGFLNGDLMEEVYMRPPPGFKVQKSLYGILGCRSTDTPIEFNCKLGNSNDQVPVDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKGSFMSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEIDPFIKEILDSGSICIPYIPSSQ*

Homology

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BLAST of Cucsa.032580 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.5e-16
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 227 KPPRDQDGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQL 286
           K  +D D  L R+KARLV K F Q  GID+ E FSPV K+ ++  +L +A + D  + QL
Sbjct: 862 KLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQL 921

Query: 287 DVKNGFLNGDLMEEVYMRPPPGF----------KVQKSLYGI 319
           DVK  FL+GDL EE+YM  P GF          K+ KSLYG+
Sbjct: 922 DVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGL 963

HSP 2 Score: 49.7 bits (117), Expect = 1.0e-04
Identity = 55/184 (29.89%), Postives = 80/184 (43.48%), Query Frame = 1


Query: 249  TQTYGIDYSET---FSPVAKLNTVIVLLYV----AVNKDWPLYQL---DVKNGFLNGDL- 308
            +QTY   YS+    F   ++ N +I+LLYV     V KD  L      D+   F   DL 
Sbjct: 980  SQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1039

Query: 309  -------MEEVYMRPPPGFKVQKSLY--------GILGCRSTDTPIEFNCKLGNSNDQVP 368
                   M+ V  R      + +  Y         +   +   TP+  + KL        
Sbjct: 1040 PAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTT 1099

Query: 369  VD------KEQYQHLVGKLIY-LSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLK 400
            V+      K  Y   VG L+Y +  T PDI+  V VVS+F++ P ++H +AV  ILRYL+
Sbjct: 1100 VEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLR 1159

HSP 3 Score: 40.8 bits (94), Expect = 4.9e-02
Identity = 21/70 (30.00%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 412  IWLQKVLSDL--HQERETPLKLFCDNKAAISIANNPVQHDRTKNVEID-PFIKEILDSGS 471
            IWL++ L +L  HQ+      ++CD+++AI ++ N + H RTK++++   +I+E++D  S
Sbjct: 1235 IWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDES 1294

Query: 472  ICIPYIPSSQ 479
            + +  I +++
Sbjct: 1295 LKVLKISTNE 1301

[Close]

BLAST of Cucsa.032580 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 6.6e-15
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 238  RHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGFLNGDL 297
            R+KARLVA+ FTQ Y IDY ETF+PVA++++   +L + +  +  ++Q+DVK  FLNG L
Sbjct: 953  RYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTL 1012

Query: 298  MEEVYMRPPPGF--------KVQKSLYGI 319
             EE+YMR P G         K+ K++YG+
Sbjct: 1013 KEEIYMRLPQGISCNSDNVCKLNKAIYGL 1041

HSP 2 Score: 58.2 bits (139), Expect = 3.0e-07
Identity = 28/80 (35.00%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 400  KGSFMSL--GICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEID 459
            +  +M+L   + + +WL+ +L+ ++ + E P+K++ DN+  ISIANNP  H R K+++I 
Sbjct: 1295 EAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIK 1354

Query: 460  -PFIKEILDSGSICIPYIPS 477
              F +E + +  IC+ YIP+
Sbjct: 1355 YHFAREQVQNNVICLEYIPT 1374

[Close]

BLAST of Cucsa.032580 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-06
Identity = 34/119 (28.57%), Postives = 55/119 (46.22%), Query Frame = 1


Query: 317 GILGCRSTDTPIEFNCKLGNSNDQVPVDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFM 376
           G+L C+   TP+        S  + P D   ++ +VG L YL+ T PDIS+ V++V Q M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 377 QAPYEKHMKAVNRILRYLKITPGKGSFMSLGICDEIWLQKVLSDLHQERETPLKLFCDN 436
             P       + R+LRY+K T   G +                 +H+  +  ++ FCD+
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLY-----------------IHKNSKLNVQAFCDS 170

[Close]

BLAST of Cucsa.032580 vs. TrEMBL
Match: W9RJF7_9ROSA (E3 ubiquitin-protein ligase listerin OS=Morus notabilis GN=L484_003308 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.7e-62
Identity = 128/252 (50.79%), Postives = 178/252 (70.63%), Query Frame = 1


Query: 233 DGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGF 292
           DG+++R+KARL+AK FTQTYG+DY ETF+PVAK+N++ VLL +AVN +WPLYQLDVKN F
Sbjct: 35  DGSVERYKARLMAKGFTQTYGLDYQETFAPVAKINSIRVLLSLAVNSNWPLYQLDVKNAF 94

Query: 293 LNGDLMEEVYMRPPPGF----------KVQKSLYGILGCRSTDTPIEFNCKLGNSNDQVP 352
           LNG+L EEV+M  PPGF          +++KSLY   GC++ +TPIE N KL  +  +  
Sbjct: 95  LNGNLEEEVFMSLPPGFEKFFSQDKVCRLKKSLY---GCKTAETPIEANLKLTPAKPEDV 154

Query: 353 VDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKGS 412
           +D+E++Q LVGKLIYLSHT  DI+F VSV+    +A      KA+    +       +  
Sbjct: 155 IDREKFQRLVGKLIYLSHTRLDIAFAVSVMRIGQEARLIDDQKAIRSSAK------AEFR 214

Query: 413 FMSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEIDP-FIK 472
           F++ GIC+ IW++++  DL+     P+K++CDNKAA SIA+NPV HDRTK++E+D  FIK
Sbjct: 215 FLAHGICEVIWIKRLFKDLNISVPLPIKVYCDNKAASSIAHNPVLHDRTKHIEVDKHFIK 274

Query: 473 EILDSGSICIPY 474
           E ++SG IC+ Y
Sbjct: 275 ENIESGLICVSY 277

[Close]

BLAST of Cucsa.032580 vs. TrEMBL
Match: A5AD04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033522 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.5e-55
Identity = 133/280 (47.50%), Postives = 174/280 (62.14%), Query Frame = 1


Query: 233 DGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGF 292
           DG+++R K RLVAK +TQTYGIDY++TF+P+AK+NT+ VLL +A N +WPL Q DVKN F
Sbjct: 573 DGSIERFKVRLVAKGYTQTYGIDYTKTFAPIAKINTIRVLLSLAANLNWPLQQFDVKNSF 632

Query: 293 LNGDLMEEVYMRPPPGFKV-----QKSLYGILGCRSTDTPIEFNCKLGNSNDQVPVDKEQ 352
           L+G+L EEVYM  PPG  V     QK + G+ GC+  +T IE   KL   ++QV  DK +
Sbjct: 633 LHGELSEEVYMDLPPGCMVPEKQCQKEI-GMSGCQPVNTLIEKGLKLCVESNQVSTDKGR 692

Query: 353 YQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKGSFMSLG 412
           YQ LVG+L+YL++T PD+++ +SVVSQ+M  P E+HM AV RILRYLK  PGKG   +  
Sbjct: 693 YQRLVGRLMYLAYTRPDLAYALSVVSQYMHNPGEQHMNAVMRILRYLKNAPGKGILFTKN 752

Query: 413 I--------CDEIWL-----------QKVLSDLHQERE-------TPLKLFCDNKAAIS- 472
           +         D  W            Q V++    E E         ++LFCDNK A   
Sbjct: 753 VDHQSIEVYTDADWAGGNLVTWKSKKQNVVARSSAEAEFRGYLSKQLIRLFCDNKVACDN 812

Query: 473 -----IANNPVQHDRTKNVEIDP-FIKEILDSGSICIPYI 475
                IA+NPVQHDRTK VE+D  FIKE LD   + +P I
Sbjct: 813 KVACYIAHNPVQHDRTKYVEVDRFFIKEKLDDKIMELPKI 851

[Close]

BLAST of Cucsa.032580 vs. TrEMBL
Match: A5AD04_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033522 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-05
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 61  LFSKIDVSSLSCDVCIRTKEHRVSFPSQPYKPTKPFTLIHSDVWGPSK 109
           LF+K D+S   CD+C   K HR SFP    K   PF +IHSDVWG SK
Sbjct: 200 LFAKSDISGFCCDICELAKSHRASFPLILNKSLFPFMVIHSDVWGSSK 247

HSP 2 Score: 52.8 bits (125), Expect = 1.4e-03
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1


Query: 108 KTKFTPRAQACVFVGYPLHQSGYKCFYSSSRKYFVTMDVTFY 150
           +TK T  A  CVFVGY LH+ GY+C++  +R+ ++TMDV  Y
Sbjct: 357 RTKLTSHALQCVFVGYALHKKGYQCYHPPTRQMYITMDVGKY 398

HSP 3 Score: 213.4 bits (542), Expect = 6.1e-52
Identity = 120/254 (47.24%), Postives = 165/254 (64.96%), Query Frame = 1


Query: 232 QDGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNG 291
           +DG++DR KA+LVAK FTQ+YGIDY ETF+ VAKLNT I +L   + K++ +  +     
Sbjct: 25  EDGSIDRFKAQLVAKGFTQSYGIDYEETFALVAKLNTEINILKDLLAKEFEIKAVGSLKY 84

Query: 292 FLNGDLMEEVYMRPPPGFKVQKSLY--------GILGCRSTDTPIEFNCKLGNSNDQVPV 351
           FL  ++      R   G  V +            +L C+ TDTP++   KLG   +  PV
Sbjct: 85  FLGMEIA-----RSKAGILVSQRKCVMDLLKETRMLRCKPTDTPMDSTTKLGTKEESAPV 144

Query: 352 DKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKGSF 411
           DK +YQ LVGKLIYLSHT PDI F +S+VSQFM  P E+H++AV RILR       +   
Sbjct: 145 DKGRYQRLVGKLIYLSHTRPDIGFSISMVSQFMNNPNEEHIEAVYRILR--SSAEAEFRA 204

Query: 412 MSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEID-PFIKE 471
           M+ GIC+E+WL+++L +L    E P+K+FCDN++AISIA NPV HDRTK+VEID  FIKE
Sbjct: 205 MAHGICEEMWLRRLLKELRIMIEEPMKMFCDNQSAISIAKNPVHHDRTKHVEIDRHFIKE 264

Query: 472 ILDSGSICIPYIPS 477
            ++ G I + ++P+
Sbjct: 265 KIEGGVIKLLHLPT 271

[Close]

BLAST of Cucsa.032580 vs. TrEMBL
Match: E5GC16_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.7e-49
Identity = 103/155 (66.45%), Postives = 118/155 (76.13%), Query Frame = 1


Query: 258 ETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGFLNGDLMEEVYMRPPPGFKVQKSLY- 317
           + FSPVAKLNTV  L  VAVNKDWPL QLD KN FLNG L+EEVYM PPP F+ Q   + 
Sbjct: 233 KNFSPVAKLNTVKDLS-VAVNKDWPLNQLDFKNAFLNGGLVEEVYMSPPPSFEAQFGQHI 292

Query: 318 ----------GILGCRSTDTPIEFNCKLGNSNDQVPVDKEQYQHLVGKLIYLSHTHPDIS 377
                     G+ GC   DTPIEFNC LGNS+DQVP+DK++YQ LVGKL +LSHT PDIS
Sbjct: 293 KYTLELLTKTGMFGCHPADTPIEFNCTLGNSDDQVPIDKDKYQRLVGKLNHLSHTRPDIS 352

Query: 378 FVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKG 402
           F+VSVVSQF+QAPYE+HM+A+ RILRYLK TPG G
Sbjct: 353 FIVSVVSQFIQAPYEEHMEAIKRILRYLKTTPGTG 386

[Close]

BLAST of Cucsa.032580 vs. TrEMBL
Match: E5GC16_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 40.0 bits (92), Expect = 9.3e+00
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 1


Query: 26 NEKIKIVDGSLAPIAGKGQILGHPNFTYMKYYFSHLFSK--IDVSSLSCDV 75
          NEKI+I D SLAPIAGKGQI+    F+          S   + +S ++C++
Sbjct: 18 NEKIRIADSSLAPIAGKGQIVLFDGFSLQNVLHVPKLSSNLLSISKITCEL 68

HSP 2 Score: 203.4 bits (516), Expect = 6.3e-49
Identity = 118/259 (45.56%), Postives = 164/259 (63.32%), Query Frame = 1


Query: 233 DGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGF 292
           +G ++ +KA+LVAK +TQ YGIDY ETF+ VAK+N V VLL +  N DWPL + DVKN F
Sbjct: 28  NGLIEWYKAKLVAKGYTQAYGIDYQETFAXVAKMNFVRVLLSLTANLDWPLQKFDVKNVF 87

Query: 293 LNGDLMEEVYMRPPPGF----------KVQKSLYGILGCRSTDTPIEFNCKLGNSNDQVP 352
           L+G+L EEV+M  P GF          +++KSLYG        TPI  N +L    + +P
Sbjct: 88  LHGNL-EEVFMDLPLGFEGKFSSEKDCRLKKSLYG--------TPINQNHQLDFMTEGIP 147

Query: 353 VDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKH----MKAVNRILRYLKITP 412
           VDK +YQ LVG+LIYLSHT PDI++ +S+ S               ++  + +       
Sbjct: 148 VDKGRYQRLVGRLIYLSHTRPDIAYAISMRSTLGYCTLVDDNFVTWRSKKKHVVVRSSVE 207

Query: 413 GKGSFMSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEIDP 472
            +   M+LGIC+ +WL+ +L +L    E P++L+CDNKAA+SIA+N VQH++TK+VEID 
Sbjct: 208 AEFQTMALGICELMWLKGLLRELQVNLENPMRLYCDNKAAVSIAHNLVQHNKTKHVEIDR 267

Query: 473 -FIKEILDSGSICIPYIPS 477
            FIKE +DSG IC  +I S
Sbjct: 268 YFIKEKIDSGLICTLFIAS 277

[Close]

BLAST of Cucsa.032580 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-20
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 1


Query: 231 DQDGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKN 290
           + DGT++R+KARLVAK +TQ  GID+ ETFSPV KL +V ++L ++   ++ L+QLD+ N
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197

Query: 291 GFLNGDLMEEVYMRPPPGFK--------------VQKSLYGI 319
            FLNGDL EE+YM+ PPG+               ++KS+YG+
Sbjct: 198 AFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

HSP 2 Score: 70.9 bits (172), Expect = 2.5e-12
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 317 GILGCRSTDTPIEFNCKLGNSNDQVPVDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFM 376
           G+LGC+ +  P++ +      +    VD + Y+ L+G+L+YL  T  DISF V+ +SQF 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 377 QAPYEKHMKAVNRILRYLKITPGKGSFMS 406
           +AP   H +AV +IL Y+K T G+G F S
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYS 435

HSP 3 Score: 48.1 bits (113), Expect = 1.7e-05
Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 1


Query: 404 MSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEID 458
           +S    + +WL +   +L      P  LFCDN AAI IA N V H+RTK++E D
Sbjct: 494 LSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESD 547

[Close]

BLAST of Cucsa.032580 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 34/119 (28.57%), Postives = 55/119 (46.22%), Query Frame = 1


Query: 317 GILGCRSTDTPIEFNCKLGNSNDQVPVDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFM 376
           G+L C+   TP+        S  + P D   ++ +VG L YL+ T PDIS+ V++V Q M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 377 QAPYEKHMKAVNRILRYLKITPGKGSFMSLGICDEIWLQKVLSDLHQERETPLKLFCDN 436
             P       + R+LRY+K T   G +                 +H+  +  ++ FCD+
Sbjct: 130 HEPTLADFDLLKRVLRYVKGTIFHGLY-----------------IHKNSKLNVQAFCDS 170

[Close]

BLAST of Cucsa.032580 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 49.3 bits (116), Expect = 7.7e-06
Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 1


Query: 233 DGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVA 277
           DGTLDR KARLVAK F Q  GI + ET+SPV +  T+  +L VA
Sbjct: 82  DGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cucsa.032580 vs. NCBI nr
Match: gi|703092620|ref|XP_010094679.1| (E3 ubiquitin-protein ligase listerin [Morus notabilis])

HSP 1 Score: 248.4 bits (633), Expect = 2.5e-62
Identity = 128/252 (50.79%), Postives = 178/252 (70.63%), Query Frame = 1


Query: 233 DGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGF 292
           DG+++R+KARL+AK FTQTYG+DY ETF+PVAK+N++ VLL +AVN +WPLYQLDVKN F
Sbjct: 35  DGSVERYKARLMAKGFTQTYGLDYQETFAPVAKINSIRVLLSLAVNSNWPLYQLDVKNAF 94

Query: 293 LNGDLMEEVYMRPPPGF----------KVQKSLYGILGCRSTDTPIEFNCKLGNSNDQVP 352
           LNG+L EEV+M  PPGF          +++KSLY   GC++ +TPIE N KL  +  +  
Sbjct: 95  LNGNLEEEVFMSLPPGFEKFFSQDKVCRLKKSLY---GCKTAETPIEANLKLTPAKPEDV 154

Query: 353 VDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKGS 412
           +D+E++Q LVGKLIYLSHT  DI+F VSV+    +A      KA+    +       +  
Sbjct: 155 IDREKFQRLVGKLIYLSHTRLDIAFAVSVMRIGQEARLIDDQKAIRSSAK------AEFR 214

Query: 413 FMSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEIDP-FIK 472
           F++ GIC+ IW++++  DL+     P+K++CDNKAA SIA+NPV HDRTK++E+D  FIK
Sbjct: 215 FLAHGICEVIWIKRLFKDLNISVPLPIKVYCDNKAASSIAHNPVLHDRTKHIEVDKHFIK 274

Query: 473 EILDSGSICIPY 474
           E ++SG IC+ Y
Sbjct: 275 ENIESGLICVSY 277

[Close]

BLAST of Cucsa.032580 vs. NCBI nr
Match: gi|147866235|emb|CAN82041.1| (hypothetical protein VITISV_033522 [Vitis vinifera])

HSP 1 Score: 224.2 bits (570), Expect = 5.0e-55
Identity = 133/280 (47.50%), Postives = 174/280 (62.14%), Query Frame = 1


Query: 233 DGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGF 292
           DG+++R K RLVAK +TQTYGIDY++TF+P+AK+NT+ VLL +A N +WPL Q DVKN F
Sbjct: 573 DGSIERFKVRLVAKGYTQTYGIDYTKTFAPIAKINTIRVLLSLAANLNWPLQQFDVKNSF 632

Query: 293 LNGDLMEEVYMRPPPGFKV-----QKSLYGILGCRSTDTPIEFNCKLGNSNDQVPVDKEQ 352
           L+G+L EEVYM  PPG  V     QK + G+ GC+  +T IE   KL   ++QV  DK +
Sbjct: 633 LHGELSEEVYMDLPPGCMVPEKQCQKEI-GMSGCQPVNTLIEKGLKLCVESNQVSTDKGR 692

Query: 353 YQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKGSFMSLG 412
           YQ LVG+L+YL++T PD+++ +SVVSQ+M  P E+HM AV RILRYLK  PGKG   +  
Sbjct: 693 YQRLVGRLMYLAYTRPDLAYALSVVSQYMHNPGEQHMNAVMRILRYLKNAPGKGILFTKN 752

Query: 413 I--------CDEIWL-----------QKVLSDLHQERE-------TPLKLFCDNKAAIS- 472
           +         D  W            Q V++    E E         ++LFCDNK A   
Sbjct: 753 VDHQSIEVYTDADWAGGNLVTWKSKKQNVVARSSAEAEFRGYLSKQLIRLFCDNKVACDN 812

Query: 473 -----IANNPVQHDRTKNVEIDP-FIKEILDSGSICIPYI 475
                IA+NPVQHDRTK VE+D  FIKE LD   + +P I
Sbjct: 813 KVACYIAHNPVQHDRTKYVEVDRFFIKEKLDDKIMELPKI 851

[Close]

BLAST of Cucsa.032580 vs. NCBI nr
Match: gi|147866235|emb|CAN82041.1| (hypothetical protein VITISV_033522 [Vitis vinifera])

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-05
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1


Query: 61  LFSKIDVSSLSCDVCIRTKEHRVSFPSQPYKPTKPFTLIHSDVWGPSK 109
           LF+K D+S   CD+C   K HR SFP    K   PF +IHSDVWG SK
Sbjct: 200 LFAKSDISGFCCDICELAKSHRASFPLILNKSLFPFMVIHSDVWGSSK 247

HSP 2 Score: 52.8 bits (125), Expect = 2.0e-03
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1


Query: 108 KTKFTPRAQACVFVGYPLHQSGYKCFYSSSRKYFVTMDVTFY 150
           +TK T  A  CVFVGY LH+ GY+C++  +R+ ++TMDV  Y
Sbjct: 357 RTKLTSHALQCVFVGYALHKKGYQCYHPPTRQMYITMDVGKY 398

HSP 3 Score: 213.4 bits (542), Expect = 8.8e-52
Identity = 120/254 (47.24%), Postives = 165/254 (64.96%), Query Frame = 1


Query: 232 QDGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNG 291
           +DG++DR KA+LVAK FTQ+YGIDY ETF+ VAKLNT I +L   + K++ +  +     
Sbjct: 25  EDGSIDRFKAQLVAKGFTQSYGIDYEETFALVAKLNTEINILKDLLAKEFEIKAVGSLKY 84

Query: 292 FLNGDLMEEVYMRPPPGFKVQKSLY--------GILGCRSTDTPIEFNCKLGNSNDQVPV 351
           FL  ++      R   G  V +            +L C+ TDTP++   KLG   +  PV
Sbjct: 85  FLGMEIA-----RSKAGILVSQRKCVMDLLKETRMLRCKPTDTPMDSTTKLGTKEESAPV 144

Query: 352 DKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKGSF 411
           DK +YQ LVGKLIYLSHT PDI F +S+VSQFM  P E+H++AV RILR       +   
Sbjct: 145 DKGRYQRLVGKLIYLSHTRPDIGFSISMVSQFMNNPNEEHIEAVYRILR--SSAEAEFRA 204

Query: 412 MSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEID-PFIKE 471
           M+ GIC+E+WL+++L +L    E P+K+FCDN++AISIA NPV HDRTK+VEID  FIKE
Sbjct: 205 MAHGICEEMWLRRLLKELRIMIEEPMKMFCDNQSAISIAKNPVHHDRTKHVEIDRHFIKE 264

Query: 472 ILDSGSICIPYIPS 477
            ++ G I + ++P+
Sbjct: 265 KIEGGVIKLLHLPT 271

[Close]

BLAST of Cucsa.032580 vs. NCBI nr
Match: gi|307136173|gb|ADN34014.1| (reverse transcriptase [Cucumis melo subsp. melo])

HSP 1 Score: 204.1 bits (518), Expect = 5.3e-49
Identity = 103/155 (66.45%), Postives = 118/155 (76.13%), Query Frame = 1


Query: 258 ETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGFLNGDLMEEVYMRPPPGFKVQKSLY- 317
           + FSPVAKLNTV  L  VAVNKDWPL QLD KN FLNG L+EEVYM PPP F+ Q   + 
Sbjct: 233 KNFSPVAKLNTVKDLS-VAVNKDWPLNQLDFKNAFLNGGLVEEVYMSPPPSFEAQFGQHI 292

Query: 318 ----------GILGCRSTDTPIEFNCKLGNSNDQVPVDKEQYQHLVGKLIYLSHTHPDIS 377
                     G+ GC   DTPIEFNC LGNS+DQVP+DK++YQ LVGKL +LSHT PDIS
Sbjct: 293 KYTLELLTKTGMFGCHPADTPIEFNCTLGNSDDQVPIDKDKYQRLVGKLNHLSHTRPDIS 352

Query: 378 FVVSVVSQFMQAPYEKHMKAVNRILRYLKITPGKG 402
           F+VSVVSQF+QAPYE+HM+A+ RILRYLK TPG G
Sbjct: 353 FIVSVVSQFIQAPYEEHMEAIKRILRYLKTTPGTG 386

[Close]

BLAST of Cucsa.032580 vs. NCBI nr
Match: gi|307136173|gb|ADN34014.1| (reverse transcriptase [Cucumis melo subsp. melo])

HSP 1 Score: 40.0 bits (92), Expect = 1.3e+01
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 1


Query: 26 NEKIKIVDGSLAPIAGKGQILGHPNFTYMKYYFSHLFSK--IDVSSLSCDV 75
          NEKI+I D SLAPIAGKGQI+    F+          S   + +S ++C++
Sbjct: 18 NEKIRIADSSLAPIAGKGQIVLFDGFSLQNVLHVPKLSSNLLSISKITCEL 68

HSP 2 Score: 203.4 bits (516), Expect = 9.1e-49
Identity = 118/259 (45.56%), Postives = 164/259 (63.32%), Query Frame = 1


Query: 233 DGTLDRHKARLVAKEFTQTYGIDYSETFSPVAKLNTVIVLLYVAVNKDWPLYQLDVKNGF 292
           +G ++ +KA+LVAK +TQ YGIDY ETF+ VAK+N V VLL +  N DWPL + DVKN F
Sbjct: 28  NGLIEWYKAKLVAKGYTQAYGIDYQETFAXVAKMNFVRVLLSLTANLDWPLQKFDVKNVF 87

Query: 293 LNGDLMEEVYMRPPPGF----------KVQKSLYGILGCRSTDTPIEFNCKLGNSNDQVP 352
           L+G+L EEV+M  P GF          +++KSLYG        TPI  N +L    + +P
Sbjct: 88  LHGNL-EEVFMDLPLGFEGKFSSEKDCRLKKSLYG--------TPINQNHQLDFMTEGIP 147

Query: 353 VDKEQYQHLVGKLIYLSHTHPDISFVVSVVSQFMQAPYEKH----MKAVNRILRYLKITP 412
           VDK +YQ LVG+LIYLSHT PDI++ +S+ S               ++  + +       
Sbjct: 148 VDKGRYQRLVGRLIYLSHTRPDIAYAISMRSTLGYCTLVDDNFVTWRSKKKHVVVRSSVE 207

Query: 413 GKGSFMSLGICDEIWLQKVLSDLHQERETPLKLFCDNKAAISIANNPVQHDRTKNVEIDP 472
            +   M+LGIC+ +WL+ +L +L    E P++L+CDNKAA+SIA+N VQH++TK+VEID 
Sbjct: 208 AEFQTMALGICELMWLKGLLRELQVNLENPMRLYCDNKAAVSIAHNLVQHNKTKHVEIDR 267

Query: 473 -FIKEILDSGSICIPYIPS 477
            FIKE +DSG IC  +I S
Sbjct: 268 YFIKEKIDSGLICTLFIAS 277

The following BLAST results are available for this feature:

BLAST of Cucsa.032580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	4.5e-16	47.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	6.6e-15	46.07	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	2.5e-06	28.57	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of Cucsa.032580 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RJF7_9ROSA	1.7e-62	50.79	E3 ubiquitin-protein ligase listerin OS=Morus notabilis GN=L484_003308 PE=4 SV=1	[more]
A5AD04_VITVI	3.5e-55	47.50	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033522 PE=4 SV=1	[more]
A5AD04_VITVI	5.6e-05	54.17	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033522 PE=4 SV=1	[more]
E5GC16_CUCME	3.7e-49	66.45	Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GC16_CUCME	9.3e+00	41.18	Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cucsa.032580 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	3.2e-20	47.06	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.4e-07	28.57	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	7.7e-06	59.09	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

BLAST of Cucsa.032580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703092620\|ref\|XP_010094679.1\|	2.5e-62	50.79	E3 ubiquitin-protein ligase listerin [Morus notabilis]	[more]
gi\|147866235\|emb\|CAN82041.1\|	5.0e-55	47.50	hypothetical protein VITISV_033522 [Vitis vinifera]	[more]
gi\|147866235\|emb\|CAN82041.1\|	8.0e-05	54.17	hypothetical protein VITISV_033522 [Vitis vinifera]	[more]
gi\|307136173\|gb\|ADN34014.1\|	5.3e-49	66.45	reverse transcriptase [Cucumis melo subsp. melo]	[more]
gi\|307136173\|gb\|ADN34014.1\|	1.3e+01	41.18	reverse transcriptase [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.032580.1	Cucsa.032580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 230..313 score: 3.9
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 178..401 score: 3.3E-99coord: 1..158 score: 3.3
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 178..401 score: 3.3E-99coord: 1..158 score: 3.3
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 223..454 score: 1.51

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.032580	Melon (DHL92) v3.6.1	cgymedB002
Cucsa.032580	Silver-seed gourd	carcgyB0048
Cucsa.032580	Silver-seed gourd	carcgyB0730
Cucsa.032580	Cucumber (Chinese Long) v3	cgycucB006
Cucsa.032580	Watermelon (97103) v2	cgywmbB003
Cucsa.032580	Wax gourd	cgywgoB003
Cucsa.032580	Cucurbita maxima (Rimu)	cgycmaB0007
Cucsa.032580	Cucurbita maxima (Rimu)	cgycmaB0012
Cucsa.032580	Cucurbita moschata (Rifu)	cgycmoB0006
Cucsa.032580	Cucurbita moschata (Rifu)	cgycmoB0012
Cucsa.032580	Wild cucumber (PI 183967)	cgycpiB003
Cucsa.032580	Cucumber (Chinese Long) v2	cgycuB003
Cucsa.032580	Melon (DHL92) v3.5.1	cgymeB002
Cucsa.032580	Watermelon (Charleston Gray)	cgywcgB003
Cucsa.032580	Watermelon (97103) v1	cgywmB002
Cucsa.032580	Cucurbita pepo (Zucchini)	cgycpeB0005
Cucsa.032580	Cucurbita pepo (Zucchini)	cgycpeB0007
Cucsa.032580	Bottle gourd (USVL1VR-Ls)	cgylsiB003