Cucsa.032260 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.032260
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description50S ribosomal L9
Locationscaffold00429 : 1625038 .. 1627373 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCATCAGCCCAATTGCCAAAAGGAAAGGAAAGAAAAaTACTAAATTAAATAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGGTAATTCCACCTTTTTTtTTTTtCTACTCCAGTTTTGCTCTTTCTTCTTCCTCACCCACCTGGTTTTGTGTTCATGCACGTCTTAAAAGCTTTTGTGGCTCTAATTTTTCCATTTCCTTATACAGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAGTGAGTATGTGACTTCACTTTTTTTATTCTTTTAGTTTTGATGTCTAACTGTACATTTTTATGGACAGTGAATTGAATATTTCTTACTTTGTTGTTTAAAAAGAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGGTATGTCTCTTCAATTTGGATCACTCCAGTTACTTTTGATTGTTTTTACATACGTGTTCTGGTGTTCATTGATTAGTTTTAGTTTGTTGTTtCTTCCCAATTGCAAAGAGAGGGGTTGGGGAGAAGACAAATTAATTTAGATTACAGTAAATCCTGCTTCTTTTTACTTGCTAATGGTTGATGTACTTTTTTTtGGGTTTGATTTAAAATTTTTAGCAACCCACATGACAACACATTTGAGTGGTATGAAAATTCATAATCTTTAGTTTAACCAAAGTGTGGGGACTTGGTGGAGTATAGGCTGATTGATTTTGCTGTCATAGCTTTGTTTTCTCATGTTGGGTGTATCTCCATAGTAGAGGACTCAGATGGGTTTCACACTTTTCTATCATTTCAATTTTTTtGAATTTAGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTTTGTAACTTCACTTTTTATCCAATTTGTTTGAAGTTGTATACTTAGGTTTGGAACATTTTGGATACCTTGACATTCCTTGATTCATTCAATATTTTATTAGCTATAATTGATGCATGACGTTTTTTTAGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTAGGCATTGAAAGATACTTTTCTACTTGTTGAAATGAGAATTTAAATGGTTAGTTATTTATTTATTCCTCAGGTTAGTTGATCTTTTTGAGGTGTGAAACCTTAGAGTATCATAATGTGAAGTTTGAGAATAGGACGGATGTTTTGTGCAAAGTGTAAGCTAGGATTTCAATTGAACTCTTCTCTTCCTTTTTTTtCCTTTGGGGGGTGGGAGGGTGGTTGGCACCTGGTTGAATAAACCGGAGTCTTGTTATCGGCGGTCTTGGGAGTTTGGGGTTAACCAAGAAGTTGTGGGTCCAACGACTGAAAAACATCACTTTCATTTTTTATTAACTTCTTTCATTGTTAACCCACGGCCCAAACTTAACAACTCCCCACGTCTTTTACCAATAGATATAGACCTATTtTTtCTTTTTtAATGTCGATCTAAGCATTTCATTTTTCTTTTCCGGGTCAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAAAAAGTGGTAAACGCTATCTCTCACGTTATGGTGCCTCTGTCTTGGATTTCTTTAGATCGCTAGGCCTTTCAGACTTTTAGTTATTGAGTTGGCTGTTTGCTGGTTCCTCAATGATTGAATTAAAGCTATTTGCTTAACAATATAATGTATTCACACTCTTTGACAACATCAACGTGATAATATATGCGTTGTTGAATTAATTTTCTCTTCTTCTCATTGCATACACTAAGGAGTAAATCGAATTGATCTTCTGCATTTGAATTTA

mRNA sequence

CCCATCAGCCCAATTGCCAAAAGGAAAGGAAAGAAAAATACTAAATTAAATAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAAAAAGTGGTAAACGCTATCTCTCACGTTATGGTGCCTCTGTCTTGGATTTCTTTAGATCGCTAGGCCTTTCAGACTTTTAGTTATTGAGTTGGCTGTTTGCTGGTTCCTCAATGATTGAATTAAAGCTATTTGCTTAACAATATAATGTATTCACACTCTTTGACAACATCAACGTGATAATATATGCGTTGTTGAATTAATTTTCTCTTCTTCTCATTGCATACACTAAGGAGTAAATCGAATTGATCTTCTGCATTTGAATTTA

Coding sequence (CDS)

ATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAA

Protein sequence

MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK*
Homology
[Close]
BLAST of Cucsa.032260 vs. Swiss-Prot
Match: RL9_ANADF (50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplI PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-10
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 1 

Query: 42  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK GE V V PGY RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGELVDVKPGYGRNFLLPRGLAVLANPKNVRELEHQ---------- 60

Query: 102 VVKVVTLTKEDKMKEYEKA-ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 161
             K +   K  KMK   +A A+RL    + L R + ++             L  SVT  D
Sbjct: 61  --KAIATAKAAKMKASAQAVAKRLAETPITLSRKVGEQD-----------KLYGSVTAMD 120

Query: 162 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
            VAE      +QI    ++LA P+   G++EVP++    +    GKV    KVKV ++
Sbjct: 121 -VAEALAARGLQIDRRAIDLAEPIKTTGDFEVPVKLHSEV---VGKV----KVKVEAE 147

[Close]
BLAST of Cucsa.032260 vs. Swiss-Prot
Match: RL9_ANADE (50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplI PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 1 

Query: 42  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK G+ V V PGY RN+L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNYLLPRGLAVSANPKNVKELEHQ---------- 60

Query: 102 VVKVVTLTKEDKMKEYEKA-ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 161
             K V   K  K+K   +A A+RL    + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 162 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVK 215
            VAE      VQ+   ++ L  P+   GE+EVP++    +    GKV  T++ +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTLGEFEVPVKLHSEV---AGKVKVTVEAE 147

[Close]
BLAST of Cucsa.032260 vs. Swiss-Prot
Match: RL9_HALOH (50S ribosomal protein L9 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplI PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 1 

Query: 42  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 101
           ++VIL   ++KLGK G+ V V+ GY RN+L+P+ LA          +KE+ +I       
Sbjct: 1   MKVILKKDVKKLGKKGDVVSVSDGYARNYLIPRGLAEEATRGNITQLKEKEKI------- 60

Query: 102 VVKVVTLTKEDKMKEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDI 161
                   KE K ++  + AR + SK       ++KEKF  +    E   L  SVT  DI
Sbjct: 61  --------KEKKHQQKIEEARDMASK-------LEKEKFVIKVKSGENGRLFGSVTTKDI 120

Query: 162 VAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKV 216
            AE  ++   +I    ++L   + A G Y VP++  +        V  TLK++V
Sbjct: 121 -AETVKKAGYKIDKRKIDLDDNIKALGTYRVPVKIFED-------VVATLKIQV 144

[Close]
BLAST of Cucsa.032260 vs. Swiss-Prot
Match: RL9_ANAD2 (50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplI PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-09
Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 1 

Query: 42  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK G+ V V PGY RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNFLLPRGLAVTANPKNVKELEHQ---------- 60

Query: 102 VVKVVTLTKEDKMKEYEKA-ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 161
             K V   K  K+K   +A A+RL    + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 162 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVK 215
            VAE      VQ+   ++ L  P+   GE+EVP++    +    GKV  T++ +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTVGEFEVPVKLHSEV---AGKVKVTVEAE 147

[Close]
BLAST of Cucsa.032260 vs. Swiss-Prot
Match: RL9_ANASK (50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain K) GN=rplI PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-09
Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 1 

Query: 42  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 101
           +++IL   +E LGK G+ V V PGY RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNFLLPRGLAVTANPKNVKELEHQ---------- 60

Query: 102 VVKVVTLTKEDKMKEYEKA-ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 161
             K V   K  K+K   +A A+RL    + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 162 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVK 215
            VAE      VQ+   ++ L  P+   GE+EVP++    +    GKV  T++ +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTVGEFEVPVKLHSEV---AGKVKVTVEAE 147

[Close]
BLAST of Cucsa.032260 vs. TrEMBL
Match: A0A0A0LAH8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238230 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 3.2e-117
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 71  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 130

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA
Sbjct: 131 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 190

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 191 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 250

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
           ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 251 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 288

[Close]
BLAST of Cucsa.032260 vs. TrEMBL
Match: A0A061FWD1_THECC (Ribosomal protein L9/RNase H1 isoform 3 OS=Theobroma cacao GN=TCM_043864 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.6e-79
Identity = 155/218 (71.10%), Postives = 183/218 (83.94%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MA +Q+ RNALR II+DT +   D++MQPLLF+ QGVR+RKLEVILTTSIEKLGKAGETV
Sbjct: 1   MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           +VAPGYFRNHLMPK+LAVPNI+K+ +LI+EQR+IYQP EEE V+VV  T EDK KEYEKA
Sbjct: 61  RVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQP-EEEEVQVVAKTVEDKTKEYEKA 120

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           A RL + +LVLRR ID EKFR RA KD+P+ L+S VT D++VAEVARQ  V I PENL L
Sbjct: 121 ANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDELVAEVARQLCVHIEPENLYL 180

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
            +PLS  GE+EVPLR PKSIPLPEGKV+WTL+VK+R K
Sbjct: 181 PTPLSTFGEFEVPLRLPKSIPLPEGKVHWTLQVKIRGK 217

[Close]
BLAST of Cucsa.032260 vs. TrEMBL
Match: A0A061FR41_THECC (Ribosomal protein L9/RNase H1 isoform 1 OS=Theobroma cacao GN=TCM_043864 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.6e-79
Identity = 154/218 (70.64%), Postives = 183/218 (83.94%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MA +Q+ RNALR II+DT +   D++MQPLLF+ QGVR+RKLEVILTTSIEKLGKAGETV
Sbjct: 1   MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           +VAPGYFRNHLMPK+LAVPNI+K+ +LI+EQR+IYQP EEE V+VV  T EDK KEYEKA
Sbjct: 61  RVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQP-EEEEVQVVAKTVEDKTKEYEKA 120

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           A RL + +LVLRR ID EKFR RA KD+P+ L+S VT D++VAEVARQ  V I PENL L
Sbjct: 121 ANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDELVAEVARQLCVHIEPENLYL 180

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
            +PLS  GE+EVPLR PKSIPLPEGKV+WTL+VK+R +
Sbjct: 181 PTPLSTFGEFEVPLRLPKSIPLPEGKVHWTLQVKIREE 217

[Close]
BLAST of Cucsa.032260 vs. TrEMBL
Match: W9S1W8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011867 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.3e-78
Identity = 155/206 (75.24%), Postives = 175/206 (84.95%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MA IQ  RNALR II +  LH SD+MM PLLF  QGVRHRKLEVILTT+IEKLGKAGETV
Sbjct: 782 MAYIQNGRNALRQIIMEMNLHSSDRMMNPLLFVSQGVRHRKLEVILTTNIEKLGKAGETV 841

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           KVAPG+FRNHLMPK+LAVPNIEK+AYLI+EQ +I+ P EE+V   V +++EDKMKEYEKA
Sbjct: 842 KVAPGHFRNHLMPKLLAVPNIEKFAYLIREQHKIFPPEEEKVEAKVNMSEEDKMKEYEKA 901

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           A RLDS +LVLRRLI+ EKFR+R+ KDEP+ LQS+VT DDIV EVARQ SVQIA ENL+L
Sbjct: 902 AERLDSTRLVLRRLINIEKFRSRSTKDEPIELQSAVTKDDIVTEVARQLSVQIAHENLHL 961

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGK 207
            SPLS  GEYEVPLRFPKSIPLP GK
Sbjct: 962 PSPLSTVGEYEVPLRFPKSIPLPPGK 987

[Close]
BLAST of Cucsa.032260 vs. TrEMBL
Match: U5FY93_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s15210g PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 5.1e-78
Identity = 153/219 (69.86%), Postives = 181/219 (82.65%), Query Frame = 1 

Query: 1   MACIQYCRNALRNII-KDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGET 60
           MACIQ+ RNALR II K+T L  SD  + PLL++ QGVR++KLEVILTTSIEKLGKAG+T
Sbjct: 115 MACIQHSRNALRQIIAKETNLKSSDGAINPLLYACQGVRYKKLEVILTTSIEKLGKAGQT 174

Query: 61  VKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEK 120
           VKVAPG+FRNHLMPK+LAVPNIEK+A+LI+EQR+IYQP EEE VKVV  T EDKMKEYE 
Sbjct: 175 VKVAPGHFRNHLMPKLLAVPNIEKFAHLIREQRKIYQPEEEEEVKVVKETMEDKMKEYET 234

Query: 121 AARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLN 180
           AA+RL   QL  R  I+  KFR R +KD+P+ + S VT DDI+ EV RQF+VQI P+N++
Sbjct: 235 AAKRLVKAQLAFRAGINTAKFRARESKDDPIEILSPVTKDDILKEVTRQFNVQIEPDNVH 294

Query: 181 LASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
           L SPL+A GE+EVPLRFPKSIPLPEGKV WTLKVK+R K
Sbjct: 295 LPSPLTALGEFEVPLRFPKSIPLPEGKVKWTLKVKIRGK 333

[Close]
BLAST of Cucsa.032260 vs. TAIR10
Match: AT5G53070.1 (AT5G53070.1 Ribosomal protein L9/RNase H1)

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-69
Identity = 135/219 (61.64%), Postives = 173/219 (79.00%), Query Frame = 1 

Query: 1   MACIQYCRNALRNII-KDTKLHPSDQMMQ-PLLFSGQGVRHRKLEVILTTSIEKLGKAGE 60
           MA +   RN +R+++ + T  H  +  +  PLLF+ QGVR+RKLEVILTT IEKLGKAGE
Sbjct: 1   MAYVGQSRNVIRHVVSRGTAYHKYENAIHHPLLFACQGVRYRKLEVILTTGIEKLGKAGE 60

Query: 61  TVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVE-EEVVKVVTLTKEDKMKEY 120
           TVKVAPGYFRNHLMPK+LAVPNI+KYAYLI+EQR++Y   E +E VKVV  T E + KEY
Sbjct: 61  TVKVAPGYFRNHLMPKLLAVPNIDKYAYLIREQRKMYNHEEVKEEVKVVHKTSEVQTKEY 120

Query: 121 EKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPEN 180
           EKAA+RL +  LVLR+L+DKEKF+ R++KD+   +Q+ +T ++IV+EVARQ  V+I P+N
Sbjct: 121 EKAAKRLANANLVLRKLVDKEKFKNRSSKDDKPDVQTPITKEEIVSEVARQLCVKIDPDN 180

Query: 181 LNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVR 217
           + LA+PL   GEYEVPL+FPK+IPLP+G V W LKVKVR
Sbjct: 181 VVLAAPLETFGEYEVPLKFPKTIPLPQGTVQWILKVKVR 219

[Close]
BLAST of Cucsa.032260 vs. NCBI nr
Match: gi|449456985|ref|XP_004146229.1| (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 4.6e-117
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
           ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]
BLAST of Cucsa.032260 vs. NCBI nr
Match: gi|700202524|gb|KGN57657.1| (hypothetical protein Csa_3G238230 [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 4.6e-117
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 71  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 130

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA
Sbjct: 131 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 190

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 191 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 250

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
           ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 251 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 288

[Close]
BLAST of Cucsa.032260 vs. NCBI nr
Match: gi|659111934|ref|XP_008455982.1| (PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo])

HSP 1 Score: 407.1 bits (1045), Expect = 1.9e-110
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MACIQY RNALR IIKDT LHPSDQMMQPLLF+GQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGRNALRKIIKDTTLHPSDQMMQPLLFTGQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           KVAPGYFRNHLMPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           A+RLD KQLVLRRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 121 AKRLDCKQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
            SPLSACGEYEV LRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 181 PSPLSACGEYEVALRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]
BLAST of Cucsa.032260 vs. NCBI nr
Match: gi|1009169722|ref|XP_015865819.1| (PREDICTED: 50S ribosomal protein L9 [Ziziphus jujuba])

HSP 1 Score: 317.4 bits (812), Expect = 2.0e-83
Identity = 158/219 (72.15%), Postives = 189/219 (86.30%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MA IQY RNA+R IIK+T +H SD+MMQPLL+  QG+RHRKLEVILT +IEKLGKAGETV
Sbjct: 1   MAYIQYGRNAIRQIIKETNVHSSDRMMQPLLYVSQGIRHRKLEVILTRNIEKLGKAGETV 60

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEE-EVVKVVTLTKEDKMKEYEK 120
           KVAPG+FRNHLMPK+LAVPNI+KYAYLI+EQ +IY P +E E VKVV +++EDK+KEYEK
Sbjct: 61  KVAPGHFRNHLMPKLLAVPNIDKYAYLIREQHKIYPPEKEKEEVKVVAVSEEDKIKEYEK 120

Query: 121 AARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLN 180
           AA+RLD  +LV+RRLI+ EKFR+R+ KDEP+ ++  VT DDIVAEVARQ  VQ+APENL 
Sbjct: 121 AAKRLDKARLVVRRLINIEKFRSRSTKDEPIEVREPVTKDDIVAEVARQLCVQLAPENLQ 180

Query: 181 LASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
           L+SPLS  GEYEVP RFPKSIPLP GKV+WTL VK+R+K
Sbjct: 181 LSSPLSTVGEYEVPFRFPKSIPLPAGKVHWTLSVKLRTK 219

[Close]
BLAST of Cucsa.032260 vs. NCBI nr
Match: gi|590566697|ref|XP_007010309.1| (Ribosomal protein L9/RNase H1 isoform 3 [Theobroma cacao])

HSP 1 Score: 303.9 bits (777), Expect = 2.3e-79
Identity = 155/218 (71.10%), Postives = 183/218 (83.94%), Query Frame = 1 

Query: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60
           MA +Q+ RNALR II+DT +   D++MQPLLF+ QGVR+RKLEVILTTSIEKLGKAGETV
Sbjct: 1   MAYLQHGRNALRQIIRDTNVQNQDRLMQPLLFACQGVRYRKLEVILTTSIEKLGKAGETV 60

Query: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120
           +VAPGYFRNHLMPK+LAVPNI+K+ +LI+EQR+IYQP EEE V+VV  T EDK KEYEKA
Sbjct: 61  RVAPGYFRNHLMPKLLAVPNIDKFVHLIREQRKIYQP-EEEEVQVVAKTVEDKTKEYEKA 120

Query: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180
           A RL + +LVLRR ID EKFR RA KD+P+ L+S VT D++VAEVARQ  V I PENL L
Sbjct: 121 ANRLVNARLVLRRFIDVEKFRARATKDDPVELRSPVTKDELVAEVARQLCVHIEPENLYL 180

Query: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 219
            +PLS  GE+EVPLR PKSIPLPEGKV+WTL+VK+R K
Sbjct: 181 PTPLSTFGEFEVPLRLPKSIPLPEGKVHWTLQVKIRGK 217

The following BLAST results are available for this feature:
BLAST of Cucsa.032260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL9_ANADF8.4e-1032.0250S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplI PE=3 S... [more]
RL9_ANADE1.1e-0930.4650S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplI... [more]
RL9_HALOH1.4e-0930.4650S ribosomal protein L9 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM... [more]
RL9_ANAD22.5e-0930.4650S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC B... [more]
RL9_ANASK2.5e-0930.4650S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain K) GN=rplI PE=3 SV=1[more]
BLAST of Cucsa.032260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAH8_CUCSA3.2e-117100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238230 PE=4 SV=1[more]
A0A061FWD1_THECC1.6e-7971.10Ribosomal protein L9/RNase H1 isoform 3 OS=Theobroma cacao GN=TCM_043864 PE=4 SV... [more]
A0A061FR41_THECC4.6e-7970.64Ribosomal protein L9/RNase H1 isoform 1 OS=Theobroma cacao GN=TCM_043864 PE=4 SV... [more]
W9S1W8_9ROSA1.3e-7875.24Uncharacterized protein OS=Morus notabilis GN=L484_011867 PE=4 SV=1[more]
U5FY93_POPTR5.1e-7869.86Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s15210g PE=4 SV=1[more]
BLAST of Cucsa.032260 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53070.11.7e-6961.64 Ribosomal protein L9/RNase H1[more]
BLAST of Cucsa.032260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456985|ref|XP_004146229.1|4.6e-117100.00PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis sativus][more]
gi|700202524|gb|KGN57657.1|4.6e-117100.00hypothetical protein Csa_3G238230 [Cucumis sativus][more]
gi|659111934|ref|XP_008455982.1|1.9e-11095.41PREDICTED: 50S ribosomal protein L9, chloroplastic [Cucumis melo][more]
gi|1009169722|ref|XP_015865819.1|2.0e-8372.15PREDICTED: 50S ribosomal protein L9 [Ziziphus jujuba][more]
gi|590566697|ref|XP_007010309.1|2.3e-7971.10Ribosomal protein L9/RNase H1 isoform 3 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000244Ribosomal_L9
IPR009027Ribosomal_L9/RNase_H1_N
IPR020069Ribosomal_L9_C
IPR020070Ribosomal_L9_N
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.032260.1Cucsa.032260.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000244Ribosomal protein L9PANTHERPTHR2136850S RIBOSOMAL PROTEIN L9coord: 1..204
score: 5.5E
IPR009027Ribosomal protein L9/RNase H1, N-terminalunknownSSF55658L9 N-domain-likecoord: 42..95
score: 2.96
IPR020069Ribosomal protein L9, C-terminalGENE3DG3DSA:3.10.430.100coord: 138..199
score: 3.
IPR020069Ribosomal protein L9, C-terminalunknownSSF55653Ribosomal protein L9 C-domaincoord: 115..215
score: 1.8
IPR020070Ribosomal protein L9, N-terminalGENE3DG3DSA:3.40.5.10coord: 43..92
score: 1.2
IPR020070Ribosomal protein L9, N-terminalPFAMPF01281Ribosomal_L9_Ncoord: 43..79
score: 1.3
NoneNo IPR availablePANTHERPTHR21368:SF21SUBFAMILY NOT NAMEDcoord: 1..204
score: 5.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.032260Cla004266Watermelon (97103) v1cgywmB002
Cucsa.032260Csa3G238230Cucumber (Chinese Long) v2cgycuB003
Cucsa.032260MELO3C019369Melon (DHL92) v3.5.1cgymeB002
Cucsa.032260ClCG05G009030Watermelon (Charleston Gray)cgywcgB003
Cucsa.032260CSPI03G19700Wild cucumber (PI 183967)cgycpiB003
Cucsa.032260CmaCh18G013230Cucurbita maxima (Rimu)cgycmaB0010
Cucsa.032260CmoCh18G013530Cucurbita moschata (Rifu)cgycmoB0009
Cucsa.032260Lsi05G001110Bottle gourd (USVL1VR-Ls)cgylsiB003
Cucsa.032260MELO3C019369.2Melon (DHL92) v3.6.1cgymedB002
Cucsa.032260CsaV3_3G019750Cucumber (Chinese Long) v3cgycucB006
Cucsa.032260Cla97C05G091350Watermelon (97103) v2cgywmbB003
Cucsa.032260Bhi01G001126Wax gourdcgywgoB003
Cucsa.032260Carg20333Silver-seed gourdcarcgyB0615
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.032260Silver-seed gourdcarcgyB0614
Cucsa.032260Silver-seed gourdcarcgyB1104
Cucsa.032260Cucumber (Chinese Long) v3cgycucB007
Cucsa.032260Watermelon (97103) v2cgywmbB002
Cucsa.032260Wax gourdcgywgoB002
Cucsa.032260Cucumber (Gy14) v1cgycgyB000
Cucsa.032260Cucurbita maxima (Rimu)cgycmaB0008
Cucsa.032260Cucurbita maxima (Rimu)cgycmaB0006
Cucsa.032260Cucurbita maxima (Rimu)cgycmaB0009
Cucsa.032260Cucurbita moschata (Rifu)cgycmoB0005
Cucsa.032260Cucurbita moschata (Rifu)cgycmoB0007
Cucsa.032260Cucurbita moschata (Rifu)cgycmoB0008
Cucsa.032260Cucurbita moschata (Rifu)cgycmoB0011
Cucsa.032260Wild cucumber (PI 183967)cgycpiB004
Cucsa.032260Cucumber (Chinese Long) v2cgycuB004
Cucsa.032260Melon (DHL92) v3.5.1cgymeB001
Cucsa.032260Watermelon (Charleston Gray)cgywcgB002
Cucsa.032260Watermelon (97103) v1cgywmB006
Cucsa.032260Cucurbita pepo (Zucchini)cgycpeB0004
Cucsa.032260Cucurbita pepo (Zucchini)cgycpeB0003
Cucsa.032260Cucurbita pepo (Zucchini)cgycpeB0006
Cucsa.032260Cucurbita pepo (Zucchini)cgycpeB0011
Cucsa.032260Bottle gourd (USVL1VR-Ls)cgylsiB002
Cucsa.032260Melon (DHL92) v3.6.1cgymedB001