Cucsa.031900 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.031900
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	scaffold00429 : 1123180 .. 1123846 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATAGAAAAGGATGAAGAACTTCAGAAAATTATTAAGAAGTTGGAAATGAATCATGAGGAAACCAGCAAATATCAGTGGGAAAAAGGAAGATTATTATACAAAGGTAGGGTGGTGCTTCCTAAAACATCCTCATTGATACCCAGCCTTCTTCACACCTTCCATGATTCGATTCTAGGGGGTCATTCCGGAGTTTTAAGGACATATAAACGAATGAGTGGAGAATTGCATTGGCAAGGCATGAAGACTGATGTAAAGAAATATGTGCAGCAGTGTGAGATCTGTCAGAGGAACAAGTTTGAAGCCACCAAACCAGTGGGAGTTTTGCAGCCTCTGCCCATTCCAGAAAGAATTTTAGAAGACTGGACCATGGACTTTATAGAGGGCGTACTGACAGCAGGGGAGTGAATGTTATTATGGTAATCGTGGACATGCTTAGTAAGTATGCATACTTCATAACTCTTAAACACCCCTTCTCAGCTAAACAGGTGGCTGTTTTGTTTATAGATAGGGTCGTGAGTAAGCATGGAATTCCAAAATCCCTAATATCAGGCCGAGACAAAGTGTTCCTTAGCAACTTCTGGAAGGAATTGTTCGCTTCTATGGGAACCATCTTGAAGAGAAGCACAACCTTTCACCCGCAAACAGATGACAGACTGAAAGA

mRNA sequence

atggagatagaaaaggatgaagaacttcagaaaattattaagaagttggaaatgaatcatgaggaaaccagcaaatatcagtgggaaaaaggaagattattatacaaaggtagggtggtgcttcctaaaacatcctcattgatacccagccttcttcacaccttccatgattcgattctagggggtcattccggagttttaaggacatataaacgaatgagtggagaattgcattggcaaggcatgaagactgatgtaaagaaatatgtgcagcagtgtgagatctgtcagaggaacaagtttgaagccaccaaaccagtgggagttttgcagcctctgcccattccagaaagaattttagaagactggaccatggactttatagagggcgtactgacagcaggggataagtatgcatacttcataactcttaaacaccccttctcagctaaacaggtggctgttttgtttatagatagggtcgtgagtaagcatggaattccaaaatccctaatatcaggccgagacaaagtgttccttagcaacttctggaaggaattgttcgcttctatgggaaccatcttgaagagaagcacaacctttcacccgcaaacagatgacagactgaaaga

Coding sequence (CDS)

ATGGAGATAGAAAAGGATGAAGAACTTCAGAAAATTATTAAGAAGTTGGAAATGAATCATGAGGAAACCAGCAAATATCAGTGGGAAAAAGGAAGATTATTATACAAAGGTAGGGTGGTGCTTCCTAAAACATCCTCATTGATACCCAGCCTTCTTCACACCTTCCATGATTCGATTCTAGGGGGTCATTCCGGAGTTTTAAGGACATATAAACGAATGAGTGGAGAATTGCATTGGCAAGGCATGAAGACTGATGTAAAGAAATATGTGCAGCAGTGTGAGATCTGTCAGAGGAACAAGTTTGAAGCCACCAAACCAGTGGGAGTTTTGCAGCCTCTGCCCATTCCAGAAAGAATTTTAGAAGACTGGACCATGGACTTTATAGAGGGCGTACTGACAGCAGGGGATAAGTATGCATACTTCATAACTCTTAAACACCCCTTCTCAGCTAAACAGGTGGCTGTTTTGTTTATAGATAGGGTCGTGAGTAAGCATGGAATTCCAAAATCCCTAATATCAGGCCGAGACAAAGTGTTCCTTAGCAACTTCTGGAAGGAATTGTTCGCTTCTATGGGAACCATCTTGAAGAGAAGCACAACCTTTCACCCGCAAACAGATGACAGACTGAAAGA

Protein sequence

MEIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILGGHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILEDWTMDFIEGVLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPKSLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTDDRLKX

Homology

[Close]

BLAST of Cucsa.031900 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 63/218 (28.90%), Postives = 102/218 (46.79%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLY-KGRVVLPKTSSLIPSLLHTFHDSIL 61
            E   D +L  ++   +   EE    Q + G L+  K +++LP  + L  +++  +H+   
Sbjct: 867  EYTNDTKLLNLLNNEDKRVEEN--IQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGK 926

Query: 62   GGHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERIL 121
              H G+      +     W+G++  +++YVQ C  CQ NK    KP G LQP+P  ER  
Sbjct: 927  LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 986

Query: 122  EDWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIP 181
            E  +MDFI              V+    K A  +      +A+Q A +F  RV++  G P
Sbjct: 987  ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1046

Query: 182  KSLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            K +I+  D +F S  WK+       ++K S  + PQTD
Sbjct: 1047 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of Cucsa.031900 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 63/218 (28.90%), Postives = 102/218 (46.79%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLY-KGRVVLPKTSSLIPSLLHTFHDSIL 61
            E   D +L  ++   +   EE    Q + G L+  K +++LP  + L  +++  +H+   
Sbjct: 867  EYTNDTKLLNLLNNEDKRVEEN--IQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGK 926

Query: 62   GGHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERIL 121
              H G+      +     W+G++  +++YVQ C  CQ NK    KP G LQP+P  ER  
Sbjct: 927  LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 986

Query: 122  EDWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIP 181
            E  +MDFI              V+    K A  +      +A+Q A +F  RV++  G P
Sbjct: 987  ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1046

Query: 182  KSLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            K +I+  D +F S  WK+       ++K S  + PQTD
Sbjct: 1047 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of Cucsa.031900 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 63/218 (28.90%), Postives = 102/218 (46.79%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLY-KGRVVLPKTSSLIPSLLHTFHDSIL 61
            E   D +L  ++   +   EE    Q + G L+  K +++LP  + L  +++  +H+   
Sbjct: 867  EYTNDTKLLNLLNNEDKRVEEN--IQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGK 926

Query: 62   GGHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERIL 121
              H G+      +     W+G++  +++YVQ C  CQ NK    KP G LQP+P  ER  
Sbjct: 927  LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 986

Query: 122  EDWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIP 181
            E  +MDFI              V+    K A  +      +A+Q A +F  RV++  G P
Sbjct: 987  ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1046

Query: 182  KSLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            K +I+  D +F S  WK+       ++K S  + PQTD
Sbjct: 1047 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of Cucsa.031900 vs. Swiss-Prot
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 63/218 (28.90%), Postives = 102/218 (46.79%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLY-KGRVVLPKTSSLIPSLLHTFHDSIL 61
            E   D +L  ++   +   EE    Q + G L+  K +++LP  + L  +++  +H+   
Sbjct: 867  EYTNDTKLLNLLNNEDKRVEEN--IQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGK 926

Query: 62   GGHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERIL 121
              H G+      +     W+G++  +++YVQ C  CQ NK    KP G LQP+P  ER  
Sbjct: 927  LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 986

Query: 122  EDWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIP 181
            E  +MDFI              V+    K A  +      +A+Q A +F  RV++  G P
Sbjct: 987  ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1046

Query: 182  KSLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            K +I+  D +F S  WK+       ++K S  + PQTD
Sbjct: 1047 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of Cucsa.031900 vs. Swiss-Prot
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 63/218 (28.90%), Postives = 102/218 (46.79%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLY-KGRVVLPKTSSLIPSLLHTFHDSIL 61
            E   D +L  ++   +   EE    Q + G L+  K +++LP  + L  +++  +H+   
Sbjct: 867  EYTNDTKLLNLLNNEDKRVEEN--IQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGK 926

Query: 62   GGHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERIL 121
              H G+      +     W+G++  +++YVQ C  CQ NK    KP G LQP+P  ER  
Sbjct: 927  LIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 986

Query: 122  EDWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIP 181
            E  +MDFI              V+    K A  +      +A+Q A +F  RV++  G P
Sbjct: 987  ESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1046

Query: 182  KSLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            K +I+  D +F S  WK+       ++K S  + PQTD
Sbjct: 1047 KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTD 1082

[Close]

BLAST of Cucsa.031900 vs. TrEMBL
Match: B5U9W1_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.2e-56
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ LG
Sbjct: 1055 EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALG 1114

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 1115 GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 1174

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 1175 DISMDFIGGLPKTMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1234

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1235 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271

[Close]

BLAST of Cucsa.031900 vs. TrEMBL
Match: B5U9W2_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.2e-56
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ LG
Sbjct: 866  EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALG 925

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 926  GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 985

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 986  DISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1045

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1046 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1082

[Close]

BLAST of Cucsa.031900 vs. TrEMBL
Match: B5U9W0_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.2e-56
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ LG
Sbjct: 1055 EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALG 1114

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 1115 GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 1174

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 1175 DISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1234

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1235 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271

[Close]

BLAST of Cucsa.031900 vs. TrEMBL
Match: B5U9W4_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.2e-56
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ LG
Sbjct: 1055 EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALG 1114

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 1115 GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 1174

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 1175 DISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1234

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1235 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271

[Close]

BLAST of Cucsa.031900 vs. TrEMBL
Match: B5U9V8_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.9e-56
Identity = 108/217 (49.77%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ +G
Sbjct: 1055 EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTAIG 1114

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 1115 GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 1174

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 1175 DISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1234

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1235 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271

[Close]

BLAST of Cucsa.031900 vs. NCBI nr
Match: gi|659118472|ref|XP_008459139.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103498341 [Cucumis melo])

HSP 1 Score: 245.4 bits (625), Expect = 9.2e-62
Identity = 117/182 (64.29%), Postives = 139/182 (76.37%), Query Frame = 1


Query: 2   EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
           E+EKDEELQ II  L+ N E  + YQW+ G LLYKGR+V+ K  +LIPSLLHTFHDS+LG
Sbjct: 235 EVEKDEELQDIINILKENPEGKANYQWKSGNLLYKGRLVMSKNFTLIPSLLHTFHDSVLG 294

Query: 62  GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
           GH G L+TYKRM+GE+HW GMK DVKKYV+QCEICQRNK EA  P G+LQPLP+P  ILE
Sbjct: 295 GHLGFLKTYKRMNGEIHWMGMKNDVKKYVEQCEICQRNKTEALAPAGLLQPLPLPNLILE 354

Query: 122 DWTMDFIEGVLTAG------------DKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 172
           DWTMDFIEG+  AG             K A+FITLKHPF+AKQVA  F++ ++SKHGIP 
Sbjct: 355 DWTMDFIEGLPKAGGYDSIMVIVDRLSKMAHFITLKHPFTAKQVAEKFVEEIISKHGIPN 414

[Close]

BLAST of Cucsa.031900 vs. NCBI nr
Match: gi|729344250|ref|XP_010541181.1| (PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana])

HSP 1 Score: 232.3 bits (591), Expect = 8.0e-58
Identity = 118/217 (54.38%), Postives = 145/217 (66.82%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +D +L++I+ KL+    +  KY   +G L YK R+V+ K SS IP++L  FHDS +G
Sbjct: 1289 EIGEDSDLKEIVSKLKEGETKVGKYHLLQGMLRYKNRLVVSKHSSFIPTILAEFHDSKMG 1348

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GHSGVLRT KR+    HW GMK D+KKYV +C +CQ  K+    P G+LQPLPIPE I E
Sbjct: 1349 GHSGVLRTLKRIQELFHWVGMKADIKKYVAECAVCQSQKYSTLAPAGLLQPLPIPEHIWE 1408

Query: 122  DWTMDFIEG---------VLTAGD---KYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFIEG         VL   D   KYA+FI LKHPF+A  VA +F+  VV  HG PK
Sbjct: 1409 DISMDFIEGLPRSAGYNVVLVVVDRLSKYAHFIALKHPFTAMVVAKVFVQEVVRLHGFPK 1468

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RDKVFLSNFW ELF   GT LK ST +HPQTD
Sbjct: 1469 SIVSDRDKVFLSNFWSELFRIAGTKLKFSTAYHPQTD 1505

[Close]

BLAST of Cucsa.031900 vs. NCBI nr
Match: gi|208609055|dbj|BAG72150.1| (hypothetical protein [Lotus japonicus])

HSP 1 Score: 225.7 bits (574), Expect = 7.5e-56
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ LG
Sbjct: 1055 EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALG 1114

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 1115 GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 1174

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 1175 DISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1234

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1235 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271

[Close]

BLAST of Cucsa.031900 vs. NCBI nr
Match: gi|208609057|dbj|BAG72151.1| (hypothetical protein [Lotus japonicus])

HSP 1 Score: 225.7 bits (574), Expect = 7.5e-56
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ LG
Sbjct: 1055 EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALG 1114

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 1115 GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 1174

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 1175 DISMDFIGGLPKTMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1234

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1235 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271

[Close]

BLAST of Cucsa.031900 vs. NCBI nr
Match: gi|208609065|dbj|BAG72154.1| (hypothetical protein [Lotus japonicus])

HSP 1 Score: 225.7 bits (574), Expect = 7.5e-56
Identity = 109/217 (50.23%), Postives = 147/217 (67.74%), Query Frame = 1


Query: 2    EIEKDEELQKIIKKLEMNHEETSKYQWEKGRLLYKGRVVLPKTSSLIPSLLHTFHDSILG 61
            EI +DE  +K++++L         YQ ++GRLLYK R+VLPK S+ I ++L  FHD+ LG
Sbjct: 1055 EILEDERYRKVLQELATQGNSAVGYQLKRGRLLYKDRIVLPKGSTKILTVLKEFHDTALG 1114

Query: 62   GHSGVLRTYKRMSGELHWQGMKTDVKKYVQQCEICQRNKFEATKPVGVLQPLPIPERILE 121
            GH+G+ RTYKR+S   +W+GMK D++ YVQ+CE+CQRNK+EA  P G LQPLPIP +   
Sbjct: 1115 GHAGIFRTYKRISALFYWEGMKLDIQNYVQKCEVCQRNKYEALNPAGFLQPLPIPSQGWT 1174

Query: 122  DWTMDFIEG------------VLTAGDKYAYFITLKHPFSAKQVAVLFIDRVVSKHGIPK 181
            D +MDFI G            V+    KYA+FI L HP++AK++A +FI  VV  HG P 
Sbjct: 1175 DISMDFIGGLPKAMGKDTILVVVDRFTKYAHFIALSHPYNAKEIAEVFIKEVVRLHGFPT 1234

Query: 182  SLISGRDKVFLSNFWKELFASMGTILKRSTTFHPQTD 207
            S++S RD+VFLS FW E+F   GT LK S+ +HPQTD
Sbjct: 1235 SIVSDRDRVFLSTFWSEMFKLAGTKLKFSSAYHPQTD 1271

The following BLAST results are available for this feature:

BLAST of Cucsa.031900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TF211_SCHPO	2.3e-20	28.90	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF212_SCHPO	2.3e-20	28.90	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF21_SCHPO	2.3e-20	28.90	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF22_SCHPO	2.3e-20	28.90	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF23_SCHPO	2.3e-20	28.90	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cucsa.031900 vs. TrEMBL


Match Name	E-value	Identity	Description
B5U9W1_LOTJA	5.2e-56	50.23	Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1	[more]
B5U9W2_LOTJA	5.2e-56	50.23	Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1	[more]
B5U9W0_LOTJA	5.2e-56	50.23	Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1	[more]
B5U9W4_LOTJA	5.2e-56	50.23	Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1	[more]
B5U9V8_LOTJA	8.9e-56	49.77	Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1	[more]

BLAST of Cucsa.031900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118472\|ref\|XP_008459139.1\|	9.2e-62	64.29	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103498341 [Cucumis me...	[more]
gi\|729344250\|ref\|XP_010541181.1\|	8.0e-58	54.38	PREDICTED: uncharacterized protein LOC104814705 [Tarenaya hassleriana]	[more]
gi\|208609055\|dbj\|BAG72150.1\|	7.5e-56	50.23	hypothetical protein [Lotus japonicus]	[more]
gi\|208609057\|dbj\|BAG72151.1\|	7.5e-56	50.23	hypothetical protein [Lotus japonicus]	[more]
gi\|208609065\|dbj\|BAG72154.1\|	7.5e-56	50.23	hypothetical protein [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.031900.1	Cucsa.031900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 115..205 score: 2.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 112..206 score: 3.41
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 4..206 score: 3.0
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 4..206 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.031900	Melon (DHL92) v3.6.1	cgymedB005
Cucsa.031900	Silver-seed gourd	carcgyB0552
Cucsa.031900	Cucumber (Chinese Long) v3	cgycucB006
Cucsa.031900	Watermelon (97103) v2	cgywmbB004
Cucsa.031900	Wax gourd	cgywgoB004
Cucsa.031900	Cucurbita maxima (Rimu)	cgycmaB0005
Cucsa.031900	Cucurbita moschata (Rifu)	cgycmoB0004
Cucsa.031900	Wild cucumber (PI 183967)	cgycpiB003
Cucsa.031900	Cucumber (Chinese Long) v2	cgycuB003
Cucsa.031900	Melon (DHL92) v3.5.1	cgymeB003
Cucsa.031900	Watermelon (Charleston Gray)	cgywcgB004
Cucsa.031900	Watermelon (97103) v1	cgywmB003
Cucsa.031900	Cucurbita pepo (Zucchini)	cgycpeB0009
Cucsa.031900	Bottle gourd (USVL1VR-Ls)	cgylsiB004