Cucsa.031190 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.031190
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	scaffold00429 : 21894 .. 23090 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAGCGAGTCATTGCAGACAAATGCTCAACAGAAGAAAAATGATGAAATGAAGCTGAAGGACTTGAAAGTGAAAATTTATCTTTTCCAAGCCATTGATCGCACAATTCTGAAGACCATTCTCAAGAAAAATACTGCAAAAGAAATATGGGATGCTATGAAGAAAAAGTATGAAGGAAATGCAAGAGTCAGGCGGTCTTATCTTCAAGCTCTTTGTAGAGAATTTGAAATTCTTGAGATGAAGTCTGGTGAAGGGGTGACAGAGTACTTCTCCAGAGTCATGATTGTGGCAAATAAGATGCGAACTTATGGTGAAGATATGCAAGATGTAAAAGTAGTTGAAAAAATCCTACGCTCCTTGACTGACAACTTTAATTATATTGTTTCTTCTATTGAAGAGTCAAAAGATCCCAACACTCTCACTATTGATGAATTACAAAGTTCTTTAATAGTACATGAACAAAAGTTTCAACGACGAGGTGGGGAGGAGCAAGCCTTGAAAGTGACAAATGATGAAGGAAGAGGTCGTGGTAGTGGCAGCTATAGAGGAAGAGGTCGGGGAACTTTCAACAAAGCCAATGTGCAGTGTTTTCGATGCCAAAAATTTGGATATTTTCAATATGAATGTTCTGAAAACAAAGAAGCAAACTATGCTGAATTTGATGAGGAAGAAGAAATGTTTTTGATGTCTTATGAGGAAAAACATGGAGTTCAAAGAGAAGATACATGGATTCTTGATTTTGGGTGTTCAAATCATATGTGTGGTGATCGATCAATGTTTAGTGATCTCAATGAAGATTTTCGACATTCAGTGAAATTGGGAAACAACACTAGAATGAATGTCATGGGCAAAGGAAATGTAAAGTTGCTCATAAATGGAGTTAATCACGTTGTTGCTGAGGTATATTACATTCCAGATTTAAGTAGCAACCTATTGAGCATAGGACAATTGCAAGAAAAAGGAATGTCGATTTTGATCAAGCGAGGAGAGTGCAAAATATTTCATCCAAAGATGGATTTGATTATTCAGATCAAGATGAGCAACAGTAGGATGTTTACTTTGCAAGCTCAAACTCAAATATCTTGGGGAATTGACAAAAATAGGCCAAAAATGGGGCAGATAAAGACTTTTAGGATTGATTGTAAAAAGGTTGACATTTAG

mRNA sequence

CATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAGCGAGTCATTGCAGACAAATGCTCAACAGAAGAAAAATGATGAAATGAAGCTGAAGGACTTGAAAGTGAAAATTTATCTTTTCcaagccattgatcgcacaattctgaagaccattctcaagaaaaatactgcaaaagaaatatgggatgctatgaagaaaaagtatgaaggaaatgcaagagtcaggcggtcttatcttcaagctctttgtagagaatttgaaattcttgagatgaagtctggtgaaggggtgacagagtacttctccagagtcatgattgtggcaaataagatgcgaacttatggtgaagatatgcaagatgtaaaagtagttgaaaaaatcctacgctccttgactgacaactttaattatattgtttcttctattgaagagtcaaaagatcccaacactctcactattgatgaattacaaagttctttaatagtacatgaacaaaagtttcAACGACGAGGTGGGGAGGAGCAAGCCTTGAAAGTGACAAATGATGAAGGAAGAGGTCGTGGTAGTGGCAGCTATAGAGGAAGAGGTCGGGGAACTTTCAACAAAGCCAATGTGCATGATCTCAATGAAGATTTTCGACATTCAGTGAAATTGGGAAACAACACTAGAATGAATGTCATGGGCAAAGGAAATGTAAAGTTGCTCATAAATGGAGTTAATCACGTTGTTGCTGAGGTATATTACATTCCAGATTTAAGTAGCAACCTATTGAGCATAGGACAATTGCAAGAAAAAGGAATGTCGATTTTGATCAAGCGAGGAGAGTGCAAAATATTTCATCCAAAGATGGATTTGATTATTCAGATCAAGATGAGCAACAGTAGGATGTTTACTTTGCAAGCTCAAACTCAAATATCTTggggaattgacaaaaataggccaaaaatggggcagataaagacttttaggattgattgtaaaaaggttgacatttag

Coding sequence (CDS)

CATTGGGAGTTGGTAGAACCTGGATATGTTGAACCAGCTAGCGAGTCATTGCAGACAAATGCTCAACAGAAGAAAAATGATGAAATGAAGCTGAAGGACTTGAAAGTGAAAATTTATCTTTTCCAAGCCATTGATCGCACAATTCTGAAGACCATTCTCAAGAAAAATACTGCAAAAGAAATATGGGATGCTATGAAGAAAAAGTATGAAGGAAATGCAAGAGTCAGGCGGTCTTATCTTCAAGCTCTTTGTAGAGAATTTGAAATTCTTGAGATGAAGTCTGGTGAAGGGGTGACAGAGTACTTCTCCAGAGTCATGATTGTGGCAAATAAGATGCGAACTTATGGTGAAGATATGCAAGATGTAAAAGTAGTTGAAAAAATCCTACGCTCCTTGACTGACAACTTTAATTATATTGTTTCTTCTATTGAAGAGTCAAAAGATCCCAACACTCTCACTATTGATGAATTACAAAGTTCTTTAATAGTACATGAACAAAAGTTTCAACGACGAGGTGGGGAGGAGCAAGCCTTGAAAGTGACAAATGATGAAGGAAGAGGTCGTGGTAGTGGCAGCTATAGAGGAAGAGGTCGGGGAACTTTCAACAAAGCCAATGTGCATGATCTCAATGAAGATTTTCGACATTCAGTGAAATTGGGAAACAACACTAGAATGAATGTCATGGGCAAAGGAAATGTAAAGTTGCTCATAAATGGAGTTAATCACGTTGTTGCTGAGGTATATTACATTCCAGATTTAAGTAGCAACCTATTGAGCATAGGACAATTGCAAGAAAAAGGAATGTCGATTTTGATCAAGCGAGGAGAGTGCAAAATATTTCATCCAAAGATGGATTTGATTATTCAGATCAAGATGAGCAACAGTAGGATGTTTACTTTGCAAGCTCAAACTCAAATATCTTGGGGAATTGACAAAAATAGGCCAAAAATGGGGCAGATAAAGACTTTTAGGATTGATTGTAAAAAGGTTGACATTTAG

Protein sequence

HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKEIWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQDVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKVTNDEGRGRGSGSYRGRGRGTFNKANVHDLNEDFRHSVKLGNNTRMNVMGKGNVKLLINGVNHVVAEVYYIPDLSSNLLSIGQLQEKGMSILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQTQISWGIDKNRPKMGQIKTFRIDCKKVDI*

Homology

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BLAST of Cucsa.031190 vs. TrEMBL
Match: A5C8B4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004671 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.1e-81
Identity = 185/337 (54.90%), Postives = 221/337 (65.58%), Query Frame = 1


Query: 1   HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKE 60
           +W LVE GY EP + +  T AQQK+ DEMKLKDLKVK YLFQAIDRTIL+TIL+KNT+K+
Sbjct: 37  YWSLVETGYDEPQANAAMTEAQQKRLDEMKLKDLKVKNYLFQAIDRTILETILQKNTSKQ 96

Query: 61  IWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQ 120
           IWD+MKKKYEGNARV+RS LQAL R+FE +EMKS E +T+YFSRVM V+NKMR +GE M 
Sbjct: 97  IWDSMKKKYEGNARVKRSILQALRRDFETVEMKSSECITDYFSRVMSVSNKMRFHGEQML 156

Query: 121 DVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKV 180
           +V +VEKILR LTDNFNYIV SIEESKD +TLTIDELQSSLIVHEQKF ++  EEQALKV
Sbjct: 157 EVTIVEKILRXLTDNFNYIVCSIEESKDTDTLTIDELQSSLIVHEQKFHQKPVEEQALKV 216

Query: 181 TNDE---GRGRGSGSYRGRGRG---------------------------TFNK-ANVHDL 240
           T DE     GRG  SYRGRGRG                           T+NK AN  +L
Sbjct: 217 TTDERIGAGGRGRNSYRGRGRGRGRQAFNRAIVECYRCHQLGHFQYDCPTWNKEANYAEL 276

Query: 241 NEDFRHSVKLGNNTRMNVMGKGNVKLLINGV-NHVVAEVYYIPDLSSNLLSIGQLQEKGM 300
            E     V L      +   + +V  L +G  NH+  +     +L+ +         KG+
Sbjct: 277 EE--HEDVLLMAYVEEHEAMRNDVWFLDSGCSNHMCGDARMFSELNESFRQ-QTTTGKGL 336

Query: 301 SILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQTQ 306
           +I I  G CKI+HP   LIIQ  MS +RMFTL A  Q
Sbjct: 337 AITIHDGLCKIYHPNKVLIIQTAMSTNRMFTLLANKQ 370

[Close]

BLAST of Cucsa.031190 vs. TrEMBL
Match: A5B3I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004365 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 6.5e-77
Identity = 169/362 (46.69%), Postives = 226/362 (62.43%), Query Frame = 1


Query: 1   HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKE 60
           +W LVE G    A   + T+AQ+K  D+ KLKDLK K YLFQA+DR++L+TIL K+TAK 
Sbjct: 34  YWGLVESGIPTVAEGVVLTDAQRKNIDDQKLKDLKAKNYLFQALDRSVLETILNKDTAKN 93

Query: 61  IWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQ 120
           IWD++K+KY+G  RV+R++LQAL +EFE+L MK+GE V EYF+R + +ANKM+  GE+  
Sbjct: 94  IWDSLKQKYQGTTRVKRAHLQALRKEFELLHMKAGESVNEYFARTLTIANKMKANGENKG 153

Query: 121 DVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKV 180
           DV VVEKILRS+T  F+Y+V SIEESKD NTLTIDELQSSL+VHEQ+      EE ALK+
Sbjct: 154 DVVVVEKILRSMTPKFDYVVCSIEESKDTNTLTIDELQSSLLVHEQRMSSHVEEEHALKI 213

Query: 181 TNDE---GRGRGSGSYRGRGRGT----FNKANVHDLN--------------------EDF 240
           T+ +   GRGRG GS+ GRGRG     FNKA V   N                     D 
Sbjct: 214 THGDQYGGRGRGRGSFGGRGRGRGRQYFNKATVECYNCHKLGNFKWECPSKENEANYADT 273

Query: 241 RHSVKLGNNTRMNVMGKGNVKLLINGV-NHVVAE-------------------------- 300
           +  + L     MN   + ++  L +G  NH+                             
Sbjct: 274 QEEMLLMAYVDMNKAHREDMWFLDSGCSNHMCGTKEYFLDFDGSFRDSVKLGNNTSMVVT 333

Query: 301 ---VYYIPDLSSNLLSIGQLQEKGMSILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQ 306
              V+Y+P+L +NLLSIGQLQEKG++IL + G+CK+FHP+  +I ++KMS++RMF L A 
Sbjct: 334 GKGVFYVPELKNNLLSIGQLQEKGLTILFQSGKCKVFHPERGVITEMKMSSNRMFMLHAI 393

[Close]

BLAST of Cucsa.031190 vs. TrEMBL
Match: M5W8K4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025086mg PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 7.4e-73
Identity = 149/216 (68.98%), Postives = 176/216 (81.48%), Query Frame = 1


Query: 1   HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKE 60
           +W LVE GY E  + +  T AQQKK DE+KLKDLKVK YLFQAIDR IL+TIL+K+++K+
Sbjct: 35  YWNLVETGYAETEAGAAVTEAQQKKLDELKLKDLKVKNYLFQAIDRDILETILQKDSSKQ 94

Query: 61  IWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQ 120
           IWD+M+KKYEGNARV+RS LQAL +EFE LEMK+GE V +YFSRVM +ANKMR +GE M 
Sbjct: 95  IWDSMRKKYEGNARVKRSILQALRKEFETLEMKTGEKVCDYFSRVMSLANKMRVHGERMV 154

Query: 121 DVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKV 180
           DV +VEKILRSLTD FNYIV SIEESKD + L+IDELQSSLIVHEQKF +  GEEQALKV
Sbjct: 155 DVTIVEKILRSLTDKFNYIVCSIEESKDIDQLSIDELQSSLIVHEQKFHKHDGEEQALKV 214

Query: 181 TNDE---GRGRGSGSYRGRGRG---TFNKANVHDLN 211
           T+++   GRGRG GSYRGRGRG   TF+K+ V   N
Sbjct: 215 THEDRSGGRGRGRGSYRGRGRGRGQTFDKSLVECYN 250

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BLAST of Cucsa.031190 vs. TrEMBL
Match: A5B1F3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040588 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 2.2e-72
Identity = 155/262 (59.16%), Postives = 186/262 (70.99%), Query Frame = 1


Query: 65  MKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQDVKV 124
           MKKKYEGNARV+RS LQAL R+FE LEMKSGE +T+YFSRVM V+NKMR +GE M++V +
Sbjct: 1   MKKKYEGNARVKRSILQALRRDFETLEMKSGECITDYFSRVMSVSNKMRFHGEQMREVTI 60

Query: 125 VEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKVTNDE 184
           VEKILRSLTDNFNYIV SIEESKD +TLTIDELQSSLIVHEQKF ++  EEQALKVT DE
Sbjct: 61  VEKILRSLTDNFNYIVCSIEESKDTDTLTIDELQSSLIVHEQKFHKKPVEEQALKVTTDE 120

Query: 185 GRGRGSGSYRGRGRGTFNKANVHD---------------------LNEDFRHSVKLGNNT 244
             G G     G GR   ++A  +D                     L+E FR  VKL NN+
Sbjct: 121 RIGXG-----GXGRNXEHEAMRNDVWFLDXGCSNHMCGDARMFSELDESFRQQVKLENNS 180

Query: 245 RMNVMGKGNVKLLINGVNHVVAEVYYIPDLSSNLLSIGQLQEKGMSILIKRGECKIFHPK 304
            + V  +GNV+L +NG   V+  V+Y+P+L +NLLSIGQLQEKG++I+I  G CKI+HP 
Sbjct: 181 XITVKXRGNVRLQLNGFKFVLTVVFYVPELKNNLLSIGQLQEKGLAIMIHDGLCKIYHPD 240

Query: 305 MDLIIQIKMSNSRMFTLQAQTQ 306
             LIIQ  MS +RMFTL A  Q
Sbjct: 241 KGLIIQTAMSTNRMFTLLANKQ 257

[Close]

BLAST of Cucsa.031190 vs. TrEMBL
Match: A5BQM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036712 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 6.3e-72
Identity = 146/213 (68.54%), Postives = 171/213 (80.28%), Query Frame = 1


Query: 1   HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKE 60
           +W LVE GY EP + +  T AQQK+ DEMKLKDLKVK Y+FQAIDRTIL+TIL+KNT+K+
Sbjct: 37  YWSLVETGYDEPQANAAMTKAQQKRLDEMKLKDLKVKNYMFQAIDRTILETILQKNTSKQ 96

Query: 61  IWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQ 120
           IWD+MKKKYE NARV+RS LQ L R+FE LEMKSGE +T+YFSRVM V+NKMR +GE ++
Sbjct: 97  IWDSMKKKYEENARVKRSILQTLRRDFETLEMKSGECITDYFSRVMSVSNKMRFHGEQIR 156

Query: 121 DVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKV 180
           +V +VEKILRSLTDNFNYIV SIEESKD +TLTI+ELQ SLIVHEQKF ++  EEQALKV
Sbjct: 157 EVTIVEKILRSLTDNFNYIVCSIEESKDTDTLTINELQISLIVHEQKFHKKPVEEQALKV 216

Query: 181 TNDE---GRGRGSGSYRGRGRG----TFNKANV 207
           T DE     G G   YRGRGRG     FN+A V
Sbjct: 217 TTDERIGAGGHGRNGYRGRGRGRGRQAFNRATV 249

[Close]

BLAST of Cucsa.031190 vs. NCBI nr
Match: gi|778688589|ref|XP_011652786.1| (PREDICTED: uncharacterized protein LOC105435094 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 2.4e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 29  MKLKDLKVKIYLFQAIDRTILKTILKKNTAKEIWDAMKKKYEGNARVRRSYLQALCREFE 88
           MKLKDLKVKIYLFQAIDRTILKTILKKNTAKEIWDAMKKKYEGNARVRRSYLQALCREFE
Sbjct: 1   MKLKDLKVKIYLFQAIDRTILKTILKKNTAKEIWDAMKKKYEGNARVRRSYLQALCREFE 60

Query: 89  ILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQDVKVVEKILRSLTDNFNYIVSSIEESKD 148
           ILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQDVKVVEKILRSLTDNFNYIVSSIEESKD
Sbjct: 61  ILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQDVKVVEKILRSLTDNFNYIVSSIEESKD 120

Query: 149 PNTLTIDELQSSLIVHEQKFQRRGGEEQALKVTNDEGRGRGSGSYRGRGRGTFNKANV 207
           PNTLTIDELQSSLIVHEQKFQRRGGEEQALKVTNDEGRGRGSGSYRGRGRGTFNKANV
Sbjct: 121 PNTLTIDELQSSLIVHEQKFQRRGGEEQALKVTNDEGRGRGSGSYRGRGRGTFNKANV 178

[Close]

BLAST of Cucsa.031190 vs. NCBI nr
Match: gi|778688589|ref|XP_011652786.1| (PREDICTED: uncharacterized protein LOC105435094 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 5.0e-54
Identity = 120/187 (64.17%), Postives = 137/187 (73.26%), Query Frame = 1


Query: 136 FNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKVTNDEGRGRGSGSYRG 195
           F Y      E+K+ N    DE +   ++  +  ++ G + +   + +      G  ++  
Sbjct: 186 FGYFQYECSENKEANYAEFDEEEEMFLMSYE--EKHGVQREDTWILDF-----GCSNHMC 245

Query: 196 RGRGTFNKANVHDLNEDFRHSVKLGNNTRMNVMGKGNVKLLINGVNHVVAEVYYIPDLSS 255
             R  F+     DLNEDFRHSVKLGNNTRMNVMGKGNVKLLINGVNHVVAEVYYIPDLSS
Sbjct: 246 GDRSMFS-----DLNEDFRHSVKLGNNTRMNVMGKGNVKLLINGVNHVVAEVYYIPDLSS 305

Query: 256 NLLSIGQLQEKGMSILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQTQISWGIDKNRP 315
           NLLSIGQLQEKGMSILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQTQISWGIDKNR 
Sbjct: 306 NLLSIGQLQEKGMSILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQTQISWGIDKNRE 360

Query: 316 KMGQIKT 323
           +M  + T
Sbjct: 366 EMHVVCT 360

HSP 2 Score: 311.6 bits (797), Expect = 1.6e-81
Identity = 185/337 (54.90%), Postives = 221/337 (65.58%), Query Frame = 1


Query: 1   HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKE 60
           +W LVE GY EP + +  T AQQK+ DEMKLKDLKVK YLFQAIDRTIL+TIL+KNT+K+
Sbjct: 37  YWSLVETGYDEPQANAAMTEAQQKRLDEMKLKDLKVKNYLFQAIDRTILETILQKNTSKQ 96

Query: 61  IWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQ 120
           IWD+MKKKYEGNARV+RS LQAL R+FE +EMKS E +T+YFSRVM V+NKMR +GE M 
Sbjct: 97  IWDSMKKKYEGNARVKRSILQALRRDFETVEMKSSECITDYFSRVMSVSNKMRFHGEQML 156

Query: 121 DVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKV 180
           +V +VEKILR LTDNFNYIV SIEESKD +TLTIDELQSSLIVHEQKF ++  EEQALKV
Sbjct: 157 EVTIVEKILRXLTDNFNYIVCSIEESKDTDTLTIDELQSSLIVHEQKFHQKPVEEQALKV 216

Query: 181 TNDE---GRGRGSGSYRGRGRG---------------------------TFNK-ANVHDL 240
           T DE     GRG  SYRGRGRG                           T+NK AN  +L
Sbjct: 217 TTDERIGAGGRGRNSYRGRGRGRGRQAFNRAIVECYRCHQLGHFQYDCPTWNKEANYAEL 276

Query: 241 NEDFRHSVKLGNNTRMNVMGKGNVKLLINGV-NHVVAEVYYIPDLSSNLLSIGQLQEKGM 300
            E     V L      +   + +V  L +G  NH+  +     +L+ +         KG+
Sbjct: 277 EE--HEDVLLMAYVEEHEAMRNDVWFLDSGCSNHMCGDARMFSELNESFRQ-QTTTGKGL 336

Query: 301 SILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQTQ 306
           +I I  G CKI+HP   LIIQ  MS +RMFTL A  Q
Sbjct: 337 AITIHDGLCKIYHPNKVLIIQTAMSTNRMFTLLANKQ 370

[Close]

BLAST of Cucsa.031190 vs. NCBI nr
Match: gi|147820839|emb|CAN65188.1| (hypothetical protein VITISV_004365 [Vitis vinifera])

HSP 1 Score: 295.8 bits (756), Expect = 9.3e-77
Identity = 169/362 (46.69%), Postives = 226/362 (62.43%), Query Frame = 1


Query: 1   HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKE 60
           +W LVE G    A   + T+AQ+K  D+ KLKDLK K YLFQA+DR++L+TIL K+TAK 
Sbjct: 34  YWGLVESGIPTVAEGVVLTDAQRKNIDDQKLKDLKAKNYLFQALDRSVLETILNKDTAKN 93

Query: 61  IWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQ 120
           IWD++K+KY+G  RV+R++LQAL +EFE+L MK+GE V EYF+R + +ANKM+  GE+  
Sbjct: 94  IWDSLKQKYQGTTRVKRAHLQALRKEFELLHMKAGESVNEYFARTLTIANKMKANGENKG 153

Query: 121 DVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKV 180
           DV VVEKILRS+T  F+Y+V SIEESKD NTLTIDELQSSL+VHEQ+      EE ALK+
Sbjct: 154 DVVVVEKILRSMTPKFDYVVCSIEESKDTNTLTIDELQSSLLVHEQRMSSHVEEEHALKI 213

Query: 181 TNDE---GRGRGSGSYRGRGRGT----FNKANVHDLN--------------------EDF 240
           T+ +   GRGRG GS+ GRGRG     FNKA V   N                     D 
Sbjct: 214 THGDQYGGRGRGRGSFGGRGRGRGRQYFNKATVECYNCHKLGNFKWECPSKENEANYADT 273

Query: 241 RHSVKLGNNTRMNVMGKGNVKLLINGV-NHVVAE-------------------------- 300
           +  + L     MN   + ++  L +G  NH+                             
Sbjct: 274 QEEMLLMAYVDMNKAHREDMWFLDSGCSNHMCGTKEYFLDFDGSFRDSVKLGNNTSMVVT 333

Query: 301 ---VYYIPDLSSNLLSIGQLQEKGMSILIKRGECKIFHPKMDLIIQIKMSNSRMFTLQAQ 306
              V+Y+P+L +NLLSIGQLQEKG++IL + G+CK+FHP+  +I ++KMS++RMF L A 
Sbjct: 334 GKGVFYVPELKNNLLSIGQLQEKGLTILFQSGKCKVFHPERGVITEMKMSSNRMFMLHAI 393

[Close]

BLAST of Cucsa.031190 vs. NCBI nr
Match: gi|985457677|ref|XP_015387654.1| (PREDICTED: uncharacterized protein LOC107177766 [Citrus sinensis])

HSP 1 Score: 290.4 bits (742), Expect = 3.9e-75
Identity = 148/180 (82.22%), Postives = 164/180 (91.11%), Query Frame = 1


Query: 2   WELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKEI 61
           WELVE GYVE AS S+QT+AQ+KKNDEMKLKDLKVK YLFQAIDRT+L TILKK+TAKEI
Sbjct: 13  WELVELGYVESASGSVQTDAQRKKNDEMKLKDLKVKNYLFQAIDRTVLDTILKKDTAKEI 72

Query: 62  WDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQD 121
           WDA+KKK+EGNAR++RS+LQAL REFE LEM+SGEGVT+YFS+VM VANKMR YGEDMQD
Sbjct: 73  WDAIKKKFEGNARLKRSHLQALRREFETLEMRSGEGVTKYFSKVMTVANKMRIYGEDMQD 132

Query: 122 VKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKVT 181
           VKVVEKILRSLT+ FNY+V SIEESKD + LTIDELQSSLIVHEQKFQRR  EEQ LKVT
Sbjct: 133 VKVVEKILRSLTEKFNYVVCSIEESKDIDALTIDELQSSLIVHEQKFQRRNSEEQVLKVT 192

[Close]

BLAST of Cucsa.031190 vs. NCBI nr
Match: gi|595844877|ref|XP_007208825.1| (hypothetical protein PRUPE_ppa025086mg [Prunus persica])

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 149/216 (68.98%), Postives = 176/216 (81.48%), Query Frame = 1


Query: 1   HWELVEPGYVEPASESLQTNAQQKKNDEMKLKDLKVKIYLFQAIDRTILKTILKKNTAKE 60
           +W LVE GY E  + +  T AQQKK DE+KLKDLKVK YLFQAIDR IL+TIL+K+++K+
Sbjct: 35  YWNLVETGYAETEAGAAVTEAQQKKLDELKLKDLKVKNYLFQAIDRDILETILQKDSSKQ 94

Query: 61  IWDAMKKKYEGNARVRRSYLQALCREFEILEMKSGEGVTEYFSRVMIVANKMRTYGEDMQ 120
           IWD+M+KKYEGNARV+RS LQAL +EFE LEMK+GE V +YFSRVM +ANKMR +GE M 
Sbjct: 95  IWDSMRKKYEGNARVKRSILQALRKEFETLEMKTGEKVCDYFSRVMSLANKMRVHGERMV 154

Query: 121 DVKVVEKILRSLTDNFNYIVSSIEESKDPNTLTIDELQSSLIVHEQKFQRRGGEEQALKV 180
           DV +VEKILRSLTD FNYIV SIEESKD + L+IDELQSSLIVHEQKF +  GEEQALKV
Sbjct: 155 DVTIVEKILRSLTDKFNYIVCSIEESKDIDQLSIDELQSSLIVHEQKFHKHDGEEQALKV 214

Query: 181 TNDE---GRGRGSGSYRGRGRG---TFNKANVHDLN 211
           T+++   GRGRG GSYRGRGRG   TF+K+ V   N
Sbjct: 215 THEDRSGGRGRGRGSYRGRGRGRGQTFDKSLVECYN 250

The following BLAST results are available for this feature:

BLAST of Cucsa.031190 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C8B4_VITVI	1.1e-81	54.90	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004671 PE=4 SV=1	[more]
A5B3I2_VITVI	6.5e-77	46.69	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004365 PE=4 SV=1	[more]
M5W8K4_PRUPE	7.4e-73	68.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025086mg PE=4 SV=1	[more]
A5B1F3_VITVI	2.2e-72	59.16	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040588 PE=4 SV=1	[more]
A5BQM4_VITVI	6.3e-72	68.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036712 PE=4 SV=1	[more]

BLAST of Cucsa.031190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688589\|ref\|XP_011652786.1\|	2.4e-93	100.00	PREDICTED: uncharacterized protein LOC105435094 [Cucumis sativus]	[more]
gi\|778688589\|ref\|XP_011652786.1\|	5.0e-54	64.17	PREDICTED: uncharacterized protein LOC105435094 [Cucumis sativus]	[more]
gi\|147820839\|emb\|CAN65188.1\|	9.3e-77	46.69	hypothetical protein VITISV_004365 [Vitis vinifera]	[more]
gi\|985457677\|ref\|XP_015387654.1\|	3.9e-75	82.22	PREDICTED: uncharacterized protein LOC107177766 [Citrus sinensis]	[more]
gi\|595844877\|ref\|XP_007208825.1\|	1.1e-72	68.98	hypothetical protein PRUPE_ppa025086mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.031190.1	Cucsa.031190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..307 score: 6.0
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 2..307 score: 6.0
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 32..169 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.031190	CSPI03G20990	Wild cucumber (PI 183967)	cgycpiB003
Cucsa.031190	MELO3C032096.2	Melon (DHL92) v3.6.1	cgymedB004
Cucsa.031190	CsaV3_3G020870	Cucumber (Chinese Long) v3	cgycucB006

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None