Cucsa.018390 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.018390
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Locationscaffold00252 : 799572 .. 800990 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTTGCAGGATTTTTCTGGCTTTCATTATTTAATTGCCCATCACCATCCACAGATGTTTCCCATCTCTCCTAAAAATAAGGTCACTATTAACCAAAAACAAACCAATTTTATTCCTGACACTAAGTATTCTACGGCTATCATCCGACACCCATTTGATTTCACACAGATAGCTTTCTCACCATCCCTTTACATTGTGAACAAGGGTCAACCTCTCACTCGGCAGACCATTGGAACGATTTTTACTTTACTCCAATTCGTACAAGACATCAACCATCAAACCCTATGTAAGGCCCCCTATTATCCATACATACAAAAGGAGGGGTAAAAGCGTAAAAGCTCACGCAGCAGAAAATGGGAGAATGTTAGGAAAAGAACATGAGAGTGGGGCCCACGGGGAGGAATGAGAGAAGAGCTATAAATAGGGCCTTATCGGGATTGGGAGTTAGGTTAACTTTTGTCTTCATTTGGTCTGTAGAGGCTGCTACGTCTAGGGAAGGAATACTATCTTTTCCTAGGGAGGTTTGGCATGTTATTATCATCTTTGTTGCTTTATTTTTATATTTTCTTCTGCTGTATCTTTTGGCATTTATACATAAATAAAACCGGCACAATGAAGGTACATTGGCCATCATTAACCATGACCTTTTGGACAAAAGACAAGCAAATTGTGTTAAGAGGAGATCCATCCTTAGTTAAAGCTGAATGTTCCTTGAAGACCTTGGAGAAAACGTGGGATATAGAAGATCATGGCTTTCTCTTGGAATTCCAGAATTATGAGATGGAGTAGAGGATGAATATGAAAAGGGAACAAGCTTAAAAGGAGATGAGGAGGAATTACCTATGATCCGATCCTTGCTCAAGTATTATGCGGAGATATTTGAGACACCAAAGAAACTACCTCCAAAAAGAGCTATTGATCGCCGAATATTAACCTTACCGGATCATAAACCTATCAATGTAAGACCTTACAAATACGGACATGTGCAGAAGGAAGAAATCGAAAAGCTTGTGGTCGAGATGCTTCGGGCAAGGAATATTCGCCCTAGTCATAGCCCTTACTCCAGCCCGGTGTTGTTAGTGAAGAAAAAAGATGGTGGATGGCGGTTTTGTGTCGATTACCGCAAGTTAACTCAGTTGACAGTGTCGGATAAGTTCCCAATTCCTGTGATAGAGGAATTATTAGATGAGTTGAATTGGGCAACGGTTTTCTCAAAACTAGATCTGAAATCTGGTTATCACCAAATAAGAATGAAAGAGGAAGATGTGGAGAAAACAGCATTCCGCACACATGAAGGGCACTACGAGTTTCTTGTGATGCCGTTTGGTCTCACGAATGCCCCGACAACCTTTCAATCTCTGATGAACCAGGTATTTAAGCCCTTCCTTCGGCACTGTGTTTTGGTGTTCTTTGATGAT

mRNA sequence

CAATTTGCAGGATTTTTCTGGCTTTCATTATTTAATTGCCCATCACCATCCACAGATGTTTCCCATCTCTCCTAAAAATAAGGTCACTATTAACCAAAAACAAACCAATTTTATTCCTGACACTAAGTATTCTACGGCTATCATCCGACACCCATTTGATTTCACACAGATAGCTTTCTCACCATCCCTTTACATTGTGAACAAGGGTCAACCTCTCACTCGGCAGACCATTGGAACGATTTTTACTTTACTCCAATTCggaacaagcttaaaaggagatgaggaggaattacctatgatccgatccttgctcaagtattatgcggagatatttgagacaccaaagaaactacctccaaaaagagctattgatcgccgaatattaaccttaccggatcataaacctatcaatgtaagaccttacaaatacggacatgtgcagaaggaagaaatcgaaaagcttgtggtcgagatgcttcgggcaaggaatattcgccctagtcatagcccttactccagcccggtgttgttagtgaagaaaaaagatggtggatggcggttttgtgtcgattaccgcaagttaactcagttgacagtgtcggataagttcccaattcctgtgatagaggaattattagatgagttgaattgggcaacggttttctcaaaactagatctgaaatctggttatcaccaaataagaatgaaagaggaagatgtggagaaaacagcattccgcacacatgaagggcactacgagtttcttgtgatgccgtttggtctcacgaatgccccgacaacctttcaatctctgatgaaccaggtatttaagcccttccttcggcactgtgttttggtgttctttgatgat

Coding sequence (CDS)

CAATTTGCAGGATTTTTCTGGCTTTCATTATTTAATTGCCCATCACCATCCACAGATGTTTCCCATCTCTCCTAAAAATAAGGTCACTATTAACCAAAAACAAACCAATTTTATTCCTGACACTAAGTATTCTACGGCTATCATCCGACACCCATTTGATTTCACACAGATAGCTTTCTCACCATCCCTTTACATTGTGAACAAGGGTCAACCTCTCACTCGGCAGACCATTGGAACGATTTTTACTTTACTCCAATTCGGAACAAGCTTAAAAGGAGATGAGGAGGAATTACCTATGATCCGATCCTTGCTCAAGTATTATGCGGAGATATTTGAGACACCAAAGAAACTACCTCCAAAAAGAGCTATTGATCGCCGAATATTAACCTTACCGGATCATAAACCTATCAATGTAAGACCTTACAAATACGGACATGTGCAGAAGGAAGAAATCGAAAAGCTTGTGGTCGAGATGCTTCGGGCAAGGAATATTCGCCCTAGTCATAGCCCTTACTCCAGCCCGGTGTTGTTAGTGAAGAAAAAAGATGGTGGATGGCGGTTTTGTGTCGATTACCGCAAGTTAACTCAGTTGACAGTGTCGGATAAGTTCCCAATTCCTGTGATAGAGGAATTATTAGATGAGTTGAATTGGGCAACGGTTTTCTCAAAACTAGATCTGAAATCTGGTTATCACCAAATAAGAATGAAAGAGGAAGATGTGGAGAAAACAGCATTCCGCACACATGAAGGGCACTACGAGTTTCTTGTGATGCCGTTTGGTCTCACGAATGCCCCGACAACCTTTCAATCTCTGATGAACCAGGTATTTAAGCCCTTCCTTCGGCACTGTGTTTTGGTGTTCTTTGATGAT

Protein sequence

NLQDFSGFHYLIAHHHPQMFPISPKNKVTINQKQTNFIPDTKYSTAIIRHPFDFTQIAFSPSLYIVNKGQPLTRQTIGTIFTLLQFGTSLKGDEEELPMIRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIEKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELLDELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLMNQVFKPFLRHCVLVFFDD
Homology
[Close]
BLAST of Cucsa.018390 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.1e-36
Identity = 81/204 (39.71%), Postives = 118/204 (57.84%), Query Frame = 1 

Query: 93  DEEELPMIRSLLKYYAEI-FETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEI 152
           ++EE   ++ LL  +  + ++  +KL     I + +L    + PI  + Y      + E+
Sbjct: 164 NQEETFKLKGLLNKFRNLEYKEGEKLTFTNTI-KHVLNTTHNSPIYSKQYPLAQTHEIEV 223

Query: 153 EKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGG-----WRFCVDYRKLTQLTVSDKFPIP 212
           E  V EML    IR S+SPY+SP  +V KK        +R  +DYRKL ++T+ D++PIP
Sbjct: 224 ENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIP 283

Query: 213 VIEELLDELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPT 272
            ++E+L +L     F+ +DL  G+HQI M EE + KTAF T  GHYE+L MPFGL NAP 
Sbjct: 284 NMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPA 343

Query: 273 TFQSLMNQVFKPFLRHCVLVFFDD 291
           TFQ  MN + +P L    LV+ DD
Sbjct: 344 TFQRCMNNILRPLLNKHCLVYLDD 366

[Close]
BLAST of Cucsa.018390 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 3.8e-34
Identity = 86/194 (44.33%), Postives = 113/194 (58.25%), Query Frame = 1 

Query: 103 LLKYYAEIFETPKKLPPKRA------IDRRILTLPDHKPINVRPYKYGHVQKEEIEKLVV 162
           L + Y EI      LPP+ A      +   I   P  +   ++PY      ++EI K+V 
Sbjct: 586 LQQKYREIIRND--LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 645

Query: 163 EMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELLDELN 222
           ++L  + I PS SP SSPV+LV KKDG +R CVDYR L + T+SD FP+P I+ LL  + 
Sbjct: 646 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 705

Query: 223 WATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLMNQVF 282
            A +F+ LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   F
Sbjct: 706 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 765

Query: 283 KPFLRHCVLVFFDD 291
           +      V V+ DD
Sbjct: 766 RDL--RFVNVYLDD 775

[Close]
BLAST of Cucsa.018390 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 146.7 bits (369), Expect = 3.8e-34
Identity = 86/194 (44.33%), Postives = 113/194 (58.25%), Query Frame = 1 

Query: 103 LLKYYAEIFETPKKLPPKRA------IDRRILTLPDHKPINVRPYKYGHVQKEEIEKLVV 162
           L + Y EI      LPP+ A      +   I   P  +   ++PY      ++EI K+V 
Sbjct: 560 LQQKYREIIRND--LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQ 619

Query: 163 EMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELLDELN 222
           ++L  + I PS SP SSPV+LV KKDG +R CVDYR L + T+SD FP+P I+ LL  + 
Sbjct: 620 KLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIG 679

Query: 223 WATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLMNQVF 282
            A +F+ LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   M   F
Sbjct: 680 NAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 739

Query: 283 KPFLRHCVLVFFDD 291
           +      V V+ DD
Sbjct: 740 RDL--RFVNVYLDD 749

[Close]
BLAST of Cucsa.018390 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-34
Identity = 71/155 (45.81%), Postives = 96/155 (61.94%), Query Frame = 1 

Query: 141 YKYGHVQKEEIEKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGG-----WRFCVDYRKLT 200
           Y Y    ++E+E  + +ML    IR S+SPY+SP+ +V KK        +R  +DYRKL 
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 201 QLTVSDKFPIPVIEELLDELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFL 260
           ++TV D+ PIP ++E+L +L     F+ +DL  G+HQI M  E V KTAF T  GHYE+L
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 261 VMPFGLTNAPTTFQSLMNQVFKPFLRHCVLVFFDD 291
            MPFGL NAP TFQ  MN + +P L    LV+ DD
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDD 367

[Close]
BLAST of Cucsa.018390 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.0e-32
Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 1 

Query: 99  MIRSLLKYYAEIFETPKK-LPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIEKLVVE 158
           ++ SLL  +  IFE P   +  + A+   I T     PI  + Y Y    + E+E+ + E
Sbjct: 87  ILNSLLGEFPRIFEPPLSGMSVETAVKAEIRT-NTQDPIYAKSYPYPVNMRGEVERQIDE 146

Query: 159 MLRARNIRPSHSPYSSPVLLVKKK-----DGGWRFCVDYRKLTQLTVSDKFPIPVIEELL 218
           +L+   IRPS+SPY+SP+ +V KK     +  +R  VD+++L  +T+ D +PIP I   L
Sbjct: 147 LLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATL 206

Query: 219 DELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLM 278
             L  A  F+ LDL SG+HQI MKE D+ KTAF T  G YEFL +PFGL NAP  FQ ++
Sbjct: 207 ASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMI 266

Query: 279 NQVFKPFLRHCVLVFFDD 291
           + + +  +     V+ DD
Sbjct: 267 DDILREHIGKVCYVYIDD 283

[Close]
BLAST of Cucsa.018390 vs. TrEMBL
Match: Q9SQW9_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=F23H6.1 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71
Identity = 136/193 (70.47%), Postives = 154/193 (79.79%), Query Frame = 1 

Query: 98  PMIRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIEKLVVE 157
           P I+ LL  Y  +F+TP+ LPP R  +  I       P+N+RPY+Y   QK EIEKLV E
Sbjct: 678 PAIQRLLDQYQGVFQTPQLLPPVRNREHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVRE 737

Query: 158 MLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELLDELNW 217
           ML A+ IRPS SPYSSPVLLVKKKDGGWRFCVDYR L + T+ DK+PIPVIEELLDEL  
Sbjct: 738 MLNAQIIRPSVSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKG 797

Query: 218 ATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLMNQVFK 277
           ATVFSKLDLKSGY QIRMK  DVEKTAF+THEGHYEFLVMPFGLTNAP+TFQS+MN +F+
Sbjct: 798 ATVFSKLDLKSGYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFR 857

Query: 278 PFLRHCVLVFFDD 291
           P+LR  VLVFFDD
Sbjct: 858 PYLRKFVLVFFDD 870

[Close]
BLAST of Cucsa.018390 vs. TrEMBL
Match: B5U9W4_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 9.7e-69
Identity = 131/198 (66.16%), Postives = 155/198 (78.28%), Query Frame = 1 

Query: 94  EEELPM-IRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIE 153
           E E+P  +R +L+ Y E+F+ PK LPP+R  D  I         N+RPY+Y   QK EIE
Sbjct: 583 EAEVPKGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIE 642

Query: 154 KLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELL 213
           KLV EML +  IR S SP+SSP +LVKKKDGGWRFCVDYR L + T+ DKFPIP+I+ELL
Sbjct: 643 KLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELL 702

Query: 214 DELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLM 273
           DE+  A VFSKLDLKSGYHQIRMKEED+ KTAFRTHEGHYE+LV+PFGLTNAP+TFQ+LM
Sbjct: 703 DEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALM 762

Query: 274 NQVFKPFLRHCVLVFFDD 291
           NQV +P+LR  VLVFFDD
Sbjct: 763 NQVLRPYLRKFVLVFFDD 780

[Close]
BLAST of Cucsa.018390 vs. TrEMBL
Match: B5U9W0_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-68
Identity = 131/198 (66.16%), Postives = 155/198 (78.28%), Query Frame = 1 

Query: 94  EEELPM-IRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIE 153
           E E+P  +R +L+ Y E+F+ PK LPP+R  D  I         N+RPY+Y   QK EIE
Sbjct: 583 EAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIE 642

Query: 154 KLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELL 213
           KLV EML +  IR S SP+SSP +LVKKKDGGWRFCVDYR L + T+ DKFPIP+I+ELL
Sbjct: 643 KLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELL 702

Query: 214 DELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLM 273
           DE+  A VFSKLDLKSGYHQIRMKEED+ KTAFRTHEGHYE+LV+PFGLTNAP+TFQ+LM
Sbjct: 703 DEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALM 762

Query: 274 NQVFKPFLRHCVLVFFDD 291
           NQV +P+LR  VLVFFDD
Sbjct: 763 NQVLRPYLRKFVLVFFDD 780

[Close]
BLAST of Cucsa.018390 vs. TrEMBL
Match: B5U9W2_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-68
Identity = 131/198 (66.16%), Postives = 155/198 (78.28%), Query Frame = 1 

Query: 94  EEELPM-IRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIE 153
           E E+P  +R +L+ Y E+F+ PK LPP+R  D  I         N+RPY+Y   QK EIE
Sbjct: 394 EAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIE 453

Query: 154 KLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELL 213
           KLV EML +  IR S SP+SSP +LVKKKDGGWRFCVDYR L + T+ DKFPIP+I+ELL
Sbjct: 454 KLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELL 513

Query: 214 DELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLM 273
           DE+  A VFSKLDLKSGYHQIRMKEED+ KTAFRTHEGHYE+LV+PFGLTNAP+TFQ+LM
Sbjct: 514 DEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALM 573

Query: 274 NQVFKPFLRHCVLVFFDD 291
           NQV +P+LR  VLVFFDD
Sbjct: 574 NQVLRPYLRKFVLVFFDD 591

[Close]
BLAST of Cucsa.018390 vs. TrEMBL
Match: B5U9W1_LOTJA (Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.3e-68
Identity = 131/198 (66.16%), Postives = 155/198 (78.28%), Query Frame = 1 

Query: 94  EEELPM-IRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIE 153
           E E+P  +R +L+ Y E+F+ PK LPP+R  D  I         N+RPY+Y   QK EIE
Sbjct: 583 EAEVPEGMRKILEEYPEVFQEPKGLPPRRTTDHAIQLQEGASIPNIRPYRYPFYQKNEIE 642

Query: 154 KLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELL 213
           KLV EML +  IR S SP+SSP +LVKKKDGGWRFCVDYR L + T+ DKFPIP+I+ELL
Sbjct: 643 KLVKEMLNSGIIRHSTSPFSSPAILVKKKDGGWRFCVDYRALNKATIPDKFPIPIIDELL 702

Query: 214 DELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLM 273
           DE+  A VFSKLDLKSGYHQIRMKEED+ KTAFRTHEGHYE+LV+PFGLTNAP+TFQ+LM
Sbjct: 703 DEIGAAVVFSKLDLKSGYHQIRMKEEDIPKTAFRTHEGHYEYLVLPFGLTNAPSTFQALM 762

Query: 274 NQVFKPFLRHCVLVFFDD 291
           NQV +P+LR  VLVFFDD
Sbjct: 763 NQVLRPYLRKFVLVFFDD 780

[Close]
BLAST of Cucsa.018390 vs. TAIR10
Match: ATMG00850.1 (ATMG00850.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-07
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 

Query: 146 VQKEEIEKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGW 186
           +++  ++  + EML AR I+PS SPYSSPVLLV+KKDGGW
Sbjct: 40  LRRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

[Close]
BLAST of Cucsa.018390 vs. NCBI nr
Match: gi|659109624|ref|XP_008454797.1| (PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 2.6e-91
Identity = 167/201 (83.08%), Postives = 180/201 (89.55%), Query Frame = 1 

Query: 90  LKGDEEELPMIRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKE 149
           ++GDE ++PMIR LL  YA+IFETPK LPPKR ID RILTLP+ +PIN RPYKYGHVQKE
Sbjct: 325 MRGDEADIPMIRFLLHQYADIFETPKGLPPKREIDYRILTLPEQRPINARPYKYGHVQKE 384

Query: 150 EIEKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIE 209
           EIEKLV EML+   IRPS SPYSSPVLLVKKKDGGWRFCVDYRKL Q T+SDKFPIPVIE
Sbjct: 385 EIEKLVAEMLQTGVIRPSRSPYSSPVLLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIE 444

Query: 210 ELLDELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQ 269
           ELLDEL+ A+VFSKLDLKSGYHQIRMKEED+EKTAFRTHEGHYEFL+M FGLTNAPTTFQ
Sbjct: 445 ELLDELHGASVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLIMSFGLTNAPTTFQ 504

Query: 270 SLMNQVFKPFLRHCVLVFFDD 291
           SLMNQVFKP LR  VLVFFDD
Sbjct: 505 SLMNQVFKPSLRRFVLVFFDD 525

[Close]
BLAST of Cucsa.018390 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 4.4e-91
Identity = 166/201 (82.59%), Postives = 178/201 (88.56%), Query Frame = 1 

Query: 90  LKGDEEELPMIRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKE 149
           +KGDEEE PMI+ LL+ Y ++FE PK LPPKR  D RIL +   KPINVRPYKYGH QKE
Sbjct: 551 VKGDEEESPMIQVLLQQYTDLFEEPKGLPPKRECDHRILLVTGQKPINVRPYKYGHTQKE 610

Query: 150 EIEKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIE 209
           EIEKL+ EML+   IRPSHSPYSSPVLLV+KKDGGWRFCVDYRKL Q+T+SDKFPIPVIE
Sbjct: 611 EIEKLISEMLQVGIIRPSHSPYSSPVLLVRKKDGGWRFCVDYRKLNQVTISDKFPIPVIE 670

Query: 210 ELLDELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQ 269
           ELLDEL+ ATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAP TFQ
Sbjct: 671 ELLDELHGATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQ 730

Query: 270 SLMNQVFKPFLRHCVLVFFDD 291
           SLMN VFKPFLR CVLVFFDD
Sbjct: 731 SLMNLVFKPFLRRCVLVFFDD 751

[Close]
BLAST of Cucsa.018390 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 3.2e-89
Identity = 164/200 (82.00%), Postives = 174/200 (87.00%), Query Frame = 1 

Query: 91  KGDEEELPMIRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEE 150
           KGDE ++PMIR LL+ Y +IF TPK LPPKR ID RILTLP+   INVRPYKYGH+QK E
Sbjct: 495 KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGE 554

Query: 151 IEKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEE 210
           IEKLV EML+   IRPS SPYS+PVLLVK KDGGWRFCVDYRKL Q TVSDKFPIPVIEE
Sbjct: 555 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGGWRFCVDYRKLNQATVSDKFPIPVIEE 614

Query: 211 LLDELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQS 270
           LLDEL  A +FSKLDLKSGYHQIRMKEED+EKT FRTHEGHYEFLVMPFGLTNAP TFQS
Sbjct: 615 LLDELYGAAIFSKLDLKSGYHQIRMKEEDIEKTTFRTHEGHYEFLVMPFGLTNAPATFQS 674

Query: 271 LMNQVFKPFLRHCVLVFFDD 291
           LMNQVFKPFLR CVLVFFDD
Sbjct: 675 LMNQVFKPFLRRCVLVFFDD 694

[Close]
BLAST of Cucsa.018390 vs. NCBI nr
Match: gi|6466937|gb|AAF13073.1|AC011621_1 (putative retroelement pol polyprotein [Arabidopsis thaliana])

HSP 1 Score: 277.7 bits (709), Expect = 2.3e-71
Identity = 136/193 (70.47%), Postives = 154/193 (79.79%), Query Frame = 1 

Query: 98  PMIRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPYKYGHVQKEEIEKLVVE 157
           P I+ LL  Y  +F+TP+ LPP R  +  I       P+N+RPY+Y   QK EIEKLV E
Sbjct: 678 PAIQRLLDQYQGVFQTPQLLPPVRNREHAITLQEGSSPVNIRPYRYSFAQKNEIEKLVRE 737

Query: 158 MLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSDKFPIPVIEELLDELNW 217
           ML A+ IRPS SPYSSPVLLVKKKDGGWRFCVDYR L + T+ DK+PIPVIEELLDEL  
Sbjct: 738 MLNAQIIRPSVSPYSSPVLLVKKKDGGWRFCVDYRALNEATIPDKYPIPVIEELLDELKG 797

Query: 218 ATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPTTFQSLMNQVFK 277
           ATVFSKLDLKSGY QIRMK  DVEKTAF+THEGHYEFLVMPFGLTNAP+TFQS+MN +F+
Sbjct: 798 ATVFSKLDLKSGYFQIRMKLSDVEKTAFKTHEGHYEFLVMPFGLTNAPSTFQSVMNDLFR 857

Query: 278 PFLRHCVLVFFDD 291
           P+LR  VLVFFDD
Sbjct: 858 PYLRKFVLVFFDD 870

[Close]
BLAST of Cucsa.018390 vs. NCBI nr
Match: gi|923653455|ref|XP_013645200.1| (PREDICTED: uncharacterized protein K02A2.6-like [Brassica napus])

HSP 1 Score: 275.0 bits (702), Expect = 1.5e-70
Identity = 137/209 (65.55%), Postives = 164/209 (78.47%), Query Frame = 1 

Query: 82  TLLQFGTSLKGDEEELPMIRSLLKYYAEIFETPKKLPPKRAIDRRILTLPDHKPINVRPY 141
           TL +  T+ K +++   M+ +LLK +A +F+ P  LPPKR+ +  I       PINVRPY
Sbjct: 525 TLFESATTEK-EKKPGQMVTTLLKKFAGVFQMPNNLPPKRSREHAITLQEGSSPINVRPY 584

Query: 142 KYGHVQKEEIEKLVVEMLRARNIRPSHSPYSSPVLLVKKKDGGWRFCVDYRKLTQLTVSD 201
           +Y H QK EIEKLV EML+A  IRPS SP+SSPVLLVKKKDGG RFCVDYR + + T+SD
Sbjct: 585 RYSHTQKNEIEKLVKEMLQAGIIRPSISPFSSPVLLVKKKDGGLRFCVDYRAVNKSTISD 644

Query: 202 KFPIPVIEELLDELNWATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGL 261
           ++PIPVIEELLDEL  AT+FSKLDLKSGYHQIR++  DV KTAF+ HEGHYEFLVMPFGL
Sbjct: 645 RYPIPVIEELLDELAGATIFSKLDLKSGYHQIRVRAGDVGKTAFKPHEGHYEFLVMPFGL 704

Query: 262 TNAPTTFQSLMNQVFKPFLRHCVLVFFDD 291
           TNAP TFQS+MN +FKP+LR  VLVFFDD
Sbjct: 705 TNAPVTFQSVMNDIFKPYLRRFVLVFFDD 732

The following BLAST results are available for this feature:
BLAST of Cucsa.018390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL2_DROME9.1e-3639.71Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
YI31B_YEAST3.8e-3444.33Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YG31B_YEAST3.8e-3444.33Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
POL3_DROME6.5e-3445.81Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
POL5_DROME8.0e-3239.39Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
BLAST of Cucsa.018390 vs. TrEMBL
Match NameE-valueIdentityDescription
Q9SQW9_ARATH1.6e-7170.47Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=F23H6.1 PE=4 SV... [more]
B5U9W4_LOTJA9.7e-6966.16Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
B5U9W0_LOTJA1.3e-6866.16Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
B5U9W2_LOTJA1.3e-6866.16Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
B5U9W1_LOTJA1.3e-6866.16Putative uncharacterized protein OS=Lotus japonicus PE=4 SV=1[more]
BLAST of Cucsa.018390 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00850.15.5e-0760.00ATMG00850.1 DNA/RNA polymerases superfamily protein[more]
BLAST of Cucsa.018390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109624|ref|XP_008454797.1|2.6e-9183.08PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo][more]
gi|778697580|ref|XP_011654353.1|4.4e-9182.59PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659094491|ref|XP_008448087.1|3.2e-8982.00PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
gi|6466937|gb|AAF13073.1|AC011621_12.3e-7170.47putative retroelement pol polyprotein [Arabidopsis thaliana][more]
gi|923653455|ref|XP_013645200.1|1.5e-7065.55PREDICTED: uncharacterized protein K02A2.6-like [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.018390.1Cucsa.018390.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 178..290
score: 5.5
IPR000477Reverse transcriptase domainPROFILEPS50878RT_POLcoord: 159..290
score: 12
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 130..272
score: 2.4
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 171..290
score: 4.6
NoneNo IPR availablePANTHERPTHR24559:SF186SUBFAMILY NOT NAMEDcoord: 171..290
score: 4.6
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 104..290
score: 1.78

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.018390Cucumber (Chinese Long) v3cgycucB405
Cucsa.018390Watermelon (97103) v2cgywmbB462
Cucsa.018390Wax gourdcgywgoB539
Cucsa.018390Cucurbita maxima (Rimu)cgycmaB0737
Cucsa.018390Cucurbita moschata (Rifu)cgycmoB0726
Cucsa.018390Wild cucumber (PI 183967)cgycpiB400
Cucsa.018390Cucumber (Chinese Long) v2cgycuB380
Cucsa.018390Melon (DHL92) v3.5.1cgymeB441
Cucsa.018390Watermelon (Charleston Gray)cgywcgB461
Cucsa.018390Watermelon (97103) v1cgywmB488
Cucsa.018390Cucurbita pepo (Zucchini)cgycpeB0696
Cucsa.018390Bottle gourd (USVL1VR-Ls)cgylsiB427
Cucsa.018390Melon (DHL92) v3.6.1cgymedB437
Cucsa.018390Silver-seed gourdcarcgyB0749