Cucsa.017970 (gene) Cucumber (Gy14) v1

NameCucsa.017970
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCopia protein
Locationscaffold00252 : 234947 .. 235984 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTCTCTTCTGTTATCCTATCTCTCAAGGAAGAACAGAAACCCTTTTCCTTGTCAATTTCTAACTGCCTTTCCCGCCCACACTTATTCTTTATTTATACTAACCTAACTCACGTGTTACTCTACACACATGTTGTGCTACTACCCTTCTTTCCTCTCCTACTATATTGATATAGTATTGGGGGTCTATCAATCTCCTGATCATGCGCTTCCATTTTCTCCTCCATGCATGTTTGAACCATTGTATTCCTCTTGCCCAGAAAAGTTGGCTTTGATACCAATTTGATGGAACTCCTTTTGGAATTTAGTTATAGAAAATTTATTGCTTCAATTCGAAAGATGAATTACTAGGAAAAAATCACACGAAAAGAACAATCGAATTTAGGAGATCTCAATTTGGTCGACAATCTAACTCTCTCTCTGCTATCCTCTCTCTCAAAGAAGAGCATGAGCGAAATCTTCGTCTCTTTCTTTTTCCTTCTACTATATTGCAGTATGATAGGGGGTCTATCAGAAAGTTGATTTACTTATCTCACACTAGGCCTAACATCTCCTATGCTGGGAGCATCGTCAGTCAAATCATGCAAGCACCTTATGAGGATCATATGGAAGCGATTAATAGGATTATGAGGTATTTAAAAGCAACTCCTAGTAAAAGTCTGAGATTTAGGAAGACCGACAAAAGATGTATTAAAGCTTATATTGATTATGACTGGACATGATCTGTTGTTGATAGAAAGTCTACCTCATGATACTGTACTTTTGTGTCGGACAATTTTGTTACTTGGAGAAGTAAGAAGCAAGGAGTTGTGGCTAGAAGTAAAGTTGAAGTCGAATATAGGGCTATGAGTTTGGGGATTTGTGAGATCTGGCTCCAAAAGGTGTTGTCAGATTTTTGTCAATACTATGAGGTCCCTATGAAGCTATTCTTCGATAACAAGGCAACCATTAACATTGCAAATAACTCAGTCCAACATGACAGGACTAAACATGTGGAGATTGACAGACTCTTTATCAAAGAGAAGCTTGATGATG

mRNA sequence

ATGAAACTCtcttctgttatcctatctctcaaggaagaacagaaacccttttccttgtcaatttctaacttattgggggtctatcaatctcctgatcatgcgcttccattttctcctccatgcatgtttgaaccattggggtctatCAgaaagttgatttacttatctcacactaggcctaacatctcctatgctgggagcatcgtcagtcaaatcatgcaagcaccttatgaggatcatatggaagcgattaataggattatgagaagtaagaagcaaggagttgtggctagaagtaaagttgaagtcgaatatagggctatgagtttggggatttgtgagatctggctccaaaaggtgttgtcagatttttgtcaatactatgaggtccctatgaagctattcttcgataacaaggcaaccattaacattgcaaataactcagtccaacatgacaggactaaacatgtggagattgacagactctttatcaaagagaagcttgatgatg

Coding sequence (CDS)

ATGAAACTCTCTTCTGTTATCCTATCTCTCAAGGAAGAACAGAAACCCTTTTCCTTGTCAATTTCTAACTTATTGGGGGTCTATCAATCTCCTGATCATGCGCTTCCATTTTCTCCTCCATGCATGTTTGAACCATTGGGGTCTATCAGAAAGTTGATTTACTTATCTCACACTAGGCCTAACATCTCCTATGCTGGGAGCATCGTCAGTCAAATCATGCAAGCACCTTATGAGGATCATATGGAAGCGATTAATAGGATTATGAGAAGTAAGAAGCAAGGAGTTGTGGCTAGAAGTAAAGTTGAAGTCGAATATAGGGCTATGAGTTTGGGGATTTGTGAGATCTGGCTCCAAAAGGTGTTGTCAGATTTTTGTCAATACTATGAGGTCCCTATGAAGCTATTCTTCGATAACAAGGCAACCATTAACATTGCAAATAACTCAGTCCAACATGACAGGACTAAACATGTGGAGATTGACAGACTCTTTATCAAAGAGAAGCTTGATGATG

Protein sequence

MKLSSVILSLKEEQKPFSLSISNLLGVYQSPDHALPFSPPCMFEPLGSIRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMRSKKQGVVARSKVEVEYRAMSLGICEIWLQKVLSDFCQYYEVPMKLFFDNKATINIANNSVQHDRTKHVEIDRLFIKEKLDDX
BLAST of Cucsa.017970 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 58.5 bits (140), Expect = 8.1e-08
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 1

Query: 64   YAGSIVSQIMQAPYEDHMEAINRIM-RSKKQGVVARSKVEVEYRAMSLGICE-IWLQKVL 123
            +AGS + +     Y   M   N I   +K+Q  VA S  E EY A+   + E +WL+ +L
Sbjct: 1256 WAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLL 1315

Query: 124  SDFCQYYEVPMKLFFDNKATINIANNSVQHDRTKHVEIDRLFIKEKLDD 171
            +      E P+K++ DN+  I+IANN   H R KH++I   F +E++ +
Sbjct: 1316 TSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQN 1364

BLAST of Cucsa.017970 vs. TrEMBL
Match: A5AF46_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039504 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-29
Identity = 71/141 (50.35%), Postives = 93/141 (65.96%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMR------------------S 108
           + +L+YL+HTRP+++YA S+VSQ M  P E HM A+ RI+R                  S
Sbjct: 805 VERLMYLAHTRPDLAYALSVVSQYMHNPGEQHMNAVMRILRRSTFGYFTFVGGNLVTWKS 864

Query: 109 KKQGVVARSKVEVEYRAMSLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKATINIANNSV 168
           KKQ VVARS  E E+R ++LG+CE +WL+ +L D       P++LF DNKA  +IA+N V
Sbjct: 865 KKQNVVARSSAEAEFRGIALGLCEALWLRLLLQDLGYLSRQPIRLFCDNKAACDIAHNLV 924

Query: 169 QHDRTKHVEIDRLFIKEKLDD 171
           QHD TKHVE+DR FIKEKLDD
Sbjct: 925 QHDHTKHVEVDRFFIKEKLDD 945

BLAST of Cucsa.017970 vs. TrEMBL
Match: A0A151THQ0_CAJCA (Copia protein OS=Cajanus cajan GN=KK1_012854 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.8e-29
Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIM-------------------- 108
           + +LIYLSHTRP+I++A S+VSQ M  P E H++A  RI+                    
Sbjct: 16  VGRLIYLSHTRPDIAFAVSLVSQFMHQPKEAHLQAALRIVQYLKGTPGRGILFKRNKMTW 75

Query: 109 RSKKQGVVARSKVEVEYRAMSLGICEI-WLQKVLSDFCQYYEVPMKLFFDNKATINIANN 168
           +SKKQ VVARS  E E+RAM+ GICE+ WL+ +L D    ++ PM+L+ DNK+ I+IA+N
Sbjct: 76  KSKKQSVVARSSAEAEFRAMAHGICELLWLKIILEDLKIKWDEPMRLYCDNKSAISIAHN 135

Query: 169 SVQHDRTKHVEIDRLFIKEKLD 170
            VQHDRTKH+E+DR FIKEKLD
Sbjct: 136 PVQHDRTKHIEVDRHFIKEKLD 157

BLAST of Cucsa.017970 vs. TrEMBL
Match: A5AS05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013040 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.9e-29
Identity = 72/150 (48.00%), Postives = 94/150 (62.67%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMR------------------- 108
           + +L+YL+HTRP+++YA S+VSQ M  P E HM A+ RI+R                   
Sbjct: 488 VGRLMYLAHTRPDLAYALSVVSQYMHNPGEQHMNAVMRILRYLKNAPRKGILFTKNVDHQ 547

Query: 109 --------SKKQGVVARSKVEVEYRAMSLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKA 168
                   SKKQ VV RS  E E+R M+LG+CE +WL+ +L D       P++LF DNKA
Sbjct: 548 SGNLVTWKSKKQNVVTRSSAEAEFRGMALGLCETLWLRLLLHDLGYLSRQPIRLFCDNKA 607

Query: 169 TINIANNSVQHDRTKHVEIDRLFIKEKLDD 171
           T +IA+N VQHDRTKHV++DR FIKEKLDD
Sbjct: 608 TCDIAHNPVQHDRTKHVKVDRFFIKEKLDD 637

BLAST of Cucsa.017970 vs. TrEMBL
Match: A0A151UHL2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_049586 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-28
Identity = 69/138 (50.00%), Postives = 94/138 (68.12%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMR----------------SKK 108
           + +L+YL+HTRP+++YA S+VSQ M  P E HM A+  I+R                SKK
Sbjct: 141 VGRLMYLAHTRPDLTYALSVVSQYMHNPGEKHMNAVMHILRYLKSAPGRGGNLVTWRSKK 200

Query: 109 QGVVARSKVEVEYRAMSLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKATINIANNSVQH 168
           Q VVARS  E E+RAM+LG+CE +WL+ +L D     + P++L+ DNKA  +IA+N VQH
Sbjct: 201 QSVVARSSAEAEFRAMALGLCEALWLKLLLEDLGYSTKQPIQLYCDNKAACDIAHNPVQH 260

Query: 169 DRTKHVEIDRLFIKEKLD 170
           DRTKH+E+D+ FIKEKLD
Sbjct: 261 DRTKHIEVDKFFIKEKLD 278

BLAST of Cucsa.017970 vs. TrEMBL
Match: A5ANL3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021018 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 75/145 (51.72%), Postives = 92/145 (63.45%), Query Frame = 1

Query: 49   IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMRS------------------ 108
            + KLIYLSHTRPNI ++ S+VSQ M  P E HM A+ RI+R                   
Sbjct: 970  VGKLIYLSHTRPNIGFSVSVVSQFMNNPTEKHMTAVIRILRYLKMTLGKGYCSFVWGNLV 1029

Query: 109  ----KKQGVVARSKVEVEYRAMSLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKATINIA 168
                KKQ VVARS  E E+RAM+ GICE IWL K+L +     + PM L+ DN+ATI+IA
Sbjct: 1030 TWRSKKQSVVARSSAEAEFRAMAQGICEGIWLNKLLEELGVPLKHPMVLYCDNQATISIA 1089

Query: 169  NNSVQHDRTKHVEIDRLFIKEKLDD 171
             N V HDRTKHVEIDR FIKEK+++
Sbjct: 1090 KNPVHHDRTKHVEIDRHFIKEKIEE 1114

BLAST of Cucsa.017970 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-11
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 89  RSKKQGVVARSKVEVEYRAMSLGICEI-WLQKVLSDFCQYYEVPMKLFFDNKATINIANN 148
           +SKKQ VV++S  E EYRA+S    E+ WL +   +       P  LF DN A I+IA N
Sbjct: 475 KSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATN 534

Query: 149 SVQHDRTKHVEIDRLFIKEK 168
           +V H+RTKH+E D   ++E+
Sbjct: 535 AVFHERTKHIESDCHSVRER 554

BLAST of Cucsa.017970 vs. NCBI nr
Match: gi|147817716|emb|CAN71214.1| (hypothetical protein VITISV_039504 [Vitis vinifera])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 71/141 (50.35%), Postives = 93/141 (65.96%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMR------------------S 108
           + +L+YL+HTRP+++YA S+VSQ M  P E HM A+ RI+R                  S
Sbjct: 805 VERLMYLAHTRPDLAYALSVVSQYMHNPGEQHMNAVMRILRRSTFGYFTFVGGNLVTWKS 864

Query: 109 KKQGVVARSKVEVEYRAMSLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKATINIANNSV 168
           KKQ VVARS  E E+R ++LG+CE +WL+ +L D       P++LF DNKA  +IA+N V
Sbjct: 865 KKQNVVARSSAEAEFRGIALGLCEALWLRLLLQDLGYLSRQPIRLFCDNKAACDIAHNLV 924

Query: 169 QHDRTKHVEIDRLFIKEKLDD 171
           QHD TKHVE+DR FIKEKLDD
Sbjct: 925 QHDHTKHVEVDRFFIKEKLDD 945

BLAST of Cucsa.017970 vs. NCBI nr
Match: gi|657979881|ref|XP_008381914.1| (PREDICTED: uncharacterized protein LOC103444742 [Malus domestica])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 73/122 (59.84%), Postives = 88/122 (72.13%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMRSKKQGVVARSKVEVEYRAM 108
           + +LIYLSHTRP+I+YA S+VSQ M +P E HM+      RSKKQ VVARS  E E+R M
Sbjct: 226 VGRLIYLSHTRPDIAYAVSVVSQFMHSPSEAHMDGNLVTWRSKKQKVVARSSXEAEFRGM 285

Query: 109 SLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKATINIANNSVQHDRTKHVEIDRLFIKEK 168
           S G+CE +WL K+L D    ++  MKL  DNKA I IA+N VQHDRTKHVEIDR  IKEK
Sbjct: 286 SHGVCELLWLXKLLRDLGFKHKGAMKLHCDNKAAIEIAHNPVQHDRTKHVEIDRHXIKEK 345

Query: 169 LD 170
           L+
Sbjct: 346 LE 347

BLAST of Cucsa.017970 vs. NCBI nr
Match: gi|731407939|ref|XP_010656665.1| (PREDICTED: uncharacterized protein LOC104880724, partial [Vitis vinifera])

HSP 1 Score: 136.3 bits (342), Expect = 4.9e-29
Identity = 71/123 (57.72%), Postives = 89/123 (72.36%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMRSKKQGVVARSKVEVEYRAM 108
           + KLIYLSHTRP+I ++ S+VS+ M  P E HM       RSKKQ VVARS  EVE+RAM
Sbjct: 795 VGKLIYLSHTRPDIGFSVSVVSRFMNNPTEKHMRGNLVTWRSKKQSVVARSSAEVEFRAM 854

Query: 109 SLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKATINIANNSVQHDRTKHVEIDRLFIKEK 168
           + GICE IWL ++L +     + PM L+ DN+ATI+IA N V HDRTKHVEIDR FIKEK
Sbjct: 855 AQGICEGIWLNRLLEELRVPLKHPMVLYCDNQATISIAKNPVHHDRTKHVEIDRHFIKEK 914

Query: 169 LDD 171
           +++
Sbjct: 915 IEE 917

BLAST of Cucsa.017970 vs. NCBI nr
Match: gi|1012355371|gb|KYP66558.1| (Copia protein [Cajanus cajan])

HSP 1 Score: 135.6 bits (340), Expect = 8.3e-29
Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIM-------------------- 108
           + +LIYLSHTRP+I++A S+VSQ M  P E H++A  RI+                    
Sbjct: 16  VGRLIYLSHTRPDIAFAVSLVSQFMHQPKEAHLQAALRIVQYLKGTPGRGILFKRNKMTW 75

Query: 109 RSKKQGVVARSKVEVEYRAMSLGICEI-WLQKVLSDFCQYYEVPMKLFFDNKATINIANN 168
           +SKKQ VVARS  E E+RAM+ GICE+ WL+ +L D    ++ PM+L+ DNK+ I+IA+N
Sbjct: 76  KSKKQSVVARSSAEAEFRAMAHGICELLWLKIILEDLKIKWDEPMRLYCDNKSAISIAHN 135

Query: 169 SVQHDRTKHVEIDRLFIKEKLD 170
            VQHDRTKH+E+DR FIKEKLD
Sbjct: 136 PVQHDRTKHIEVDRHFIKEKLD 157

BLAST of Cucsa.017970 vs. NCBI nr
Match: gi|147857538|emb|CAN82537.1| (hypothetical protein VITISV_013040 [Vitis vinifera])

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 72/150 (48.00%), Postives = 94/150 (62.67%), Query Frame = 1

Query: 49  IRKLIYLSHTRPNISYAGSIVSQIMQAPYEDHMEAINRIMR------------------- 108
           + +L+YL+HTRP+++YA S+VSQ M  P E HM A+ RI+R                   
Sbjct: 488 VGRLMYLAHTRPDLAYALSVVSQYMHNPGEQHMNAVMRILRYLKNAPRKGILFTKNVDHQ 547

Query: 109 --------SKKQGVVARSKVEVEYRAMSLGICE-IWLQKVLSDFCQYYEVPMKLFFDNKA 168
                   SKKQ VV RS  E E+R M+LG+CE +WL+ +L D       P++LF DNKA
Sbjct: 548 SGNLVTWKSKKQNVVTRSSAEAEFRGMALGLCETLWLRLLLHDLGYLSRQPIRLFCDNKA 607

Query: 169 TINIANNSVQHDRTKHVEIDRLFIKEKLDD 171
           T +IA+N VQHDRTKHV++DR FIKEKLDD
Sbjct: 608 TCDIAHNPVQHDRTKHVKVDRFFIKEKLDD 637

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
COPIA_DROME8.1e-0833.94Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A5AF46_VITVI2.6e-2950.35Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039504 PE=4 SV=1[more]
A0A151THQ0_CAJCA5.8e-2950.70Copia protein OS=Cajanus cajan GN=KK1_012854 PE=4 SV=1[more]
A5AS05_VITVI9.9e-2948.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013040 PE=4 SV=1[more]
A0A151UHL2_CAJCA1.3e-2850.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A5ANL3_VITVI1.7e-2851.72Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021018 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23160.14.9e-1143.75 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
Match NameE-valueIdentityDescription
gi|147817716|emb|CAN71214.1|3.7e-2950.35hypothetical protein VITISV_039504 [Vitis vinifera][more]
gi|657979881|ref|XP_008381914.1|3.7e-2959.84PREDICTED: uncharacterized protein LOC103444742 [Malus domestica][more]
gi|731407939|ref|XP_010656665.1|4.9e-2957.72PREDICTED: uncharacterized protein LOC104880724, partial [Vitis vinifera][more]
gi|1012355371|gb|KYP66558.1|8.3e-2950.70Copia protein [Cajanus cajan][more]
gi|147857538|emb|CAN82537.1|1.4e-2848.00hypothetical protein VITISV_013040 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0043167 ion binding
molecular_function GO:0097159 organic cyclic compound binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.017970.1Cucsa.017970.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 49..132
score: 1.6
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 49..132
score: 1.6

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None