Cucsa.017960 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.017960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRNA exonuclease
Locationscaffold00252 : 230026 .. 230290 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATGATATTTGGCAAGATGGGCACGACCCTTACGAAAACTGTGTTTCAGTAATGCGATTGTATAAAAGAATGCGTAGTCTTGATCACCATAGACAAGTTATGACCCTGTCAATTACTCCTTCCTGTATCCAGTATGTTGCTCCCAATCTTGATTCCCATAGTGCAAAAGATCTTGAAAAGATGACTCCAGATGAACTTTATGAGATGTCGAGATCAAACTTTAAGTGTTGGTGTCATGACTCCAGACGAGTTATGCAGACTTAG

mRNA sequence

GTATGATATTTGGCAAGATGGGCACGACCCTTACGAAAACTGTGTTTCAGTAATGCGATTGTATAAAAGAATGCGTAGTCTTGATCACCATAGACAAGTTATGACCCTGTCAATTACTCCTTCCTGTATCCAGTATGTTGCTCCCAATCTTGATTCCCATAGTGCAAAAGATCTTGAAAAGATGACTCCAGATGAACTTTATGAGATGTCGAGATCAAACTTTAAGTGTTGGTGTCATGACTCCAGACGAGTTATGCAGACTTAG

Coding sequence (CDS)

GTATGATATTTGGCAAGATGGGCACGACCCTTACGAAAACTGTGTTTCAGTAATGCGATTGTATAAAAGAATGCGTAGTCTTGATCACCATAGACAAGTTATGACCCTGTCAATTACTCCTTCCTGTATCCAGTATGTTGCTCCCAATCTTGATTCCCATAGTGCAAAAGATCTTGAAAAGATGACTCCAGATGAACTTTATGAGATGTCGAGATCAAACTTTAAGTGTTGGTGTCATGACTCCAGACGAGTTATGCAGACTTAG

Protein sequence

YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHDSRRVMQT*
Homology
[Close]
BLAST of Cucsa.017960 vs. TrEMBL
Match: A0A0A0L1Q7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338955 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.9e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 18 MRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCW 77
          MRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCW
Sbjct: 1  MRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCW 60

Query: 78 CHDSRRVMQT 88
          CHDSRRVMQT
Sbjct: 61 CHDSRRVMQT 70

[Close]
BLAST of Cucsa.017960 vs. TrEMBL
Match: W9R6Z2_9ROSA (RNA exonuclease 4 OS=Morus notabilis GN=L484_025026 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-18
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI    HDPYE+CVSVMRLYKRMR L+HH++ +  S      Q    N  S + K+LEK
Sbjct: 282 YDIQTGFHDPYEDCVSVMRLYKRMRDLEHHKESIEGSFATHGSQNHFNNFTSWNTKELEK 341

Query: 61  MTPDELYEMSRSNFKCWCHD 81
           MTPDELY++SRSN++CWC D
Sbjct: 342 MTPDELYQLSRSNYRCWCLD 361

[Close]
BLAST of Cucsa.017960 vs. TrEMBL
Match: M5W127_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022881mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.0e-18
Identity = 46/86 (53.49%), Postives = 56/86 (65.12%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI    HDPYE+CVS MRLYKR  +LDH ++    S+   C + +  + DS     LEK
Sbjct: 256 YDIQSGFHDPYEDCVSAMRLYKRFCALDHQKEGNVASLAMLCAKDIPGSFDSWETDKLEK 315

Query: 61  MTPDELYEMSRSNFKCWCHDSRRVMQ 87
           MT DELYEMSR N+KCWC DS + MQ
Sbjct: 316 MTLDELYEMSRPNYKCWCLDSVQAMQ 341

[Close]
BLAST of Cucsa.017960 vs. TrEMBL
Match: A0A0J8CMZ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g083690 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.9e-17
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI    HDPYE+CVSVMRLYKRMR  DH +  +   +     +++    +    KDLEK
Sbjct: 249 YDIQMGVHDPYEDCVSVMRLYKRMRDQDHLKDFIGACLPSHVTEFLTNEFEYCKMKDLEK 308

Query: 61  MTPDELYEMSRSNFKCWCHD 81
           +TPDELYEMSRS ++CWC D
Sbjct: 309 LTPDELYEMSRSKYRCWCLD 328

[Close]
BLAST of Cucsa.017960 vs. TrEMBL
Match: A0A0J8CN12_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g083690 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.9e-17
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI    HDPYE+CVSVMRLYKRMR  DH +  +   +     +++    +    KDLEK
Sbjct: 298 YDIQMGVHDPYEDCVSVMRLYKRMRDQDHLKDFIGACLPSHVTEFLTNEFEYCKMKDLEK 357

Query: 61  MTPDELYEMSRSNFKCWCHD 81
           +TPDELYEMSRS ++CWC D
Sbjct: 358 LTPDELYEMSRSKYRCWCLD 377

[Close]
BLAST of Cucsa.017960 vs. TAIR10
Match: AT5G40310.1 (AT5G40310.1 Exonuclease family protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-11
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI     DPYE+CV+ MRLY RMR   H  +   L+           N  +    +LE+
Sbjct: 270 YDIHVGIQDPYEDCVATMRLYTRMRYQKHRAEAYPLASDTQNHN----NFAAWRQNELER 329

Query: 61  MTPDELYEMSRSNFKCWCHDS 82
           M+P+EL ++SRS++ CWC DS
Sbjct: 330 MSPEELLDLSRSDYYCWCLDS 346

[Close]
BLAST of Cucsa.017960 vs. TAIR10
Match: AT2G48100.1 (AT2G48100.1 Exonuclease family protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.6e-11
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPN-LDSHSAKDLE 60
           Y I    H+ YE+CVS MRLYKRMR  +H            C      N L+S    DLE
Sbjct: 270 YKIQCGKHEVYEDCVSAMRLYKRMRDQEH-----------VCSGKAEGNGLNSRKQSDLE 329

Query: 61  KMTPDELYEMSRSNFKCWCHD 81
           KM  +ELY+ S S ++CWC D
Sbjct: 330 KMNAEELYQKSTSEYRCWCLD 339

[Close]
BLAST of Cucsa.017960 vs. TAIR10
Match: AT3G27970.1 (AT3G27970.1 Exonuclease family protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-10
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSA---KD 60
           YD+     DPYE+CV+ MRLY RMR   H  +   L+         A N  +  A    +
Sbjct: 279 YDVHFGIQDPYEDCVATMRLYTRMRYQKHKIEAYPLAAD-------AQNRSNQVAWRQSE 338

Query: 61  LEKMTPDELYEMSRSNFKCWCHDS 82
            E+M+PDE+  +SRS++ CWC DS
Sbjct: 339 AERMSPDEMLSISRSDYYCWCLDS 355

[Close]
BLAST of Cucsa.017960 vs. NCBI nr
Match: gi|449449811|ref|XP_004142658.1| (PREDICTED: apoptosis-enhancing nuclease isoform X2 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI QDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK
Sbjct: 264 YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 323

Query: 61  MTPDELYEMSRSNFKCWCHDSRRVMQT 88
           MTPDELYEMSRSNFKCWCHDSRRVMQT
Sbjct: 324 MTPDELYEMSRSNFKCWCHDSRRVMQT 350

[Close]
BLAST of Cucsa.017960 vs. NCBI nr
Match: gi|778694140|ref|XP_011653750.1| (PREDICTED: apoptosis-enhancing nuclease isoform X1 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI QDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK
Sbjct: 277 YDIRQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 336

Query: 61  MTPDELYEMSRSNFKCWCHDSRRVMQT 88
           MTPDELYEMSRSNFKCWCHDSRRVMQT
Sbjct: 337 MTPDELYEMSRSNFKCWCHDSRRVMQT 363

[Close]
BLAST of Cucsa.017960 vs. NCBI nr
Match: gi|659069342|ref|XP_008449328.1| (PREDICTED: RNA exonuclease 4-like [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 8.9e-43
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI QDGHDPYENCVSVMRLYKRMRSLDH RQVMTLS+TPSCIQYVAPNLDSHSAKDLEK
Sbjct: 214 YDIRQDGHDPYENCVSVMRLYKRMRSLDHRRQVMTLSVTPSCIQYVAPNLDSHSAKDLEK 273

Query: 61  MTPDELYEMSRSNFKCWCHDSRRVMQT 88
           MTPDELYEMSR+NFKCWCHDSRRVMQT
Sbjct: 274 MTPDELYEMSRTNFKCWCHDSRRVMQT 300

[Close]
BLAST of Cucsa.017960 vs. NCBI nr
Match: gi|659131022|ref|XP_008465475.1| (PREDICTED: RNA exonuclease 4-like [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-42
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI QDGHDPYENCVSVMRLYKRMRSLDH RQVMT S+TPSCIQYVAPNLDSHSAKDLEK
Sbjct: 214 YDIRQDGHDPYENCVSVMRLYKRMRSLDHRRQVMTRSVTPSCIQYVAPNLDSHSAKDLEK 273

Query: 61  MTPDELYEMSRSNFKCWCHDSRRVMQT 88
           MTPDELYEMSR+NFKCWCHDSRRVMQT
Sbjct: 274 MTPDELYEMSRTNFKCWCHDSRRVMQT 300

[Close]
BLAST of Cucsa.017960 vs. NCBI nr
Match: gi|659111761|ref|XP_008455895.1| (PREDICTED: uncharacterized protein LOC103495972 isoform X1 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 1 

Query: 1   YDIWQDGHDPYENCVSVMRLYKRMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEK 60
           YDI QDGHDPYENCVSVMRLYKRMRSLDH RQVMT S T   IQYVAPNLDS+SAKDLEK
Sbjct: 277 YDIRQDGHDPYENCVSVMRLYKRMRSLDHRRQVMTPSATSPYIQYVAPNLDSYSAKDLEK 336

Query: 61  MTPDELYEMSRSNFKCWCHDSRRVMQT 88
           MTPDELYEMSRSNFKCWCHDSRRVMQT
Sbjct: 337 MTPDELYEMSRSNFKCWCHDSRRVMQT 363

The following BLAST results are available for this feature:
BLAST of Cucsa.017960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1Q7_CUCSA8.9e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G338955 PE=4 SV=1[more]
W9R6Z2_9ROSA1.8e-1857.50RNA exonuclease 4 OS=Morus notabilis GN=L484_025026 PE=4 SV=1[more]
M5W127_PRUPE9.0e-1853.49Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022881mg PE=4 S... [more]
A0A0J8CMZ4_BETVU9.9e-1752.50Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g083690 PE=4 S... [more]
A0A0J8CN12_BETVU9.9e-1752.50Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g083690 PE=4 S... [more]
BLAST of Cucsa.017960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G40310.12.5e-1140.74 Exonuclease family protein[more]
AT2G48100.15.6e-1143.21 Exonuclease family protein[more]
AT3G27970.14.7e-1039.29 Exonuclease family protein[more]
BLAST of Cucsa.017960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449811|ref|XP_004142658.1|3.6e-4498.85PREDICTED: apoptosis-enhancing nuclease isoform X2 [Cucumis sativus][more]
gi|778694140|ref|XP_011653750.1|3.6e-4498.85PREDICTED: apoptosis-enhancing nuclease isoform X1 [Cucumis sativus][more]
gi|659069342|ref|XP_008449328.1|8.9e-4395.40PREDICTED: RNA exonuclease 4-like [Cucumis melo][more]
gi|659131022|ref|XP_008465475.1|4.4e-4294.25PREDICTED: RNA exonuclease 4-like [Cucumis melo][more]
gi|659111761|ref|XP_008455895.1|2.3e-3890.80PREDICTED: uncharacterized protein LOC103495972 isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.017960.1Cucsa.017960.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12801EXONUCLEASEcoord: 1..81
score: 1.4
NoneNo IPR availablePANTHERPTHR12801:SF66EXONUCLEASE-LIKE PROTEINcoord: 1..81
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.017960CSPI04G17050Wild cucumber (PI 183967)cgycpiB400
Cucsa.017960CsaV3_4G027590Cucumber (Chinese Long) v3cgycucB405
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.017960Cucurbita maxima (Rimu)cgycmaB0738
Cucsa.017960Cucurbita maxima (Rimu)cgycmaB0740
Cucsa.017960Cucurbita moschata (Rifu)cgycmoB0728
Cucsa.017960Cucurbita moschata (Rifu)cgycmoB0730
Cucsa.017960Cucumber (Chinese Long) v2cgycuB380
Cucsa.017960Cucurbita pepo (Zucchini)cgycpeB0693
Cucsa.017960Cucurbita pepo (Zucchini)cgycpeB0694
Cucsa.017960Silver-seed gourdcarcgyB0547