Cucsa.017910 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.017910
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00252 : 149586 .. 150373 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGATGAATCTAAGTTGTCGATTATTGAAGTTCTGAAACGAGACTATTCTCTTTCAGTAAATTGCAGCACAATCAATAGAAAAATATGTTGGATTTCAAACTTCTACGGTCCCACACATTATTGAGATAGAAACCAAATTTGTCCTGAGTTGTCTCTTCTTTCAGACCTCTGTACAGGAGCCTGGTGTTTGGGAGCTGATTTCAACATCATTCGAAAAGTTCAAGAGAGATTTCCAGTAGGAAGATTAACAAAGGGAATGGGAAAAATTAATAAACTCATTAGAGTGGCAAAGCTGCTAGAAATTCTGTTTTCCAACGGTAAATTCATATGGTCAAGGAAAGGAAGGTCAGTTTCACGTTCTCTGCTGGATCAGTTTCAACATTAATTTATAATTTGTTTGCAAAGGTTCTCGCATAAAGATTAAAGAAAGCTCCATTACAATGTGGCTTTCTGGAAGAGCGCCAAATCTTGGATCCTATTTTAATAGCAAACAAAACTGTGGAGGACTGTAGAATACGAAAAAaGAAAaGATGGATCTTTAAATTAGACCTTGAAAAGGTCTTTAACTGAGTGGATATTTTtAGAAAATGTATTGCAAAaGAAGATCTTCGCCATAGGATATATTGTGTTATATTGGCCAGCCTTTACAGCATCCCCACTTTGAAGTCCTTGATGATCAGGACTTCCGGATCAGCCCTCTGCTTCAAACAGTTTTTtGCTCAATCAATCAAGGCTTATTCTTCTTTGTTCTCAGCCTGCTGCCTTTGTTTTTGTTTTTGCTTT

mRNA sequence

atgtgggatgaatctaagttgtcgattattgaagttctgaaacgagactattctctttcagtaaattgcagcacaatcaatagaaaaatatgttggatttcaaacttctacgacctctgtacaggagcctggtgtttgggagctgatttcaacatcattcgaaaagttcaagagagatttccagtaggaagattaacaaagggaatgggaaaaattaataaactcattagagtggcaaagctgctagaaattctgttttccaacggtaaattcatatggtcaaggaaaggaaggtcAGTTTCACGTTCTCTGCTGGATCAGTTTCAACATTAATTTATAATTTGTTTGCAAAGGTTCTCGCATAAAGATTAAAGAAagctccattacaatgtggctttctggaagagcgccaaatcttggatcctattttaatagcaaacaaaactgtggaggactgtagaatacgaaaaaagaaaagatggatctttaaattagaccttgaaaaggtctttaactgagtggatatttttagaaaatgtattgcaaaagaagatcttcgCCATAGGATATATTGTGTTATATTGGCCAGCCTTTACAGCATCCCCACTTTGAAGTCCTTGATGATCAGGACTTCCGGATCAGCcctctgcttcaaacagttttttgctcaatcaatcaaggcttattcttctttgttctcagcctgctgcctttgtttttgtttttgcttt

Coding sequence (CDS)

ATGTGGGATGAATCTAAGTTGTCGATTATTGAAGTTCTGAAACGAGACTATTCTCTTTCAGTAAATTGCAGCACAATCAATAGAAAAATATGTTGGATTTCAAACTTCTACGACCTCTGTACAGGAGCCTGGTGTTTGGGAGCTGATTTCAACATCATTCGAAAAGTTCAAGAGAGATTTCCAGTAGGAAGATTAACAAAGGGAATGGGAAAAATTAATAAACTCATTAGAGTGGCAAAGCTGCTAGAAATTCTGTTTTCCAACGGTAAATTCATATGGTCAAGGAAAGGAAGGTCAGTTTCACGTTCTCTGCTGGATCAGTTTCAACATTAA

Protein sequence

MWDESKLSIIEVLKRDYSLSVNCSTINRKICWISNFYDLCTGAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVSRSLLDQFQH*
Homology
[Close]
BLAST of Cucsa.017910 vs. TrEMBL
Match: A5B9F0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 40/127 (31.50%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVNC-----------------STINRKICW--ISNFYDLCT 60
           MWD  KL   EV+   +S+SV                   ST  RK  W  +S+ + L +
Sbjct: 852 MWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDFWEELSDIFGLSS 911

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WC+G DFN+IR+  E+   GRLT  M  ++  IR  +L++    +  F WS       
Sbjct: 912 PCWCVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDPPLRSASFTWSNMQEHPV 971

[Close]
BLAST of Cucsa.017910 vs. TrEMBL
Match: M5WJ76_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 34/127 (26.77%), Postives = 56/127 (44.09%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVN-----------------CSTINRKICW--ISNFYDLCT 60
           +W+   +S+I+ +  ++S+S+                  C    R   W  +++ Y  C 
Sbjct: 395 LWNSQSVSVIDSMVGEFSVSIRIEENIGTDWWLSGIYGPCRQRERNSFWEELADLYGYCG 454

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WCLG DFN++R   E+   GR+TK M   N  I+   L + +  N  F WS    +  
Sbjct: 455 DMWCLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDPILLNASFTWSNLRENAV 514

[Close]
BLAST of Cucsa.017910 vs. TrEMBL
Match: M5WPQ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 34/127 (26.77%), Postives = 56/127 (44.09%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVN-----------------CSTINRKICW--ISNFYDLCT 60
           +W+   +S+I+ +  ++S+S+                  C    R   W  +++ Y  C 
Sbjct: 341 LWNSQSVSVIDSMVGEFSVSIRIVENIGTDWWLSGIYGPCRQRERNSFWEELADLYGYCG 400

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WCLG DFN++R   E+   GR+TK M   N  I+   L + +  N  F WS    +  
Sbjct: 401 DKWCLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDPILLNASFTWSNLRENAV 460

[Close]
BLAST of Cucsa.017910 vs. TrEMBL
Match: A5BQD9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-07
Identity = 40/127 (31.50%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVNC-----------------STINRKICW--ISNFYDLCT 60
           MWD  KL   EV+   +S+SV                   ST  RK  W  +S+ + L +
Sbjct: 800 MWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDFWEELSDIFCLSS 859

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WC+G DFN+IR+  E+   GRLT  M  ++  IR  +L++    +  F WS       
Sbjct: 860 PCWCVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDPPLRSASFTWSNMQEHPV 919

[Close]
BLAST of Cucsa.017910 vs. TrEMBL
Match: A5BPI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.9e-07
Identity = 39/127 (30.71%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVNC-----------------STINRKICWI--SNFYDLCT 60
           +WD  KL   EV+   +S+SV                   ST  RK  W+  S+ + L +
Sbjct: 184 IWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWXSAVYGPNSTALRKDFWVELSDIFGLSS 243

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WC+G DFN+IR+  E+   GRLT  M  ++  IR  +L++    +  F WS       
Sbjct: 244 PCWCVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDPPLRSASFTWSNMQEHPV 303

[Close]
BLAST of Cucsa.017910 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 37/127 (29.13%), Postives = 54/127 (42.52%), Query Frame = 1 

Query: 1    MWDESKLSIIEVLKRDYSLSVNCSTINRKICWISN-------------------FYDLCT 60
            +W+   +S+ E L   +S+S+     N    W+S                     Y LC 
Sbjct: 1072 IWNTKNISVTESLIGVFSVSIKIKAFNGLEWWLSGVYGPCKSRERREFWEEMAGLYGLCG 1131

Query: 61   GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
              WC+G DFN++R V E+   GRLT  M   N  IR  +L ++   N +F WS       
Sbjct: 1132 PKWCVGGDFNVVRFVNEKSNGGRLTTSMRNFNDFIRETELKDLELLNAQFTWSNFREEPV 1191

[Close]
BLAST of Cucsa.017910 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 37/127 (29.13%), Postives = 54/127 (42.52%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVNCSTINRKICWISN-------------------FYDLCT 60
           +W+   +S+ E L   +S+S+     N    W+S                     Y LC 
Sbjct: 675 IWNTKNISVTESLIGVFSVSIKIKAFNGLEWWLSGVYGPCKSRERREFWEEMAGLYGLCG 734

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WC+G DFN++R V E+   GRLT  M   N  IR  +L ++   N +F WS       
Sbjct: 735 PKWCVGGDFNVVRFVNEKSNGGRLTTSMRNFNDFIRETELKDLELLNAQFTWSNFREEPV 794

[Close]
BLAST of Cucsa.017910 vs. NCBI nr
Match: gi|147838411|emb|CAN74319.1| (hypothetical protein VITISV_035345 [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 4.4e-07
Identity = 40/127 (31.50%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVNC-----------------STINRKICW--ISNFYDLCT 60
           MWD  KL   EV+   +S+SV                   ST  RK  W  +S+ + L +
Sbjct: 852 MWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDFWEELSDIFGLSS 911

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WC+G DFN+IR+  E+   GRLT  M  ++  IR  +L++    +  F WS       
Sbjct: 912 PCWCVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDPPLRSASFTWSNMQEHPV 971

[Close]
BLAST of Cucsa.017910 vs. NCBI nr
Match: gi|595882371|ref|XP_007212580.1| (hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica])

HSP 1 Score: 62.0 bits (149), Expect = 7.6e-07
Identity = 34/127 (26.77%), Postives = 56/127 (44.09%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVN-----------------CSTINRKICW--ISNFYDLCT 60
           +W+   +S+I+ +  ++S+S+                  C    R   W  +++ Y  C 
Sbjct: 395 LWNSQSVSVIDSMVGEFSVSIRIEENIGTDWWLSGIYGPCRQRERNSFWEELADLYGYCG 454

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WCLG DFN++R   E+   GR+TK M   N  I+   L + +  N  F WS    +  
Sbjct: 455 DMWCLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDPILLNASFTWSNLRENAV 514

[Close]
BLAST of Cucsa.017910 vs. NCBI nr
Match: gi|147857332|emb|CAN79190.1| (hypothetical protein VITISV_000232 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 7.6e-07
Identity = 40/127 (31.50%), Postives = 58/127 (45.67%), Query Frame = 1 

Query: 1   MWDESKLSIIEVLKRDYSLSVNC-----------------STINRKICW--ISNFYDLCT 60
           MWD  KL   EV+   +S+SV                   ST  RK  W  +S+ + L +
Sbjct: 800 MWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDFWEELSDIFCLSS 859

Query: 61  GAWCLGADFNIIRKVQERFPVGRLTKGMGKINKLIRVAKLLEILFSNGKFIWSRKGRSVS 109
             WC+G DFN+IR+  E+   GRLT  M  ++  IR  +L++    +  F WS       
Sbjct: 860 PCWCVGGDFNVIRRCSEKLGGGRLTPSMKDLDDFIRENELIDPPLRSASFTWSNMQEHPV 919

The following BLAST results are available for this feature:
BLAST of Cucsa.017910 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B9F0_VITVI3.1e-0731.50Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1[more]
M5WJ76_PRUPE5.3e-0726.77Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 S... [more]
M5WPQ5_PRUPE5.3e-0726.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1[more]
A5BQD9_VITVI5.3e-0731.50Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000232 PE=4 SV=1[more]
A5BPI6_VITVI6.9e-0730.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1[more]
BLAST of Cucsa.017910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657990185|ref|XP_008387315.1|2.6e-0729.13PREDICTED: uncharacterized protein LOC103449768 [Malus domestica][more]
gi|658030603|ref|XP_008350747.1|2.6e-0729.13PREDICTED: uncharacterized protein LOC103414113 [Malus domestica][more]
gi|147838411|emb|CAN74319.1|4.4e-0731.50hypothetical protein VITISV_035345 [Vitis vinifera][more]
gi|595882371|ref|XP_007212580.1|7.6e-0726.77hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica][more]
gi|147857332|emb|CAN79190.1|7.6e-0731.50hypothetical protein VITISV_000232 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.017910.1Cucsa.017910.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.017910Cucurbita maxima (Rimu)cgycmaB0738
Cucsa.017910Cucurbita maxima (Rimu)cgycmaB0740
Cucsa.017910Cucurbita moschata (Rifu)cgycmoB0728
Cucsa.017910Cucurbita moschata (Rifu)cgycmoB0730
Cucsa.017910Wild cucumber (PI 183967)cgycpiB400
Cucsa.017910Cucumber (Chinese Long) v2cgycuB380
Cucsa.017910Cucurbita pepo (Zucchini)cgycpeB0693
Cucsa.017910Cucurbita pepo (Zucchini)cgycpeB0694
Cucsa.017910Silver-seed gourdcarcgyB0547
Cucsa.017910Cucumber (Chinese Long) v3cgycucB405