Cucsa.017800 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.017800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	scaffold00252 : 55591 .. 58592 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATAGCATGTCCCTTTATGTTGTCTACTTCCCTTCCCTTCTATTTGTGGGGAGATGTTGTGCTTATTGCAGCCCATCTTATCAATCGGATGACCTCTCGTGTTTTCTACCTCCTGACCCCCTTAGAATGTCTCAAGGTGTCTTATCCCTCTGCCTGTCTCATTCCTGATGTTCCTTTCAAGTATTCGGGTGCATGGCCTACGTTTATAGTCATGGCCCTAACCAGTCTAAGTTCACCCCTTAGGCTTAGACCTGTGTGTTTCTTGGGTATCCTCTCCATCAACGGGCTACGAATGTTTCCATCCTCCTTCCCGTAAGTACTTTGTCTCCTTGGATGTCACCTACTTTGTCTCCTTGGATGTCACCTTTCTTGAAGATCCTCCTTTCTTTCTCGTTAGCTTTCTTCAGGAGGAGAGTGTGAGCGAAGAGTCTAACTGTGTAGTTCTCTTAGAGTCTACCCAGTCCTATTCCTGTTACCTCCTCATAACTCAGTCTAACCTACAAACCAAGTTCCCTAGATAACCTACTATAAGAGGAATCTCAGAGAGGAAGTTGGTTTCCCTATTACTCAGCTGGCTCCGATTCAAGATTTTGAACCATTGCAAGATAAAGGTATGACTAAGTCTATTGATTCATATGTTAGACAGTAAAATGAGTGAGAAAGACAGTTTGGTATAGCTGTTCGTGAAGATATTGGTAAGAAGGGTAGTGTTGATGAGATTGAAGTCATGGCAGCAATGATAGGTGATGAGGCTAAACAGGATCATTCAGGTAACTTTGATGGGCATGATCCGTCTCTTGACATACCTATTGCGTTGAGGAAAGGTTTCAGGTCTTGCACGAAGCACTCCATCTATAACTATGTATTTTACGAGAATTTATCACCCCAATTTAGAGCTTTTACAACCAGGCTTGACTCCACCATGATACCTCATAACATCCACATTGCCTTAGAGTGCTCTGAGTGGATAGCTGCAGTCATGGAGGAGATGAAAGCTCTTATAAAAAACAaGACTTGGGAGTTGTATGCTCTCCCCAAAGGGCATAAAACTGTAGGATGTAAATGAGTATTTAAATTCAATTACAAAACAAATGCAACTCTAGACAGACACAAGGGGAGGTTAGTTGCAAAAAGGTTTACTTAGACTTATGGAGTTGACTATTCTGAGACTTTTTCTCTAGTTGCAAAGTTAAGTTGTCTGTTGTTGTGAATAAAGATTGACTCTTATATCAACTAGACGTTAAGAATGCGTTCTTGAATGGAGACTTAGAAAAAAAaTTTATATGAACCCCcTCCAGGCTTTGAAGCCTAGTTTGACCATTCAGTTTGCAAGCTTGAAAAATTGTGTTTGAGAGGTTGGAACAGTCGCCAAGAGCATGGTTTGACATGTTTATCACCTTCATCAAGTCCTAAGGATATAGTCAAAGGCACTTTGACCACACTCTGTTTACGAAAGTTTTCAAGGTTCGGAAGATTGTTGTATTGATCGTCTACATTGATGACATTGTGCTATCTGGGGATGACATTTGTTTAAATCGTCCAGCTGAAAAAGAAGATGGGAGATGCACTTGAAATTAAAGACATGGGGAATCTTAAGTACTTCTTTGGGATGGAGATAGCTAGATTGAAAGAAGGTATCTTTGTATCTCAAATAAAGTACTCTCTTGATTTGTTGATTGAAACAGGTATGATGGGATGCCAACTTGCTGATACGTCTATCGAGTTCAATGCTAAACTTGGAAATTCAATTGATAAAGTTCTAGTTGATAAAAAAAaTATCAGCACTCGGTGGAGAAGTTGATCTACTTATCTCACACTAGACCAAATAATCTCCTATGTTGTTAGTGCAGTTAGTCAGTTCATGCAGGTTCCTTACGAGGAATACATGGAGGCAAAACAGAATTTTGAGGTATTTGAAAACTACTCTTGGTATAGGGTTGATGTTCAGGAAACTAACAGACGGTGTATTGAGATCTATATTGATTCAAACTGAGTAGGGTTTATTGTTAGCGAAAAATCTACCTCTGGGTATTGTACTTTCGTGTTGGCAATCTCGTATATTGGAGGAGTAAAAAGCAAGAGGTTGTGGCCAGAAGCAGTGTTGAAGCTATGTACAGGGCTATGAGTTTGGGAATATGTGAGGAGATTTGGCTACAAAAGGTGTTATCTGATATTTGTCAGGACTATGAGGTACCTATGAAATTATTTTGTTATAACAAGGCTGCTATTAGCATCGCTAATAACCTGGTTCAACATGACATAACCAAACATGTGGAGATTGATAGACACTTTATCAAAGGAAGACTGGACAATGGTAGCATATGCCTTGTCATACTCTTTTCCATCTAAGCTTCCTTTGCAATTGACCGTCTTTAATGCTTTCTTTGCAATTGATCGTCTTTAATGTTTTCTTTAAATAATGTTTATCAAGATTTTCCTTCTCTTTCACGTTTTATGAAACCCTTTTCTCTTGAAACATGAAGGGAGATGATAGTGATTTTGCCCATGAATTTTTtATTTtCATACGACTGACCAACTTGCTAATTTTGAGCAAGTGCCGCATGATCGTCCATCTTGCGTTTGAAATATTGCAATTGTGACAAGTGGTATCAGATCCTAATTGGCTTATTGACGGTTAAGACGCGAACATGACCACCGCGAAACATATGGACAATTCCTATGTAGATCAACTGGTAGAGCTTGAAGAGCAGATGGTCTACCTAGTGGAAGTTCCGATGGTCTACCTAGTGGAAGTTCCAATGGCAAACCAAGGTCCAACTGGAGGAGCGAATTAAGTCAGCAAAGTAAAGATCCTCAAATCCAAGCCTTTCTGTAGGGCAAGGGGATGCAAAAGCCTCGGAGAACTTCATCTTTAATCTCAAACAATACTTCAAGGCTACGAACACAGTCATAGAAGAAGACAAAGTGACATTGGCGACTATGCATCTAGCTGAGGTTGCAAATTTATGGTGGAGATCTCAATTTGTCGATATTTAG

mRNA sequence

atggaaatagcatgtccctttatgttgtctacttcccttcccttctatttgtggggagatgttgtgcttattgcagcccatcttatcaatcggatgacctctcgcttagacctgtgtgtttcttgggtatcctctccatcaacgggctacgaatgtttccatcctccttcccgtaagtactttgtctccttggatgtcacctactttgtctccttggatgtcacctttcttgaagatcctcctttctttctcgttagctttcttcaggaggagagtgtgagcgaagagtctaactgtaactttgatgggcatgatccgtctcttgacatacctattgcgttgaggaaaggtttcaggtcttgcacgaagcactccatctataactatgtattttacgagaatttatcaccccaatttagagcttttacaaccaggcttgactccaccatgatacctcataacatccacattgccttagagtgctctgagtggatagctgcagtcatggaggagatgaaagctcttataaaaaacaagacttgggagttgtatgctctccccaaagggcataaaactctgaaaaagaagatgggagatgcacttgaaattaaagacatggggaatcttaagtacttctttgggatggagatagctagattgaaagaaggtatctttgtatctcaaataaagtactctcttgatttgttgattgaaacaggtatgatgggatgccaacttgctgatacgtctatcgagttcaatgctaaacttggaaattcaattgataaacgaaaaatctacctctgggtattgtactttcgtgttggcaatctcgtatattggaggagtaaaaagcaagaggttgtggccagaagcagtgttgaagctatgtacagggctatgagtttgggaatatgtgaggagatttggctacaaaaggtgttatctgatatttgtcaggactatgaggtacctatgaaattattttgttataacaaggctgctattagcatcgctaataacctggttcaacatgacataaccaaacatgtggagattgatagacactttatcaaaggaagactggacaatgggcaaggggatgcaaaagcctcggagaacttcatctttaatctcaaacaatacttcaaggctacgaacacagtcatagaagaagacaaagtgacattggcgactatgcatctagctgaggttgcaaatttatggtggagatctcaatttgtcgatatttag

Coding sequence (CDS)

ATGGAAATAGCATGTCCCTTTATGTTGTCTACTTCCCTTCCCTTCTATTTGTGGGGAGATGTTGTGCTTATTGCAGCCCATCTTATCAATCGGATGACCTCTCGCTTAGACCTGTGTGTTTCTTGGGTATCCTCTCCATCAACGGGCTACGAATGTTTCCATCCTCCTTCCCGTAAGTACTTTGTCTCCTTGGATGTCACCTACTTTGTCTCCTTGGATGTCACCTTTCTTGAAGATCCTCCTTTCTTTCTCGTTAGCTTTCTTCAGGAGGAGAGTGTGAGCGAAGAGTCTAACTGTAACTTTGATGGGCATGATCCGTCTCTTGACATACCTATTGCGTTGAGGAAAGGTTTCAGGTCTTGCACGAAGCACTCCATCTATAACTATGTATTTTACGAGAATTTATCACCCCAATTTAGAGCTTTTACAACCAGGCTTGACTCCACCATGATACCTCATAACATCCACATTGCCTTAGAGTGCTCTGAGTGGATAGCTGCAGTCATGGAGGAGATGAAAGCTCTTATAAAAAACAaGACTTGGGAGTTGTATGCTCTCCCCAAAGGGCATAAAACTCTGAAAAAGAAGATGGGAGATGCACTTGAAATTAAAGACATGGGGAATCTTAAGTACTTCTTTGGGATGGAGATAGCTAGATTGAAAGAAGGTATCTTTGTATCTCAAATAAAGTACTCTCTTGATTTGTTGATTGAAACAGGTATGATGGGATGCCAACTTGCTGATACGTCTATCGAGTTCAATGCTAAACTTGGAAATTCAATTGATAAACGAAAAATCTACCTCTGGGTATTGTACTTTCGTGTTGGCAATCTCGTATATTGGAGGAGTAAAAAGCAAGAGGTTGTGGCCAGAAGCAGTGTTGAAGCTATGTACAGGGCTATGAGTTTGGGAATATGTGAGGAGATTTGGCTACAAAAGGTGTTATCTGATATTTGTCAGGACTATGAGGTACCTATGAAATTATTTTGTTATAACAAGGCTGCTATTAGCATCGCTAATAACCTGGTTCAACATGACATAACCAAACATGTGGAGATTGATAGACACTTTATCAAAGGAAGACTGGACAATGGGCAAGGGGATGCAAAAGCCTCGGAGAACTTCATCTTTAATCTCAAACAATACTTCAAGGCTACGAACACAGTCATAGAAGAAGACAAAGTGACATTGGCGACTATGCATCTAGCTGAGGTTGCAAATTTATGGTGGAGATCTCAATTTGTCGATATTTAG

Protein sequence

MEIACPFMLSTSLPFYLWGDVVLIAAHLINRMTSRLDLCVSWVSSPSTGYECFHPPSRKYFVSLDVTYFVSLDVTFLEDPPFFLVSFLQEESVSEESNCNFDGHDPSLDIPIALRKGFRSCTKHSIYNYVFYENLSPQFRAFTTRLDSTMIPHNIHIALECSEWIAAVMEEMKALIKNKTWELYALPKGHKTLKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIEFNAKLGNSIDKRKIYLWVLYFRVGNLVYWRSKKQEVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHDITKHVEIDRHFIKGRLDNGQGDAKASENFIFNLKQYFKATNTVIEEDKVTLATMHLAEVANLWWRSQFVDI*

Homology

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BLAST of Cucsa.017800 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-11
Identity = 44/148 (29.73%), Postives = 77/148 (52.03%), Query Frame = 1


Query: 217  IARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIEFNAKLGNSIDKRKIYLWVLYFRVG 276
            + R  +G    ++ +  +L  E  ++G   +D +       G+ ID++    ++      
Sbjct: 1224 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWA-------GSEIDRKSTTGYLFKMFDF 1283

Query: 277  NLVYWRSKKQEVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAI 336
            NL+ W +K+Q  VA SS EA Y A+   + E +WL+ +L+ I    E P+K++  N+  I
Sbjct: 1284 NLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCI 1343

Query: 337  SIANNLVQHDITKHVEIDRHFIKGRLDN 365
            SIANN   H   KH++I  HF + ++ N
Sbjct: 1344 SIANNPSCHKRAKHIDIKYHFAREQVQN 1364

HSP 2 Score: 33.5 bits (75), Expect = 6.8e+00
Identity = 21/57 (36.84%), Postives = 29/57 (50.88%), Query Frame = 1


Query: 18  WGDVVLIAAHLINRMTSRLDLCVSWVSSPSTGYECFH--PPSRKYFVSLDVTYFVSL 73
           WG+ VL A +LINR+ SR     + V S  T YE +H   P  K+      T +V +
Sbjct: 610 WGEAVLTATYLINRIPSR-----ALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHI 661

[Close]

BLAST of Cucsa.017800 vs. TrEMBL
Match: A5C243_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019561 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.9e-42
Identity = 104/199 (52.26%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 193 LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
           LKK +    EIKD+GNLKYF GMEIAR K+GI VSQ KY LDLL ETGM+GC+ A+T ++
Sbjct: 452 LKKLLTKEFEIKDLGNLKYFLGMEIARSKKGIAVSQRKYVLDLLNETGMLGCKPAETPMD 511

Query: 253 FNAKLGNS-----IDKRK--------IYLW-------------VLYFRVGNLVYWRSKKQ 312
              KL  S     +DK +        IYL              +++   GNLV WRSKKQ
Sbjct: 512 TTVKLEESDGSAPVDKGRYQRLVGKLIYLSHTRPDIGFSVSVAIVHLFWGNLVTWRSKKQ 571

Query: 313 EVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHD 366
            VVARSS EA +RAM+ GICE IWL ++L ++    + PM L+C N+AAISIA N V HD
Sbjct: 572 SVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHD 631

[Close]

BLAST of Cucsa.017800 vs. TrEMBL
Match: A5C243_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019561 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 108 LDIPIALRKGFRSCTKHSIYNYVFYENLSPQFRAFTTRLDSTMIPHNIHIALECSEWIAA 167
           L++PIA RKG RSCT+H I N++ Y+ LSP FRAFT+ +    +P NI  A +  +W AA
Sbjct: 279 LNMPIAWRKGVRSCTQHPIGNFISYDKLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAA 338

Query: 168 VMEEMKALIKNKTWELYALPKGHKTLKKKMGDALEIKDMGNL 210
           V EE++AL KN TWE+  LP+G K +  K    ++ K  GN+
Sbjct: 339 VDEEVRALEKNGTWEITDLPRGKKPVGCKWIFTVKYKADGNV 380

HSP 2 Score: 39.3 bits (90), Expect = 1.4e+01
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 1


Query: 1  MEIACPFMLSTSLPFYLWGDVVLIAAHLINRMTSRL 37
          +E+A   M S ++P   WG  VL AA+LINRM SR+
Sbjct: 59 LEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRV 94

HSP 3 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 102/199 (51.26%), Postives = 128/199 (64.32%), Query Frame = 1


Query: 193  LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
            LKK +    EIKD+GNLKYF GMEIAR K+GI VSQ KY LDLL ETGM+GC+ A+T + 
Sbjct: 1137 LKKLLTKEFEIKDLGNLKYFLGMEIARSKKGIAVSQCKYVLDLLNETGMLGCKPAETPMN 1196

Query: 253  FNAKLGNS-----IDKRK--------IYLW-------------VLYFRVGNLVYWRSKKQ 312
               KL  S     +D+ +        IYL              +++   GNLV WRSKKQ
Sbjct: 1197 TTVKLEESDGSAPVDEGRYQRLVGKLIYLSHTRLDIGFSVSVAIVHLSGGNLVTWRSKKQ 1256

Query: 313  EVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHD 366
             VVARSS EA +RAM+ GICE IWL ++L ++    + PM L+C N+AAISIA N V HD
Sbjct: 1257 SVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHD 1316

[Close]

BLAST of Cucsa.017800 vs. TrEMBL
Match: A5AZT5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011639 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.6e-17
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 1


Query: 88  LQEESVSEESNCNFDGHDPS--------------------LDIPIALRKGFRSCTKHSIY 147
           ++EE++S++++    G +PS                    L++PIA RKG RSCT+H I 
Sbjct: 842 MEEEALSQQTHEAEPGPNPSKLPGNNAPDGTVDSELENDILNMPIAWRKGVRSCTQHPIG 901

Query: 148 NYVFYENLSPQFRAFTTRLDSTMIPHNIHIALECSEWIAAVMEEMKALIKNKTWELYALP 207
           N++ Y+ LSP FRAFT+ +    +P NI  A +  +W A V EE++AL KN TWE+  LP
Sbjct: 902 NFISYDKLSPTFRAFTSSITEIPVPRNIQEAFKYPKWKAVVDEEVRALEKNGTWEITDLP 961

Query: 208 KGHKTLKKKMGDALEIKDMGNLKYFFGMEIAR 220
           +G K ++ K    ++ K  GN+  +    +A+
Sbjct: 962 RGKKPIRCKWIFTIKYKADGNVDRYKARLVAK 993

HSP 2 Score: 39.3 bits (90), Expect = 1.4e+01
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 1


Query: 1   MEIACPFMLSTSLPFYLWGDVVLIAAHLINRMTSRL 37
           +E+A   M S ++P   WG  VL AA+LINRM SR+
Sbjct: 662 LEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRV 697

HSP 3 Score: 175.3 bits (443), Expect = 1.6e-40
Identity = 100/202 (49.50%), Postives = 131/202 (64.85%), Query Frame = 1


Query: 191 KTLKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTS 250
           +++K  +    EIKD+ NLKYF GMEIAR ++GI VSQ KY LDLL +TGM+GC+ ADT 
Sbjct: 740 RSIKSFLAAEFEIKDLENLKYFLGMEIARSRKGISVSQRKYVLDLLKKTGMLGCKPADTP 799

Query: 251 IEFNAKLGNS-----IDKRK--------IYL--------------WVLYFRVGNLVYWRS 310
           ++   KLG       +DK +        IYL              +  Y R GNLV W+S
Sbjct: 800 MDPTTKLGAKENCAPVDKGRYQRLVGKLIYLSHTRPDIWFFCQHGYCTYVR-GNLVTWKS 859

Query: 311 KKQEVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLV 366
           KKQ VV+RS+ EA +RAM+ GICE IWL++VL ++    + PMK+FC N++AISIA N V
Sbjct: 860 KKQSVVSRSNAEAEFRAMAHGICEGIWLRRVLKELKISDDEPMKMFCDNQSAISIAKNPV 919

[Close]

BLAST of Cucsa.017800 vs. TrEMBL
Match: A5C979_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027911 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 75/245 (30.61%), Postives = 121/245 (49.39%), Query Frame = 1


Query: 9   LSTSLPFYLWGDVVLIAAHLINR--MTSRLDLCVSWVSSPST-GYECFHPPSRKYFVSLD 68
           L +++PF ++G    +  H  +R  +  R   C+    SP+  GY+C+ P  +++  S+D
Sbjct: 411 LISTIPFKVFGCSAFVHVHQQHRDKLDPRALKCIFLGYSPTQKGYKCYSPVIKQFDHSMD 470

Query: 69  VTYF----------VSLDVTFLEDPPFFLVSFLQE-----------ESVSEESNCNFDGH 128
           VT+F          +  +  F+++   + +   ++           E   E    +    
Sbjct: 471 VTFFEQQPYFSKSDIQGETIFIQEYQLWDIEESRKNQKEMEQQASLEQTQESDPSSRSSE 530

Query: 129 DPS----------LDIPIALRKGFRSCTKHSIYNYVFYENLSPQFRAFTTRLDSTMIPHN 188
           DPS           D PIA+RKG RSCTKH IY +V YE LSP+F+ F   LD+  +P+N
Sbjct: 531 DPSGNYNPETNDDSDFPIAMRKGVRSCTKHPIYTFVSYEGLSPKFKTFVANLDNIQVPNN 590

Query: 189 IHIALECSEWIAAVMEEMKALIKNKTWELYALPKGHKTLKKKMGDALEIKDMGNLKYFFG 220
           I  AL   EW +AV EE+ AL KN TWE+  LP G + +  K    ++  + G++  F  
Sbjct: 591 IQEALGSPEWKSAVYEEIHALEKNGTWEISELPVGKRLVGCKWIFTVKYNEDGSVNRFNA 650

HSP 2 Score: 31.6 bits (70), Expect = 2.9e+03
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1


Query: 9   LSTSLPFYLWGDVVLIAAHLINRMTSRL 37
           L +S P  L G+ +LIA +LINRM SR+
Sbjct: 365 LVSSSPISLSGEAILIATYLINRMPSRI 392

HSP 3 Score: 170.2 bits (430), Expect = 5.2e-39
Identity = 99/224 (44.20%), Postives = 126/224 (56.25%), Query Frame = 1


Query: 193 LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
           LK K+ +  EIKD+G LKYF GME AR KEGIFV+Q KY LDLL ETGM+GC+LA+T IE
Sbjct: 34  LKGKLAEEFEIKDLGALKYFLGMEFARSKEGIFVNQWKYVLDLLDETGMLGCKLAETPIE 93

Query: 253 FNAKL----GNSIDKRKIYLWVLYFRVGNLVY---------------------------- 312
            N KL      ++  R  Y  +    VG L+Y                            
Sbjct: 94  LNVKLQPKKAKNVKDRDRYQRL----VGRLIYLSHTCLDIAFSVSMVSQFMHAPGPEHFE 153

Query: 313 -------------------WRSKKQEVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQD 366
                              WRSKKQ VVARSS E  +RA++ GICE +W++++L ++   
Sbjct: 154 AVYRILRYLKGTPGGNLVTWRSKKQNVVARSSAEVEFRAVTHGICEIMWIRRLLEELKMT 213

[Close]

BLAST of Cucsa.017800 vs. TrEMBL
Match: A5AV26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022222 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.7e-37
Identity = 94/174 (54.02%), Postives = 116/174 (66.67%), Query Frame = 1


Query: 193 LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
           LK+      EIKD+G+LKYF  +EIAR K GI VSQ KY LDLL E GM   + + T +E
Sbjct: 4   LKRNFATKFEIKDLGSLKYFLYIEIARSKRGIMVSQRKYILDLLKEIGMSDSKPSKTPME 63

Query: 253 FNAKLGNSIDKRKIYLWVLYFR-VGNLVYWRSKKQEVVARSSVEAMYRAMSLGICEEIWL 312
            N +LG+S DK        Y R V NLV WRSKKQ V+ARSS +A ++AM  GICE++WL
Sbjct: 64  PNLRLGDS-DKNVPVDTARYQRLVDNLVTWRSKKQSVMARSSTKAEFQAMPHGICEKLWL 123

Query: 313 QKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHDITKHVEIDRHFIKGRLDNG 366
           + VL ++ Q  E  MKL+C NKA  SIA+N +QHD  KHVEIDRHFIK +   G
Sbjct: 124 KHVLEELRQPSEEAMKLYCDNKAEFSIAHNPIQHDRAKHVEIDRHFIKEKPKTG 176

[Close]

BLAST of Cucsa.017800 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 80.1 bits (196), Expect = 3.6e-15
Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 1


Query: 216 EIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIEF--NAKLGNSIDKRKIYLWVLYF 275
           E  RL     V +I + +   +  G+     A+  ++   +A   +  D R+       F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466

Query: 276 RVGNLVYWRSKKQEVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNK 335
              +L+ W+SKKQ+VV++SS EA YRA+S    E +WL +   ++      P  LFC N 
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526

Query: 336 AAISIANNLVQHDITKHVEIDRHFIKGR 362
           AAI IA N V H+ TKH+E D H ++ R
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRER 554

HSP 2 Score: 67.4 bits (163), Expect = 2.4e-11
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 193 LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLA----D 252
           LK ++    +++D+G LKYF G+EIAR   GI + Q KY+LDLL ETG++GC+ +    D
Sbjct: 300 LKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMD 359

Query: 253 TSIEFNAKLGNSIDKRKIYLWVLYFRVGNLVYWRSKKQEV 289
            S+ F+A  G      K Y  +    +G L+Y +  + ++
Sbjct: 360 PSVTFSAHSGGDFVDAKAYRRL----IGRLMYLQITRLDI 395

[Close]

BLAST of Cucsa.017800 vs. NCBI nr
Match: gi|147782985|emb|CAN62019.1| (hypothetical protein VITISV_019561 [Vitis vinifera])

HSP 1 Score: 181.0 bits (458), Expect = 4.2e-42
Identity = 104/199 (52.26%), Postives = 129/199 (64.82%), Query Frame = 1


Query: 193 LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
           LKK +    EIKD+GNLKYF GMEIAR K+GI VSQ KY LDLL ETGM+GC+ A+T ++
Sbjct: 452 LKKLLTKEFEIKDLGNLKYFLGMEIARSKKGIAVSQRKYVLDLLNETGMLGCKPAETPMD 511

Query: 253 FNAKLGNS-----IDKRK--------IYLW-------------VLYFRVGNLVYWRSKKQ 312
              KL  S     +DK +        IYL              +++   GNLV WRSKKQ
Sbjct: 512 TTVKLEESDGSAPVDKGRYQRLVGKLIYLSHTRPDIGFSVSVAIVHLFWGNLVTWRSKKQ 571

Query: 313 EVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHD 366
            VVARSS EA +RAM+ GICE IWL ++L ++    + PM L+C N+AAISIA N V HD
Sbjct: 572 SVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHD 631

[Close]

BLAST of Cucsa.017800 vs. NCBI nr
Match: gi|147782985|emb|CAN62019.1| (hypothetical protein VITISV_019561 [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-16
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 108 LDIPIALRKGFRSCTKHSIYNYVFYENLSPQFRAFTTRLDSTMIPHNIHIALECSEWIAA 167
           L++PIA RKG RSCT+H I N++ Y+ LSP FRAFT+ +    +P NI  A +  +W AA
Sbjct: 279 LNMPIAWRKGVRSCTQHPIGNFISYDKLSPTFRAFTSSITEIQVPQNIQEAFKYPKWKAA 338

Query: 168 VMEEMKALIKNKTWELYALPKGHKTLKKKMGDALEIKDMGNL 210
           V EE++AL KN TWE+  LP+G K +  K    ++ K  GN+
Sbjct: 339 VDEEVRALEKNGTWEITDLPRGKKPVGCKWIFTVKYKADGNV 380

HSP 2 Score: 39.3 bits (90), Expect = 2.0e+01
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 1


Query: 1  MEIACPFMLSTSLPFYLWGDVVLIAAHLINRMTSRL 37
          +E+A   M S ++P   WG  VL AA+LINRM SR+
Sbjct: 59 LEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRV 94

HSP 3 Score: 179.1 bits (453), Expect = 1.6e-41
Identity = 102/199 (51.26%), Postives = 128/199 (64.32%), Query Frame = 1


Query: 193  LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
            LKK +    EIKD+GNLKYF GMEIAR K+GI VSQ KY LDLL ETGM+GC+ A+T + 
Sbjct: 1137 LKKLLTKEFEIKDLGNLKYFLGMEIARSKKGIAVSQCKYVLDLLNETGMLGCKPAETPMN 1196

Query: 253  FNAKLGNS-----IDKRK--------IYLW-------------VLYFRVGNLVYWRSKKQ 312
               KL  S     +D+ +        IYL              +++   GNLV WRSKKQ
Sbjct: 1197 TTVKLEESDGSAPVDEGRYQRLVGKLIYLSHTRLDIGFSVSVAIVHLSGGNLVTWRSKKQ 1256

Query: 313  EVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHD 366
             VVARSS EA +RAM+ GICE IWL ++L ++    + PM L+C N+AAISIA N V HD
Sbjct: 1257 SVVARSSAEAEFRAMAQGICEGIWLNRLLEELRVPLKHPMVLYCDNQAAISIAKNPVHHD 1316

[Close]

BLAST of Cucsa.017800 vs. NCBI nr
Match: gi|147771338|emb|CAN65095.1| (hypothetical protein VITISV_011639 [Vitis vinifera])

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-17
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 1


Query: 88  LQEESVSEESNCNFDGHDPS--------------------LDIPIALRKGFRSCTKHSIY 147
           ++EE++S++++    G +PS                    L++PIA RKG RSCT+H I 
Sbjct: 842 MEEEALSQQTHEAEPGPNPSKLPGNNAPDGTVDSELENDILNMPIAWRKGVRSCTQHPIG 901

Query: 148 NYVFYENLSPQFRAFTTRLDSTMIPHNIHIALECSEWIAAVMEEMKALIKNKTWELYALP 207
           N++ Y+ LSP FRAFT+ +    +P NI  A +  +W A V EE++AL KN TWE+  LP
Sbjct: 902 NFISYDKLSPTFRAFTSSITEIPVPRNIQEAFKYPKWKAVVDEEVRALEKNGTWEITDLP 961

Query: 208 KGHKTLKKKMGDALEIKDMGNLKYFFGMEIAR 220
           +G K ++ K    ++ K  GN+  +    +A+
Sbjct: 962 RGKKPIRCKWIFTIKYKADGNVDRYKARLVAK 993

HSP 2 Score: 39.3 bits (90), Expect = 2.0e+01
Identity = 18/36 (50.00%), Postives = 24/36 (66.67%), Query Frame = 1


Query: 1   MEIACPFMLSTSLPFYLWGDVVLIAAHLINRMTSRL 37
           +E+A   M S ++P   WG  VL AA+LINRM SR+
Sbjct: 662 LEVARSLMFSMNVPKLFWGQAVLTAAYLINRMPSRV 697

HSP 3 Score: 175.3 bits (443), Expect = 2.3e-40
Identity = 100/202 (49.50%), Postives = 131/202 (64.85%), Query Frame = 1


Query: 191 KTLKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTS 250
           +++K  +    EIKD+ NLKYF GMEIAR ++GI VSQ KY LDLL +TGM+GC+ ADT 
Sbjct: 740 RSIKSFLAAEFEIKDLENLKYFLGMEIARSRKGISVSQRKYVLDLLKKTGMLGCKPADTP 799

Query: 251 IEFNAKLGNS-----IDKRK--------IYL--------------WVLYFRVGNLVYWRS 310
           ++   KLG       +DK +        IYL              +  Y R GNLV W+S
Sbjct: 800 MDPTTKLGAKENCAPVDKGRYQRLVGKLIYLSHTRPDIWFFCQHGYCTYVR-GNLVTWKS 859

Query: 311 KKQEVVARSSVEAMYRAMSLGICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLV 366
           KKQ VV+RS+ EA +RAM+ GICE IWL++VL ++    + PMK+FC N++AISIA N V
Sbjct: 860 KKQSVVSRSNAEAEFRAMAHGICEGIWLRRVLKELKISDDEPMKMFCDNQSAISIAKNPV 919

[Close]

BLAST of Cucsa.017800 vs. NCBI nr
Match: gi|147841808|emb|CAN75434.1| (hypothetical protein VITISV_027911 [Vitis vinifera])

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 75/245 (30.61%), Postives = 121/245 (49.39%), Query Frame = 1


Query: 9   LSTSLPFYLWGDVVLIAAHLINR--MTSRLDLCVSWVSSPST-GYECFHPPSRKYFVSLD 68
           L +++PF ++G    +  H  +R  +  R   C+    SP+  GY+C+ P  +++  S+D
Sbjct: 411 LISTIPFKVFGCSAFVHVHQQHRDKLDPRALKCIFLGYSPTQKGYKCYSPVIKQFDHSMD 470

Query: 69  VTYF----------VSLDVTFLEDPPFFLVSFLQE-----------ESVSEESNCNFDGH 128
           VT+F          +  +  F+++   + +   ++           E   E    +    
Sbjct: 471 VTFFEQQPYFSKSDIQGETIFIQEYQLWDIEESRKNQKEMEQQASLEQTQESDPSSRSSE 530

Query: 129 DPS----------LDIPIALRKGFRSCTKHSIYNYVFYENLSPQFRAFTTRLDSTMIPHN 188
           DPS           D PIA+RKG RSCTKH IY +V YE LSP+F+ F   LD+  +P+N
Sbjct: 531 DPSGNYNPETNDDSDFPIAMRKGVRSCTKHPIYTFVSYEGLSPKFKTFVANLDNIQVPNN 590

Query: 189 IHIALECSEWIAAVMEEMKALIKNKTWELYALPKGHKTLKKKMGDALEIKDMGNLKYFFG 220
           I  AL   EW +AV EE+ AL KN TWE+  LP G + +  K    ++  + G++  F  
Sbjct: 591 IQEALGSPEWKSAVYEEIHALEKNGTWEISELPVGKRLVGCKWIFTVKYNEDGSVNRFNA 650

HSP 2 Score: 31.6 bits (70), Expect = 4.1e+03
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1


Query: 9   LSTSLPFYLWGDVVLIAAHLINRMTSRL 37
           L +S P  L G+ +LIA +LINRM SR+
Sbjct: 365 LVSSSPISLSGEAILIATYLINRMPSRI 392

HSP 3 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 87/180 (48.33%), Postives = 119/180 (66.11%), Query Frame = 1


Query: 193 LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
           LK+ +    E+KD+G L+YF G+E+ R  +GI + Q KY LDLL +TGM+GC+  DT IE
Sbjct: 14  LKENLASEFELKDLGELRYFLGIEVIRSSDGISLLQRKYVLDLLEDTGMLGCKPCDTPIE 73

Query: 253 FNAKLG---NSID------KRKIYLWVLYFRVGNLVYWRSKKQEVVARSSVEAMYRAMSL 312
            N ++G   N I       +R+       F  G+LV W+SKKQ+VVARSS EA +  M+ 
Sbjct: 74  MNYRVGIFPNQIVADIGKYQRRSTSGYFTFVSGDLVTWKSKKQKVVARSSAEAEFGGMAH 133

Query: 313 GICEEIWLQKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHDITKHVEIDRHFIKGRLD 364
           G+ E +W+  VL+++   +E P+KLFC NKAAI I  N VQHD TKH+E+DRHFIK +LD
Sbjct: 134 GVSELLWIMHVLNELGMVFEKPVKLFCDNKAAIEITQNPVQHDRTKHIEVDRHFIKEKLD 193

[Close]

BLAST of Cucsa.017800 vs. NCBI nr
Match: gi|147772256|emb|CAN60636.1| (hypothetical protein VITISV_022222 [Vitis vinifera])

HSP 1 Score: 165.2 bits (417), Expect = 2.4e-37
Identity = 94/174 (54.02%), Postives = 116/174 (66.67%), Query Frame = 1


Query: 193 LKKKMGDALEIKDMGNLKYFFGMEIARLKEGIFVSQIKYSLDLLIETGMMGCQLADTSIE 252
           LK+      EIKD+G+LKYF  +EIAR K GI VSQ KY LDLL E GM   + + T +E
Sbjct: 4   LKRNFATKFEIKDLGSLKYFLYIEIARSKRGIMVSQRKYILDLLKEIGMSDSKPSKTPME 63

Query: 253 FNAKLGNSIDKRKIYLWVLYFR-VGNLVYWRSKKQEVVARSSVEAMYRAMSLGICEEIWL 312
            N +LG+S DK        Y R V NLV WRSKKQ V+ARSS +A ++AM  GICE++WL
Sbjct: 64  PNLRLGDS-DKNVPVDTARYQRLVDNLVTWRSKKQSVMARSSTKAEFQAMPHGICEKLWL 123

Query: 313 QKVLSDICQDYEVPMKLFCYNKAAISIANNLVQHDITKHVEIDRHFIKGRLDNG 366
           + VL ++ Q  E  MKL+C NKA  SIA+N +QHD  KHVEIDRHFIK +   G
Sbjct: 124 KHVLEELRQPSEEAMKLYCDNKAEFSIAHNPIQHDRAKHVEIDRHFIKEKPKTG 176

The following BLAST results are available for this feature:

BLAST of Cucsa.017800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COPIA_DROME	1.7e-11	29.73	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of Cucsa.017800 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C243_VITVI	2.9e-42	52.26	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019561 PE=4 SV=1	[more]
A5C243_VITVI	1.2e-16	47.06	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019561 PE=4 SV=1	[more]
A5AZT5_VITVI	5.6e-17	35.53	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011639 PE=4 SV=1	[more]
A5C979_VITVI	2.6e-22	30.61	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027911 PE=4 SV=1	[more]
A5AV26_VITVI	1.7e-37	54.02	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022222 PE=4 SV=1	[more]

BLAST of Cucsa.017800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	3.6e-15	33.78	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

BLAST of Cucsa.017800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147782985\|emb\|CAN62019.1\|	4.2e-42	52.26	hypothetical protein VITISV_019561 [Vitis vinifera]	[more]
gi\|147782985\|emb\|CAN62019.1\|	1.8e-16	47.06	hypothetical protein VITISV_019561 [Vitis vinifera]	[more]
gi\|147771338\|emb\|CAN65095.1\|	8.0e-17	35.53	hypothetical protein VITISV_011639 [Vitis vinifera]	[more]
gi\|147841808\|emb\|CAN75434.1\|	3.7e-22	30.61	hypothetical protein VITISV_027911 [Vitis vinifera]	[more]
gi\|147772256\|emb\|CAN60636.1\|	2.4e-37	54.02	hypothetical protein VITISV_022222 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.017800.1	Cucsa.017800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 191..252 score: 1.
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..324 score: 1.2
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 1..324 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.017800	Cucurbita maxima (Rimu)	cgycmaB0738
Cucsa.017800	Cucurbita moschata (Rifu)	cgycmoB0728
Cucsa.017800	Wild cucumber (PI 183967)	cgycpiB400
Cucsa.017800	Cucumber (Chinese Long) v2	cgycuB380
Cucsa.017800	Cucurbita pepo (Zucchini)	cgycpeB0693
Cucsa.017800	Cucumber (Chinese Long) v3	cgycucB405