Cucsa.017790 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.017790
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionS-formylglutathione hydrolase
Locationscaffold00252 : 44830 .. 45378 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGCCTGAATGTTGAAGGAGAGTCAGACAGTTGGGATTTTGGTGTCGGTATGTTACTTCTGACTGTCATATTGTAGTTAAACAAAATAACTTTGATATTATTTTGTTGCTCTTCAAATTGAACCAATGTACATTGAAGACCTAGCCCTTACTATTACTAAATTTTTCTCGTTTATGGAGTTAATTGTATTGTGTATGTATAGTCATATTCTGAATCCTACCTTCGATGTATTTTACATCTTGTTCTATATGGCAGTTTAGTTTCTCAAAATAAAATGCATTCTTGTTCCCACGTACAAAATTATGAATTTAGTTTAATTTTTGCCTTCTCTTTTTCTTGTTTCTTAAATAGGTGCTGGATTTTATCTCAATGCTACACAAGAGAAATGGAAACATTGGCGTATGTATGATTATGTTGTCAAGGAACTACCTAAACTTCTGAGTGAGAACTTTCCACAACTTGATACATTGCGGGCATCTATATTTGGTCACTCCATGGGTGGGCATGGTGCTCTAACGATCTACCTGAAAAACTTGGACAAATATAAG

mRNA sequence

GAGGCCTGAATGTTGAAGGAGAGTCAGACAGTTGGGATTTTGGTGTCGGTGCTGGATTTTATCTCAATGCTACACAAGAGAAATGGAAACATTGGCGTATGTATGATTATGTTGTCAAGGAACTACCTAAACTTCTGAGTGAGAACTTTCCACAACTTGATACATTGCGGGCATCTATATTTGGTCACTCCATGGGTGGGCATGGTGCTCTAACGATCTACCTGAAAAACTTGGACAAATATAAG

Coding sequence (CDS)

GAGGCCTGAATGTTGAAGGAGAGTCAGACAGTTGGGATTTTGGTGTCGGTGCTGGATTTTATCTCAATGCTACACAAGAGAAATGGAAACATTGGCGTATGTATGATTATGTTGTCAAGGAACTACCTAAACTTCTGAGTGAGAACTTTCCACAACTTGATACATTGCGGGCATCTATATTTGGTCACTCCATGGGTGGGCATGGTGCTCTAACGATCTACCTGAAAAACTTGGACAAATATAAG

Protein sequence

GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIFGHSMGGHGALTIYLKNLDKYK
Homology
[Close]
BLAST of Cucsa.017790 vs. Swiss-Prot
Match: SFGH_ARATH (S-formylglutathione hydrolase OS=Arabidopsis thaliana GN=SFGH PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 6.0e-38
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DS+DFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENF QLDT +ASI 
Sbjct: 90  GLNVEGEADSYDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFSQLDTTKASIS 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYL+NLDKYK
Sbjct: 150 GHSMGGHGALTIYLRNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. Swiss-Prot
Match: ESTD_BOVIN (S-formylglutathione hydrolase OS=Bos taurus GN=ESD PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-24
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWK-HWRMYDYVVKELPKLLSENFPQLDTLRASI 60
           G N++GE DSWDFG GAGFY++AT++ WK ++RMY YV KELP+L+++NFP +D  R S+
Sbjct: 87  GCNIKGEEDSWDFGTGAGFYVDATEDLWKTNYRMYSYVTKELPQLVNDNFP-VDPQRMSV 146

Query: 61  FGHSMGGHGALTIYLKNLDKYK 82
           FGHSMGGHGAL   LKN  KYK
Sbjct: 147 FGHSMGGHGALICALKNPGKYK 167

[Close]
BLAST of Cucsa.017790 vs. Swiss-Prot
Match: ESTD_MOUSE (S-formylglutathione hydrolase OS=Mus musculus GN=Esd PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-24
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWK-HWRMYDYVVKELPKLLSENFPQLDTLRASI 60
           G N++GE DSWDFG GAGFY+NAT++ WK ++RMY YV +ELP+L++ NFP +D  R SI
Sbjct: 87  GCNIKGEDDSWDFGTGAGFYVNATEDPWKANYRMYSYVTEELPQLINANFP-VDPQRMSI 146

Query: 61  FGHSMGGHGALTIYLKNLDKYK 82
           FGHSMGGHGAL   LKN  KY+
Sbjct: 147 FGHSMGGHGALICALKNPGKYR 167

[Close]
BLAST of Cucsa.017790 vs. Swiss-Prot
Match: ESTD_PIG (S-formylglutathione hydrolase OS=Sus scrofa GN=ESD PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 6.5e-24
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWK-HWRMYDYVVKELPKLLSENFPQLDTLRASI 60
           G N++GE +SWDFG GAGFYL+AT++ WK ++RMY YV +ELP+L++ NFP +D  R SI
Sbjct: 87  GCNIKGEDESWDFGTGAGFYLDATEDPWKTNYRMYSYVTEELPQLINANFP-VDPQRMSI 146

Query: 61  FGHSMGGHGALTIYLKNLDKYK 82
           FGHSMGGHGAL   LKN  KYK
Sbjct: 147 FGHSMGGHGALICTLKNPGKYK 167

[Close]
BLAST of Cucsa.017790 vs. Swiss-Prot
Match: ESTD_HUMAN (S-formylglutathione hydrolase OS=Homo sapiens GN=ESD PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-23
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWK-HWRMYDYVVKELPKLLSENFPQLDTLRASI 60
           G N++GE +SWDFG GAGFY++AT++ WK ++RMY YV +ELP+L++ NFP +D  R SI
Sbjct: 87  GCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFP-VDPQRMSI 146

Query: 61  FGHSMGGHGALTIYLKNLDKYK 82
           FGHSMGGHGAL   LKN  KYK
Sbjct: 147 FGHSMGGHGALICALKNPGKYK 167

[Close]
BLAST of Cucsa.017790 vs. TrEMBL
Match: A0A0A0L300_CUCSA (S-formylglutathione hydrolase OS=Cucumis sativus GN=Csa_4G337870 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF
Sbjct: 90  GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 150 GHSMGGHGALTIYLKNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. TrEMBL
Match: V4SBR1_9ROSI (S-formylglutathione hydrolase OS=Citrus clementina GN=CICLE_v10005572mg PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.5e-39
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DSWDFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENFPQL+T RASIF
Sbjct: 90  GLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIF 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 150 GHSMGGHGALTIYLKNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. TrEMBL
Match: A0A067E321_CITSI (S-formylglutathione hydrolase (Fragment) OS=Citrus sinensis GN=CISIN_1g0233241mg PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.5e-39
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DSWDFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENFPQL+T RASIF
Sbjct: 30  GLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIF 89

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 90  GHSMGGHGALTIYLKNLDKYK 110

[Close]
BLAST of Cucsa.017790 vs. TrEMBL
Match: A0A067DZ46_CITSI (S-formylglutathione hydrolase (Fragment) OS=Citrus sinensis GN=CISIN_1g0233241mg PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.5e-39
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DSWDFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENFPQL+T RASIF
Sbjct: 41  GLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIF 100

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 101 GHSMGGHGALTIYLKNLDKYK 121

[Close]
BLAST of Cucsa.017790 vs. TrEMBL
Match: U5GBI8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04560g PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-38
Identity = 76/81 (93.83%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DSWDFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENFPQL+T +ASIF
Sbjct: 90  GLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSKASIF 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 150 GHSMGGHGALTIYLKNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. TAIR10
Match: AT2G41530.1 (AT2G41530.1 S-formylglutathione hydrolase)

HSP 1 Score: 157.5 bits (397), Expect = 3.4e-39
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DS+DFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENF QLDT +ASI 
Sbjct: 90  GLNVEGEADSYDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFSQLDTTKASIS 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYL+NLDKYK
Sbjct: 150 GHSMGGHGALTIYLRNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. NCBI nr
Match: gi|449449821|ref|XP_004142663.1| (PREDICTED: S-formylglutathione hydrolase isoform X1 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF
Sbjct: 90  GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 150 GHSMGGHGALTIYLKNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. NCBI nr
Match: gi|778694096|ref|XP_011653739.1| (PREDICTED: S-formylglutathione hydrolase isoform X2 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-41
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF
Sbjct: 90  GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 150 GHSMGGHGALTIYLKNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. NCBI nr
Match: gi|641829098|gb|KDO48225.1| (hypothetical protein CISIN_1g0233241mg, partial [Citrus sinensis])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-39
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DSWDFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENFPQL+T RASIF
Sbjct: 30  GLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIF 89

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 90  GHSMGGHGALTIYLKNLDKYK 110

[Close]
BLAST of Cucsa.017790 vs. NCBI nr
Match: gi|567856946|ref|XP_006421156.1| (hypothetical protein CICLE_v10005572mg [Citrus clementina])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-39
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DSWDFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENFPQL+T RASIF
Sbjct: 90  GLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIF 149

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 150 GHSMGGHGALTIYLKNLDKYK 170

[Close]
BLAST of Cucsa.017790 vs. NCBI nr
Match: gi|641829097|gb|KDO48224.1| (hypothetical protein CISIN_1g0233241mg, partial [Citrus sinensis])

HSP 1 Score: 167.5 bits (423), Expect = 9.3e-39
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1 

Query: 1   GLNVEGESDSWDFGVGAGFYLNATQEKWKHWRMYDYVVKELPKLLSENFPQLDTLRASIF 60
           GLNVEGE+DSWDFGVGAGFYLNATQEKWK+WRMYDYVVKELPKLLSENFPQL+T RASIF
Sbjct: 41  GLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIF 100

Query: 61  GHSMGGHGALTIYLKNLDKYK 82
           GHSMGGHGALTIYLKNLDKYK
Sbjct: 101 GHSMGGHGALTIYLKNLDKYK 121

The following BLAST results are available for this feature:
BLAST of Cucsa.017790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SFGH_ARATH6.0e-3890.12S-formylglutathione hydrolase OS=Arabidopsis thaliana GN=SFGH PE=1 SV=2[more]
ESTD_BOVIN1.7e-2463.41S-formylglutathione hydrolase OS=Bos taurus GN=ESD PE=2 SV=1[more]
ESTD_MOUSE2.9e-2463.41S-formylglutathione hydrolase OS=Mus musculus GN=Esd PE=1 SV=1[more]
ESTD_PIG6.5e-2463.41S-formylglutathione hydrolase OS=Sus scrofa GN=ESD PE=2 SV=1[more]
ESTD_HUMAN1.4e-2362.20S-formylglutathione hydrolase OS=Homo sapiens GN=ESD PE=1 SV=2[more]
BLAST of Cucsa.017790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L300_CUCSA3.1e-41100.00S-formylglutathione hydrolase OS=Cucumis sativus GN=Csa_4G337870 PE=3 SV=1[more]
V4SBR1_9ROSI6.5e-3995.06S-formylglutathione hydrolase OS=Citrus clementina GN=CICLE_v10005572mg PE=3 SV=... [more]
A0A067E321_CITSI6.5e-3995.06S-formylglutathione hydrolase (Fragment) OS=Citrus sinensis GN=CISIN_1g0233241mg... [more]
A0A067DZ46_CITSI6.5e-3995.06S-formylglutathione hydrolase (Fragment) OS=Citrus sinensis GN=CISIN_1g0233241mg... [more]
U5GBI8_POPTR1.4e-3893.83Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04560g PE=4 SV=1[more]
BLAST of Cucsa.017790 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41530.13.4e-3990.12 S-formylglutathione hydrolase[more]
BLAST of Cucsa.017790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449821|ref|XP_004142663.1|4.5e-41100.00PREDICTED: S-formylglutathione hydrolase isoform X1 [Cucumis sativus][more]
gi|778694096|ref|XP_011653739.1|4.5e-41100.00PREDICTED: S-formylglutathione hydrolase isoform X2 [Cucumis sativus][more]
gi|641829098|gb|KDO48225.1|9.3e-3995.06hypothetical protein CISIN_1g0233241mg, partial [Citrus sinensis][more]
gi|567856946|ref|XP_006421156.1|9.3e-3995.06hypothetical protein CICLE_v10005572mg [Citrus clementina][more]
gi|641829097|gb|KDO48224.1|9.3e-3995.06hypothetical protein CISIN_1g0233241mg, partial [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000801Esterase_put
IPR014186S-formylglutathione_hydrol
Vocabulary: Molecular Function
TermDefinition
GO:0018738S-formylglutathione hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0046294formaldehyde catabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046294 formaldehyde catabolic process
biological_process GO:0015947 methane metabolic process
cellular_component GO:0048046 apoplast
molecular_function GO:0052689 carboxylic ester hydrolase activity
molecular_function GO:0018738 S-formylglutathione hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.017790.1Cucsa.017790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000801Putative esterasePFAMPF00756Esterasecoord: 5..81
score: 4.7
IPR014186S-formylglutathione hydrolasePANTHERPTHR10061S-FORMYLGLUTATHIONE HYDROLASEcoord: 1..81
score: 2.7
NoneNo IPR availablePANTHERPTHR10061:SF0S-FORMYLGLUTATHIONE HYDROLASEcoord: 1..81
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.017790Cucumber (Chinese Long) v3cgycucB405
Cucsa.017790Cucurbita maxima (Rimu)cgycmaB0738
Cucsa.017790Cucurbita moschata (Rifu)cgycmoB0728
Cucsa.017790Wild cucumber (PI 183967)cgycpiB400
Cucsa.017790Cucumber (Chinese Long) v2cgycuB380
Cucsa.017790Cucurbita pepo (Zucchini)cgycpeB0693