Cucsa.017370 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.017370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	scaffold00245 : 70940 .. 73593 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAACATGATGTTCCTCGTCCTATAAGCCCCATACTTGATGGCTCCAATTATATCACTTGGGCTCACCAAATGAGGAGCTTTCTGATCGGTCGAAAACTATGGCGTATAGTTATCGGCGATATCACCAAACCCACTCCTCCCAAGAGAACAATTAGTAAAGTCACCAATAAAGACATTGATGTCAATAGAGGACGACAAGTACATTGAAAAACTTGAGGACTGAGATAGTAAAAATCATCAAATCATCACTTGGTTGGGTAACACCTCTATCCCTGCAATTCATACTCAATTTGATGCATTTGATATTGCCAAGGATCTTTGGGATTTTCGGTACACAAGGTTTCAGTCCATTGGGCTTGCTCATTATTATCAATTACACTCGTCTTGTGAGTCTAACCCAGAAGGGAGGACAATATGTGAATGAGTATCTTGCCACCCTTCAGCCAATTTGGACTCAACTAGACCAGGCAAAAATTAGTCCAGATCATATTCGCCTCATTCAAGTCCTCATGAGTTTGTGCCTGGAGTATGAATCAATTCGGGCCGCTCTCTTACATCGCAATCCTCTACCATCTCTCGATGCCGCCATTCAAGAAATTTTATTTGAAGAAAAACGTCTTGGCATTGTCTCTCCTTTACCCTCTGATGTTGCGCTTGCAACCACCTATCTACGACCTGCGAATGAGACCACTTTCTGCAAAAATTATAAACTTCATGGTCATAAGTTTGCTAATTGTCCTACTATTGAGTGCAAGTATTGTCACAAGCGAGTGCAAGTATTGTCACAAGCGAGGTCACATCCGGGAAAACTGTCCCACTCGCCCACCCCGCTCTTCTGGTCACTCCTATAAACCCAAGTCTTCTCCTAAAACTGGTTCTCACCCTGTGATTGCTACTGCTAACCCATCTGATATTATTGCCCCTCAAAATGTTCAATTAAATGATCTGCATGACTTACTGAAATAGGTGATCTCTTCCAACTCTACTGCTCTTGCAGTCACTCCAGGTACCTTTTGGCTTCTTGATTCAGCTTGTTGTAATCATATGACTTCTGACATTTCATTGTTGACTTCCCCTATTCATGTTCAATCTCTTCCCCTCATTCATTCAACTGATGGTAATCACATGTCTATTTCTCACATTGGCTCTGTTAATACAACCACCATAAATCTATCAAACACATATCATGTTCCAAATCTCACATTTAACCTAGCCTTTGTTGGCCAACTATGTGATCTCAGACTAACCGTTATATTTTCTTCATGGGTGTCAGGTTCAGGATTCTTAGACGGGACAGGTGATTGGTACGAGACGGAAGGTGGGACGATTATTTGAGCTCACATCTCCTCAGCATTCTCCTATGTTCCCACTCATCTCAGCACCAGTCACTGATAATACTATATACTAGTGGCATCTCCGTCTAGGTCATACTTCCTCTGATAAACTTCATAATTTAGTTTCTACTGGCACCTTGAAAAATGTCCCAAAATTTAGTCCCTTTGACTATTTAAATTGCAAACTTGCGAAACAACCTGCTTTATCATTTTCTAATTCTGCTTCATTATGTGATACTCATTTTGGTCTTATTCATTTTGACATTTGGGGTTCTGCTTTATGTACTACTGTTAATGGTTATTGATATTTTGTCTTATTTATTGATGACTATTCTCGTTTCACTTGGATTTACTTTCTTAAACACCGTTCTTCGTTATATCAAATTTATGTTGATTTTGCGAATATGATTCACACACAATTCTCTAGCACAATTAAAATCCTTCGCGCTGACAATGCGATGGAATATAAAGACTCCCGTCTTCTTTCCTTCATTGCCCATCAAGGCACTTTGATTCAACGCTCATGTCCCCACACCTCCCAGCAGAATGGAAGAGCTGAACGCAAACACCGTCACATTCTAGACTCTGTTCGTGCTCAACTTCTTTCTACTTCCTGTCCTGAAAAAAaTTTGGGGAGAGGCTGCCCTCACCTCAGTCTATGTCATCAACCGCATTCCTTCTCATGTCATTCATTCACAATGTTTCCCCTTTTGAGCGACTATATGGTACTTTCCCTTCTTACTCTAATCTCAAGGTCTTTGGTTGTGCATGTTTTGTATTATTACATCCTCATCAACATACCAAACTTGAACCAAGGGCTCGTCTTTGTTGTTTCTTGGGTTATGGTACTGAACATAAAGGATTTCGCTGTTGGGATCCCATCTCTCTGCGATTACGAATATCCCATCATGTCACCTTTTGGGAACATCGTATGTTCTCTACTCTTTCTTCATTTCATGCATTTCTTTTTGGTCCTCACTTATTTTTCACTAATCCTTCTACTGACCTATTCCCTACTTCTTGCTTATCACTACACCTTGTCCTCTACCCATATCTGAGCTCACTCAACCAGAACCTATCCCTGCGCTCCCGGATCTTCCATCCGTCTCTTGTGAGGATTCTGCATCTGCACCGGCCCGACGGTCTACCCGGGTAAGAGAATCTCCTCCTCATCTTAAAGATTACAATTGTTTTTCCACTATCATGTCTTTGGTTGAACCTTCCTCATATAAGGAAGTCAGTACTAACTCATTGTGGCAGCAAGCAATGAACGAAGAACTCCAAACCTTAGAAAAAACTCATACTTGGGACTAT

mRNA sequence

ATGGAGAAACATGATGTTCCTCGTCCTATAAGCCCCATACTTGATGGCTCCAATTATATCACTTGGGCTCACCAAATGAGGAGCTTTCTGATCGGTCGAAAACTATGGCGTATAGTTATCGGCGATATCACCAAACCCACTCCTCCCAAGAGAACAATTAGTAAAtgcaagtattgtcacaagcgaggtcacatccgggaaaactgtcccactcgcccaccccgctcttctggtcactcctataaacccaagtcttctcctaaaactggttctcaccctgtgattgctactgctaacccatctgatattattgcccctcaaaatgtgatctcttccaactctactgctcttgcagtcactccaggtaccttttggcttcttgattcagcttgttgtaatcatatgacttctgacatttcattgttgacttcccctattcatgttcaatctcttcccctcattcattcaactgatggtaatcacatgtctatttctcacattggctctgttaatacaaccaccataaatctatcaaacacatatcatacgggacaggtgattggtacgagacggaaggtgggacgattatttgagctcacatctcctcagcattctcctatgttcccactcatctcagcaccacgactatatggtactttcccttcttactctaatctcaaggtctttggttgtgcatgttttgtattattacatcctcatcaacataccaaacttgaaccaagggctcgtctttgttgtttcttgggttatggtactgaacataaaggatttcgctgttgggatcccatctctctgcgattacgaatatcccatcatgtcaccttttgggaacatcaacctatccctgcgctcccggatcttccatccgtctcttgtgaggattctgcatctgcaccggcccgacggtctacccgggtaagagaatctcctcctcatcttaaagattacaattgtttttccactatcatgtctttggttgaaccttcctcatataaggaagtcagtactaactcattgtggcagcaagcaatgaaCGAAGAACTCCAAACCTTAGAAAAAACTCATACTTGGGACTAT

Coding sequence (CDS)

ATGGAGAAACATGATGTTCCTCGTCCTATAAGCCCCATACTTGATGGCTCCAATTATATCACTTGGGCTCACCAAATGAGGAGCTTTCTGATCGGTCGAAAACTATGGCGTATAGTTATCGGCGATATCACCAAACCCACTCCTCCCAAGAGAACAATTAGTAAATGCAAGTATTGTCACAAGCGAGGTCACATCCGGGAAAACTGTCCCACTCGCCCACCCCGCTCTTCTGGTCACTCCTATAAACCCAAGTCTTCTCCTAAAACTGGTTCTCACCCTGTGATTGCTACTGCTAACCCATCTGATATTATTGCCCCTCAAAATGTGATCTCTTCCAACTCTACTGCTCTTGCAGTCACTCCAGGTACCTTTTGGCTTCTTGATTCAGCTTGTTGTAATCATATGACTTCTGACATTTCATTGTTGACTTCCCCTATTCATGTTCAATCTCTTCCCCTCATTCATTCAACTGATGGTAATCACATGTCTATTTCTCACATTGGCTCTGTTAATACAACCACCATAAATCTATCAAACACATATCATACGGGACAGGTGATTGGTACGAGACGGAAGGTGGGACGATTATTTGAGCTCACATCTCCTCAGCATTCTCCTATGTTCCCACTCATCTCAGCACCACGACTATATGGTACTTTCCCTTCTTACTCTAATCTCAAGGTCTTTGGTTGTGCATGTTTTGTATTATTACATCCTCATCAACATACCAAACTTGAACCAAGGGCTCGTCTTTGTTGTTTCTTGGGTTATGGTACTGAACATAAAGGATTTCGCTGTTGGGATCCCATCTCTCTGCGATTACGAATATCCCATCATGTCACCTTTTGGGAACATCAACCTATCCCTGCGCTCCCGGATCTTCCATCCGTCTCTTGTGAGGATTCTGCATCTGCACCGGCCCGACGGTCTACCCGGGTAAGAGAATCTCCTCCTCATCTTAAAGATTACAATTGTTTTTCCACTATCATGTCTTTGGTTGAACCTTCCTCATATAAGGAAGTCAGTACTAACTCATTGTGGCAGCAAGCAATGAACGAAGAACTCCAAACCTTAGAAAAAACTCATACTTGGGACTAT

Protein sequence

MEKHDVPRPISPILDGSNYITWAHQMRSFLIGRKLWRIVIGDITKPTPPKRTISKCKYCHKRGHIRENCPTRPPRSSGHSYKPKSSPKTGSHPVIATANPSDIIAPQNVISSNSTALAVTPGTFWLLDSACCNHMTSDISLLTSPIHVQSLPLIHSTDGNHMSISHIGSVNTTTINLSNTYHTGQVIGTRRKVGRLFELTSPQHSPMFPLISAPRLYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRLRISHHVTFWEHQPIPALPDLPSVSCEDSASAPARRSTRVRESPPHLKDYNCFSTIMSLVEPSSYKEVSTNSLWQQAMNEELQTLEKTHTWDY

Homology

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BLAST of Cucsa.017370 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-09
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1


Query: 222 SYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRLRISHHVT 281
           SYS+LKVFGC  F  +   Q TKL+ ++  C F+GYG E  G+R WDP+  ++  S  V 
Sbjct: 644 SYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVV 703

Query: 282 FWEHQ 287
           F E +
Sbjct: 704 FRESE 708

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BLAST of Cucsa.017370 vs. TrEMBL
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002043 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 91/199 (45.73%), Postives = 114/199 (57.29%), Query Frame = 1


Query: 215 RLYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRL 274
           RL+GT PSY +L+VFGCACFVLL PH++TKL+PRARLCCFLGYGTEHKG+R WDPIS  +
Sbjct: 498 RLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYGTEHKGYRVWDPISQCI 557

Query: 275 RISHHVTFWEHQPIPALP-------------------------------------DLPSV 334
           RIS HV FWEH+   +L                                      DLP +
Sbjct: 558 RISRHVVFWEHKMFSSLSTFKSIPSTSTPLFTNPSIDLFPHDFDAGSSDELTGASDLPII 617

Query: 335 ----------SCEDSA-SAPARRSTRVRESPPHLKDYNCFSTIMSLVEPSSYKEVSTNSL 366
                     + +D A   P     RVR+ P +L DY+ FSTIMS  EP +Y+E S +  
Sbjct: 618 PNDLTPAVDPAVQDPALPPPPGLPPRVRKPPSYLHDYHYFSTIMSHYEPQTYREASADPK 677

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BLAST of Cucsa.017370 vs. TrEMBL
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_002043 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 47/183 (25.68%), Postives = 74/183 (40.44%), Query Frame = 1


Query: 53  ISKCKYCHKRGHIRENCPTRPPRSSGHSYKPKSSPKTGSHPVIATANPSDIIAPQNVISS 112
           I +C +C K+GHI  NCPTR P  S   +                     ++   ++I  
Sbjct: 110 IIECHHCRKKGHIAPNCPTRDPNRSSTLF----------------CRYCKLVG--HIIDH 169

Query: 113 NSTALAVTPGTFWLLDSACCNHMTSDISLLTSPIHVQSLPLIHSTDGNHMSISHIGSVNT 172
            +T             SACCNHMTS   + +       +  IH+ DG+ M +SH G ++T
Sbjct: 170 CNTRWYFD--------SACCNHMTSASHVFSDLSSRDRISHIHTADGSLMEVSHKGPIST 229

Query: 173 TTINLSNTY----------------------------------HTGQVIGTRRKVGRLFE 202
            ++++ + Y                                   TG++IG  RK+GR+FE
Sbjct: 230 PSLSMPDAYLIPKLNFNLVSVGQLCDLGYILTFSSTGCSVQDPRTGKIIGNGRKIGRMFE 266

HSP 2 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 84/185 (45.41%), Postives = 105/185 (56.76%), Query Frame = 1


Query: 215  RLYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRL 274
            RL+G+ P Y +L+ FG ACFVLL  H+H KLEPR+RLCCFLGYG   KG+RC+DP+S RL
Sbjct: 968  RLFGSPPVYHHLRSFGSACFVLLQSHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRL 1027

Query: 275  RISH--------HVTFWEHQPIPALPDLPSVS---------------CEDSASAPA---- 334
            R+S           T     P+   PD+  VS                E  + AP     
Sbjct: 1028 RVSQIFPNESLVPSTNTFDPPLDFSPDIFDVSPRQVADEQIDDELPHFETRSPAPTLPED 1087

Query: 335  -------RRSTRVRESPPHLKDYNCFSTIMSLVEPSSYKEVSTNSLWQQAMNEELQTLEK 366
                   R STRVR  PPHL DY+C++ + +L EP +Y+E ST+ LWQ AM EEL  L K
Sbjct: 1088 PPQDIPPRHSTRVRSIPPHLLDYHCYTALATLHEPQTYREASTDPLWQIAMKEELDALTK 1147

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BLAST of Cucsa.017370 vs. TrEMBL
Match: A5BCZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010987 PE=3 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 1.4e+00
Identity = 20/40 (50.00%), Postives = 27/40 (67.50%), Query Frame = 1


Query: 8   RPISPILDGS-NYITWAHQMRSFLIGRKLWRIVIGDITKP 47
           RPI+ IL+G+ NY++W+  MRSFL GR LW      +T P
Sbjct: 331 RPINTILEGNKNYLSWSQAMRSFLKGRMLWHYCTSVMTIP 370

HSP 2 Score: 29.3 bits (64), Expect = 1.2e+04
Identity = 14/37 (37.84%), Postives = 20/37 (54.05%), Query Frame = 1


Query: 328 TIMSLVEPSSYKEVSTNSLWQQAMNEELQTLEKTHTW 365
           +I S  E + Y +V+    WQ AM  +LQ L+   TW
Sbjct: 78  SISSHFESTLYSKVALTPEWQDAMLTKLQALKVNSTW 114

HSP 3 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 82/198 (41.41%), Postives = 107/198 (54.04%), Query Frame = 1


Query: 215 RLYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRL 274
           RL+G+ P+Y +L+ FG ACFVLL PH+H KLE R+RLCCFLGYG   KG+RC+DP+S RL
Sbjct: 103 RLFGSPPNYHHLRSFGSACFVLLQPHEHNKLESRSRLCCFLGYGETQKGYRCYDPVSHRL 162

Query: 275 RISHHVTFWEHQ----------------PIPALPD---LPSVSCED------------SA 334
           R+S +V FWEH+                 +   PD   +PS    D            S 
Sbjct: 163 RVSRNVVFWEHRLFVELSHFRSSLTNSSVLEIFPDESLVPSTHTFDPHLDFSPDIFDASP 222

Query: 335 SAPARRSTRVRES----------------PPHLKDYNCFSTIMSLVEPSSYKEVSTNSLW 366
             P   +  + E                 PPHL DY+C++ + +L EP +Y+E ST+ LW
Sbjct: 223 RQPGSPAPALPEDPPQDIPPGHSTRVRSIPPHLLDYHCYTALATLHEPQTYREASTDPLW 282

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BLAST of Cucsa.017370 vs. TrEMBL
Match: A5AGQ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003815 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.4e-32
Identity = 78/180 (43.33%), Postives = 101/180 (56.11%), Query Frame = 1


Query: 216 LYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRLR 275
           L+G+   Y + + FG ACFVLL PH+H KLEPR+RLCCFLGYG   KG+RC+ P+S RLR
Sbjct: 445 LFGSPLDYHHFRSFGSACFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYYPVSHRLR 504

Query: 276 ISHHV------TF------------------WEHQPIPALPDL------PSVSCEDSASA 335
           +S+        TF                   + Q    LP        P++  +     
Sbjct: 505 VSYESLVPSTNTFDPPLDFSPYIFYASLRQVADEQIDDELPHFEPGSPAPALPKDPPQDI 564

Query: 336 PARRSTRVRESPPHLKDYNCFSTIMSLVEPSSYKEVSTNSLWQQAMNEELQTLEKTHTWD 366
           P R STRVR  PPHL DY+C++ + +L EP +Y+E ST+ LW  AM EEL  L K HTWD
Sbjct: 565 PPRHSTRVRSIPPHLLDYHCYTALATLHEPRTYREASTDPLWHIAMKEELDALTKNHTWD 624

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BLAST of Cucsa.017370 vs. TrEMBL
Match: A0A151UDP3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047550 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.5e-31
Identity = 78/168 (46.43%), Postives = 94/168 (55.95%), Query Frame = 1


Query: 216 LYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRLR 275
           L+GT PSY +L+VFGCACFVLL PH++TKL+PRARLCCFLGYGTEHKG+R WDPIS R+R
Sbjct: 505 LFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYGTEHKGYRVWDPISQRIR 564

Query: 276 ISHHVTFWEHQPIPALP-------------------------------------DLPSV- 335
           IS HV FWEH+   +L                                      DLP + 
Sbjct: 565 ISRHVVFWEHKMFSSLSTFKSIPSTSTPLFTNPSINLFPHDFDAGSSDELTGASDLPMIL 624

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BLAST of Cucsa.017370 vs. NCBI nr
Match: gi|659082032|ref|XP_008441629.1| (PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 2.5e-59
Identity = 169/395 (42.78%), Postives = 193/395 (48.86%), Query Frame = 1


Query: 56  CKYCHKRGHIRENCPTRPPRSSGHSYKPKSSPKTGSHPVIATANPSDIIAPQNVISSNST 115
           C+YCHKRGHI ++CP RPPR +GHS+KPK S K GS        PS       VISSNST
Sbjct: 114 CRYCHKRGHILDHCPIRPPRPTGHSHKPKFSSKAGS--------PS-------VISSNST 173

Query: 116 ALAVTPGTFWLLDSACCNHMTSDISLLTSPIHVQSLPLIHSTDGNHMSISHIGSVNTTTI 175
           ALAVTPGT WLL+SACCNHMTSDISLL+S I V SLP IHS DGNHMSISHI +V  + +
Sbjct: 174 ALAVTPGTSWLLNSACCNHMTSDISLLSSHIPVHSLPPIHSADGNHMSISHIVTVQNSQM 233

Query: 176 NLSNTYHTGQVIGTRRKVGRLFELTSPQHSPMFP-------------------LISAPRL 235
                   GQVIGT RKVGRLFELTS QHSPMFP                     S+ +L
Sbjct: 234 --------GQVIGTGRKVGRLFELTSLQHSPMFPVISTPVTDNTIFQRHLRLGHASSDKL 293

Query: 236 Y-----GTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKG-------- 295
                 G   + S    F C    L    Q     P +   C   +G  H          
Sbjct: 294 RSLASNGILNNVSKFSTFDCLNCKLAK--QPALSFPNSASLCDKPFGLIHSDIWEPAPCA 353

Query: 296 ----FRCWDPISLRLRISHHVTFWEHQPIPALPDLPSVSCEDSASAPARRSTRV---RES 355
               FRCWDPIS RL I  HVTFWE +    L      S   S S     ST +    +S
Sbjct: 354 TVNDFRCWDPISQRLHIYRHVTFWERRMFSNLSSF-HASLSSSHSFFIDHSTNLFPTPDS 413

Query: 356 PPH----------LKDYNCFSTIMSL-----VEP-------------------------- 364
           PP+          L   +  S ++ L      EP                          
Sbjct: 414 PPNTIPCPSPPSELTQSHTTSALLDLPSIPREEPEHAPVRRSTRVRETSSHLKEYHCFST 473

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BLAST of Cucsa.017370 vs. NCBI nr
Match: gi|659082032|ref|XP_008441629.1| (PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 6.7e-52
Identity = 139/272 (51.10%), Postives = 156/272 (57.35%), Query Frame = 1


Query: 1   MEKHDVPRPISPILDGSNYITWAHQMRSFLIGRKLWRIVI-GDIT---KPTPPKRTIS-- 60
           MEK D+  PIS ILDGSNYITWAHQMRSFLIG+KLWRIV+  DIT   KPTPP   I+  
Sbjct: 1   MEKSDIACPISTILDGSNYITWAHQMRSFLIGQKLWRIVVREDITKPVKPTPPVTNIAVV 60

Query: 61  -KCKYCHKR---------------GHIREN------------------CPTRPPRS---- 120
            K  +  KR                H+R+                   CP+   R     
Sbjct: 61  QKILFEEKRLDIVSSMPSDVAFATTHLRQTNETSFYKNCKLHGHKFAYCPSIGCRYCHKR 120

Query: 121 --------------SGHSYKPKSSPKTGSHPVIATANPSDIIAPQNVISSNSTALAVTPG 180
                         +GHS+KPK S K GS                +VISSNSTALAVTPG
Sbjct: 121 GHILDHCPIRPPRPTGHSHKPKFSSKAGS---------------PSVISSNSTALAVTPG 180

Query: 181 TFWLLDSACCNHMTSDISLLTSPIHVQSLPLIHSTDGNHMSISHIGSVNTTTINLSNTYH 215
           T WLL+SACCNHMTSDISLL+S I V SLP IHS DGNHMSISHI +V  + +       
Sbjct: 181 TSWLLNSACCNHMTSDISLLSSHIPVHSLPPIHSADGNHMSISHIVTVQNSQM------- 240

HSP 2 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 118/206 (57.28%), Postives = 130/206 (63.11%), Query Frame = 1


Query: 55  KCKYCHKRGHIRENCPTRPPRSSGHSYKPKSSPKTGSHPVIATANPSDIIAP-------- 114
           +C+YCHKRGHI ++CPTRPPR  GHS+KPK SPK G+  V+A A PSDI AP        
Sbjct: 260 ECRYCHKRGHILDHCPTRPPRPPGHSHKPKFSPKAGTSSVVAAATPSDITAPSTFQLTDL 319

Query: 115 ----QNVISSNSTALAVTPGTFWLLDSACCNHMTSDISLLTSPIHVQSLPLIHSTDGNHM 174
               + VISSNSTALAVT GT WLLD AC NHMTS++S   S I VQSLP IHST GN M
Sbjct: 320 HDLLKQVISSNSTALAVTLGTSWLLDLACYNHMTSELS---SHIPVQSLPPIHSTVGNRM 379

Query: 175 SISHIGSVNTTTINLSNTYH----------------------------------TGQVIG 215
           SISHIG+VNT TI LSNTYH                                  T QVIG
Sbjct: 380 SISHIGTVNTPTIQLSNTYHVPNLTFNLAFVGQLCDIGLTIVFSFHGCQVQDPQTRQVIG 439

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BLAST of Cucsa.017370 vs. NCBI nr
Match: gi|659068873|ref|XP_008446805.1| (PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-12
Identity = 40/49 (81.63%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 1  MEKHDVPRPISPILDGSNYITWAHQMRSFLIGRKLWRIVIGDITKPTPP 50
          MEK D+ RPIS  LDGSNYITWAHQMRSFLIGRKLW IV GDITKP  P
Sbjct: 1  MEKSDIARPIST-LDGSNYITWAHQMRSFLIGRKLWHIVTGDITKPVKP 48

HSP 2 Score: 191.0 bits (484), Expect = 3.6e-45
Identity = 102/193 (52.85%), Postives = 122/193 (63.21%), Query Frame = 1


Query: 215 RLYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPIS--- 274
           +LYGT P+YSNLK FGCACFVLLHPH+HTKLEPR RL CFLGYGTEHKGFRCW+P+S   
Sbjct: 451 KLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLYCFLGYGTEHKGFRCWNPLSNRL 510

Query: 275 ------------LRLRISH-HVTFWEHQPI--------------------------PALP 334
                       +  R+S  H++F   QP                            A+ 
Sbjct: 511 RISRHVTFWEHTMFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAIS 570

Query: 335 DLPSVSC---EDSASAPARRSTRVRESPPHLKDYNCFSTIMSLVEPSSYKEVSTNSLWQQ 363
           D  S+S    E +   P RRSTRVRE P HL+DY+CFSTI+SLVEP+SY+E ST+ LWQ+
Sbjct: 571 DQSSISDDSPEPTPDTPPRRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQK 630

[Close]

BLAST of Cucsa.017370 vs. NCBI nr
Match: gi|659082601|ref|XP_008441928.1| (PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 73/155 (47.10%), Postives = 102/155 (65.81%), Query Frame = 1


Query: 55  KCKYCHKRGHIRENCPTRPPRSSGHSYKPKSSPKTGSHPVIATA--NP-------SDIIA 114
           +C+YCHKRGHI  NCP +PPR   +S + K+  K  +  V+A    NP       SD+ +
Sbjct: 215 ECRYCHKRGHILNNCPIKPPRPRSYSTRAKNFTKPRNSSVVAATLDNPTTLQFQISDLQS 274

Query: 115 PQN-VISSNSTALAVTPGTFWLLDSACCNHMTSDISLLTSPIHVQSLPLIHSTDGNHMSI 174
             N +ISS+S+AL V+ G  WLLDSACCNHMTS+ SL+ +P   +SLPLI++ DGN M+I
Sbjct: 275 LLNQLISSSSSALTVSSGNRWLLDSACCNHMTSNYSLMNTPTPTKSLPLIYAVDGNCMNI 334

Query: 175 SHIGSVNTTTINLSNTYHTGQVIGTRRKVGRLFEL 200
           +HIG+VNT ++NL +TY    +      VG+L +L
Sbjct: 335 THIGTVNTPSMNLPHTYCVPNITFNLVSVGQLCDL 369

HSP 2 Score: 172.2 bits (435), Expect = 1.7e-39
Identity = 91/199 (45.73%), Postives = 114/199 (57.29%), Query Frame = 1


Query: 215 RLYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRL 274
           RL+GT PSY +L+VFGCACFVLL PH++TKL+PRARLCCFLGYGTEHKG+R WDPIS  +
Sbjct: 498 RLFGTPPSYESLRVFGCACFVLLQPHEYTKLQPRARLCCFLGYGTEHKGYRVWDPISQCI 557

Query: 275 RISHHVTFWEHQPIPALP-------------------------------------DLPSV 334
           RIS HV FWEH+   +L                                      DLP +
Sbjct: 558 RISRHVVFWEHKMFSSLSTFKSIPSTSTPLFTNPSIDLFPHDFDAGSSDELTGASDLPII 617

Query: 335 ----------SCEDSA-SAPARRSTRVRESPPHLKDYNCFSTIMSLVEPSSYKEVSTNSL 366
                     + +D A   P     RVR+ P +L DY+ FSTIMS  EP +Y+E S +  
Sbjct: 618 PNDLTPAVDPAVQDPALPPPPGLPPRVRKPPSYLHDYHYFSTIMSHYEPQTYREASADPK 677

[Close]

BLAST of Cucsa.017370 vs. NCBI nr
Match: gi|1012344626|gb|KYP55818.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 47/183 (25.68%), Postives = 74/183 (40.44%), Query Frame = 1


Query: 53  ISKCKYCHKRGHIRENCPTRPPRSSGHSYKPKSSPKTGSHPVIATANPSDIIAPQNVISS 112
           I +C +C K+GHI  NCPTR P  S   +                     ++   ++I  
Sbjct: 110 IIECHHCRKKGHIAPNCPTRDPNRSSTLF----------------CRYCKLVG--HIIDH 169

Query: 113 NSTALAVTPGTFWLLDSACCNHMTSDISLLTSPIHVQSLPLIHSTDGNHMSISHIGSVNT 172
            +T             SACCNHMTS   + +       +  IH+ DG+ M +SH G ++T
Sbjct: 170 CNTRWYFD--------SACCNHMTSASHVFSDLSSRDRISHIHTADGSLMEVSHKGPIST 229

Query: 173 TTINLSNTY----------------------------------HTGQVIGTRRKVGRLFE 202
            ++++ + Y                                   TG++IG  RK+GR+FE
Sbjct: 230 PSLSMPDAYLIPKLNFNLVSVGQLCDLGYILTFSSTGCSVQDPRTGKIIGNGRKIGRMFE 266

HSP 2 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 84/185 (45.41%), Postives = 105/185 (56.76%), Query Frame = 1


Query: 215  RLYGTFPSYSNLKVFGCACFVLLHPHQHTKLEPRARLCCFLGYGTEHKGFRCWDPISLRL 274
            RL+G+ P Y +L+ FG ACFVLL  H+H KLEPR+RLCCFLGYG   KG+RC+DP+S RL
Sbjct: 968  RLFGSPPVYHHLRSFGSACFVLLQSHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRL 1027

Query: 275  RISH--------HVTFWEHQPIPALPDLPSVS---------------CEDSASAPA---- 334
            R+S           T     P+   PD+  VS                E  + AP     
Sbjct: 1028 RVSQIFPNESLVPSTNTFDPPLDFSPDIFDVSPRQVADEQIDDELPHFETRSPAPTLPED 1087

Query: 335  -------RRSTRVRESPPHLKDYNCFSTIMSLVEPSSYKEVSTNSLWQQAMNEELQTLEK 366
                   R STRVR  PPHL DY+C++ + +L EP +Y+E ST+ LWQ AM EEL  L K
Sbjct: 1088 PPQDIPPRHSTRVRSIPPHLLDYHCYTALATLHEPQTYREASTDPLWQIAMKEELDALTK 1147

The following BLAST results are available for this feature:

BLAST of Cucsa.017370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	4.1e-09	44.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Cucsa.017370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151SM08_CAJCA	1.2e-39	45.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151SM08_CAJCA	1.2e-07	25.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5BCZ7_VITVI	1.4e+00	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010987 PE=3 SV=1	[more]
A5AGQ1_VITVI	2.4e-32	43.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003815 PE=4 SV=1	[more]
A0A151UDP3_CAJCA	3.5e-31	46.43	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of Cucsa.017370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082032\|ref\|XP_008441629.1\|	2.5e-59	42.78	PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]	[more]
gi\|659082032\|ref\|XP_008441629.1\|	6.7e-52	51.10	PREDICTED: uncharacterized protein LOC103485710 [Cucumis melo]	[more]
gi\|659068873\|ref\|XP_008446805.1\|	1.0e-12	81.63	PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]	[more]
gi\|659082601\|ref\|XP_008441928.1\|	1.6e-29	47.10	PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]	[more]
gi\|1012344626\|gb\|KYP55818.1\|	1.7e-07	25.68	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR025314	DUF4219

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.017370.1	Cucsa.017370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 50..82 score: 6.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 55..70 score: 8
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 54..78 score: 4.1
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..39 score: 3.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 55..91 score: 1.0E-41coord: 122..365 score: 1.0
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 55..91 score: 1.0E-41coord: 122..365 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.017370	Silver-seed gourd	carcgyB1169
Cucsa.017370	Silver-seed gourd	carcgyB1074
Cucsa.017370	Cucumber (Chinese Long) v3	cgycucB401
Cucsa.017370	Watermelon (97103) v2	cgywmbB459
Cucsa.017370	Wax gourd	cgywgoB534
Cucsa.017370	Cucurbita maxima (Rimu)	cgycmaB0734
Cucsa.017370	Cucurbita maxima (Rimu)	cgycmaB0735
Cucsa.017370	Cucurbita moschata (Rifu)	cgycmoB0723
Cucsa.017370	Cucurbita moschata (Rifu)	cgycmoB0724
Cucsa.017370	Wild cucumber (PI 183967)	cgycpiB396
Cucsa.017370	Cucumber (Chinese Long) v2	cgycuB376
Cucsa.017370	Melon (DHL92) v3.5.1	cgymeB440
Cucsa.017370	Watermelon (Charleston Gray)	cgywcgB458
Cucsa.017370	Watermelon (97103) v1	cgywmB485
Cucsa.017370	Cucurbita pepo (Zucchini)	cgycpeB0689
Cucsa.017370	Cucurbita pepo (Zucchini)	cgycpeB0690
Cucsa.017370	Bottle gourd (USVL1VR-Ls)	cgylsiB424
Cucsa.017370	Melon (DHL92) v3.6.1	cgymedB435