Cucsa.012640 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.012640
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protease Do-like 7
Location	scaffold00164 : 322409 .. 323085 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACGGGAAATAGAGAAAGAACCGAAGAGGGTTGCGGAGAACGGAGAGAACTTACCTTGTGGTCATCCCAATCTATGATGGTTTCCTCGTAATTTTACTAAAACATGAATATGTAGAGCAGTGGGAAAGGTTATAGGATGGGATTGGAAGGCTGTTTGTATGTAGTTTCTTTTGGGTGGGGGCTCTCTCATCCACCAGCCCTTAGCTTATTGCTCTTTTGCTTTTCTGAATATATTCTATCTCTAAAAAATATTTGTTTCTTATTAAAATTTTTTTtATGTAATATCACTCAGTCTGCTTGCTTCTTCTGTTTGGTAGATGAAATAAAGATAGCAAACATTGTAAAAAATTGGTTGAAAACCTGTTCCATGGAAGTGTGCAACGGACATGGATAAGCGAATGAAATGATACTCTTGCATGACTGTTTTATTCGTGAATGTTCACCTTGACATGCTTCATCCATTTGTGTTTTGTGGGATTATGTTACTAAAGTATTTTCATATCGTTTTTTCTCAATGTGGTATTGAACTTGATCGGCTTATGATGTGAACTTTAGGTACAGGATCTACATTCCATAACTCCTGACTACTTTTTAGAAGTAGGCGGTGCAGTGATACATCCTCTTTCATACCAGCAGGTGGGTGGAAACTACAGTTTTTGTATGTTGCAAAAA

mRNA sequence

ATGGCTACGGGAAATAGAGAAAGAACCGAAGAGGGTTGCGGAGAACGGAGAGAACTTACCTTGTGGTCATCCCAATCTATGATGGTACAGGATCTACATTCCATAACTCCTGACTACTTTTTAGAAGTAGGCGGTGCAGTGATACATCCTCTTTCATACCAGCAGGTGGGTGGAAACTACAGTTTTTGTATGTTGCAAAAA

Coding sequence (CDS)

ATGGCTACGGGAAATAGAGAAAGAACCGAAGAGGGTTGCGGAGAACGGAGAGAACTTACCTTGTGGTCATCCCAATCTATGATGGTACAGGATCTACATTCCATAACTCCTGACTACTTTTTAGAAGTAGGCGGTGCAGTGATACATCCTCTTTCATACCAGCAGGTGGGTGGAAACTACAGTTTTTGTATGTTGCAAAAA

Protein sequence

MATGNRERTEEGCGERRELTLWSSQSMMVQDLHSITPDYFLEVGGAVIHPLSYQQVGGNYSFCMLQK

Homology

[Close]

BLAST of Cucsa.012640 vs. Swiss-Prot
Match: DEGP7_ARATH (Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-08
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 10  EEGCGERRELTLWS-----SQSMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++G G+  EL +       S S+ VQDLHSITPD+FLEV GAVIHPLSYQQ
Sbjct: 344 DDGVGQILELEIERGGQPLSVSVSVQDLHSITPDHFLEVSGAVIHPLSYQQ 394

[Close]

BLAST of Cucsa.012640 vs. TrEMBL
Match: U5FHD8_POPTR (DegP protease family protein OS=Populus trichocarpa GN=POPTR_0017s03050g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.3e-07
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 26  SMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++MVQDLHSITPDYFLEV GAVIHPLSYQQ
Sbjct: 366 NLMVQDLHSITPDYFLEVSGAVIHPLSYQQ 395

[Close]

BLAST of Cucsa.012640 vs. TrEMBL
Match: A0A0L9U8V2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g259000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 24  SQSMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           S +++VQDLHSITPDYFLEV GAVIHPLSYQQ
Sbjct: 363 SLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQ 394

[Close]

BLAST of Cucsa.012640 vs. TrEMBL
Match: I1LME4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G218000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 24  SQSMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           S +++VQDLHSITPDYFLEV GAVIHPLSYQQ
Sbjct: 363 SLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQ 394

[Close]

BLAST of Cucsa.012640 vs. TrEMBL
Match: A0A0R0HTR5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G218000 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 24  SQSMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           S +++VQDLHSITPDYFLEV GAVIHPLSYQQ
Sbjct: 363 SLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQ 394

[Close]

BLAST of Cucsa.012640 vs. TrEMBL
Match: A0A0S3RZN1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G365700 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1


Query: 24  SQSMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           S +++VQDLHSITPDYFLEV GAVIHPLSYQQ
Sbjct: 363 SLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQ 394

[Close]

BLAST of Cucsa.012640 vs. TAIR10
Match: AT3G03380.1 (AT3G03380.1 DegP protease 7)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-09
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 10  EEGCGERRELTLWS-----SQSMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++G G+  EL +       S S+ VQDLHSITPD+FLEV GAVIHPLSYQQ
Sbjct: 344 DDGVGQILELEIERGGQPLSVSVSVQDLHSITPDHFLEVSGAVIHPLSYQQ 394

[Close]

BLAST of Cucsa.012640 vs. NCBI nr
Match: gi|449464156|ref|XP_004149795.1| (PREDICTED: protease Do-like 7 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1


Query: 27  MMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++VQDLHSITPDYFLEVGGAVIHPLSYQQ
Sbjct: 367 LVVQDLHSITPDYFLEVGGAVIHPLSYQQ 395

[Close]

BLAST of Cucsa.012640 vs. NCBI nr
Match: gi|659114478|ref|XP_008457071.1| (PREDICTED: protease Do-like 7 isoform X2 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1


Query: 27  MMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++VQDLHSITPDYFLEVGGAVIHPLSYQQ
Sbjct: 367 LVVQDLHSITPDYFLEVGGAVIHPLSYQQ 395

[Close]

BLAST of Cucsa.012640 vs. NCBI nr
Match: gi|659114480|ref|XP_008457072.1| (PREDICTED: protease Do-like 7 isoform X3 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1


Query: 27  MMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++VQDLHSITPDYFLEVGGAVIHPLSYQQ
Sbjct: 135 LVVQDLHSITPDYFLEVGGAVIHPLSYQQ 163

[Close]

BLAST of Cucsa.012640 vs. NCBI nr
Match: gi|659114476|ref|XP_008457070.1| (PREDICTED: protease Do-like 7 isoform X1 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 1


Query: 27  MMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++VQDLHSITPDYFLEVGGAVIHPLSYQQ
Sbjct: 367 LVVQDLHSITPDYFLEVGGAVIHPLSYQQ 395

[Close]

BLAST of Cucsa.012640 vs. NCBI nr
Match: gi|566211039|ref|XP_006372593.1| (DegP protease family protein [Populus trichocarpa])

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1


Query: 26  SMMVQDLHSITPDYFLEVGGAVIHPLSYQQ 56
           ++MVQDLHSITPDYFLEV GAVIHPLSYQQ
Sbjct: 366 NLMVQDLHSITPDYFLEVSGAVIHPLSYQQ 395

The following BLAST results are available for this feature:

BLAST of Cucsa.012640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEGP7_ARATH	3.2e-08	60.78	Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1	[more]

BLAST of Cucsa.012640 vs. TrEMBL


Match Name	E-value	Identity	Description
U5FHD8_POPTR	9.3e-07	90.00	DegP protease family protein OS=Populus trichocarpa GN=POPTR_0017s03050g PE=4 SV...	[more]
A0A0L9U8V2_PHAAN	1.2e-06	84.38	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g259000 PE=4 SV=1	[more]
I1LME4_SOYBN	1.2e-06	84.38	Uncharacterized protein OS=Glycine max GN=GLYMA_11G218000 PE=4 SV=1	[more]
A0A0R0HTR5_SOYBN	1.2e-06	84.38	Uncharacterized protein OS=Glycine max GN=GLYMA_11G218000 PE=4 SV=1	[more]
A0A0S3RZN1_PHAAN	1.2e-06	84.38	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G365700 PE=...	[more]

BLAST of Cucsa.012640 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03380.1	1.8e-09	60.78	DegP protease 7	[more]

BLAST of Cucsa.012640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464156\|ref\|XP_004149795.1\|	1.0e-06	93.10	PREDICTED: protease Do-like 7 [Cucumis sativus]	[more]
gi\|659114478\|ref\|XP_008457071.1\|	1.0e-06	93.10	PREDICTED: protease Do-like 7 isoform X2 [Cucumis melo]	[more]
gi\|659114480\|ref\|XP_008457072.1\|	1.0e-06	93.10	PREDICTED: protease Do-like 7 isoform X3 [Cucumis melo]	[more]
gi\|659114476\|ref\|XP_008457070.1\|	1.0e-06	93.10	PREDICTED: protease Do-like 7 isoform X1 [Cucumis melo]	[more]
gi\|566211039\|ref\|XP_006372593.1\|	1.3e-06	90.00	DegP protease family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025926	PDZ-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.012640.1	Cucsa.012640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025926	PDZ-like domain	PFAM	PF12812	PDZ_1	coord: 34..56 score: 4.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.012640	Bhi01G001349	Wax gourd	cgywgoB393
Cucsa.012640	Carg07445	Silver-seed gourd	carcgyB0859

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.012640	Watermelon (97103) v2	cgywmbB351
Cucsa.012640	Cucurbita maxima (Rimu)	cgycmaB0548
Cucsa.012640	Cucurbita maxima (Rimu)	cgycmaB0551
Cucsa.012640	Cucurbita moschata (Rifu)	cgycmoB0549
Cucsa.012640	Cucurbita moschata (Rifu)	cgycmoB0552
Cucsa.012640	Wild cucumber (PI 183967)	cgycpiB299
Cucsa.012640	Cucumber (Chinese Long) v2	cgycuB290
Cucsa.012640	Melon (DHL92) v3.5.1	cgymeB343
Cucsa.012640	Watermelon (Charleston Gray)	cgywcgB345
Cucsa.012640	Watermelon (97103) v1	cgywmB367
Cucsa.012640	Cucurbita pepo (Zucchini)	cgycpeB0531
Cucsa.012640	Cucurbita pepo (Zucchini)	cgycpeB0532
Cucsa.012640	Bottle gourd (USVL1VR-Ls)	cgylsiB322
Cucsa.012640	Melon (DHL92) v3.6.1	cgymedB338
Cucsa.012640	Cucumber (Chinese Long) v3	cgycucB303