Cucsa.012530 (gene) Cucumber (Gy14) v1

NameCucsa.012530
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold00164 : 97327 .. 98541 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ttttgagttggcaaatGCTCAAaCAATGTTtACGAcTTGATGAaCAAAaTGTTtAATGATCTCTTAGACACTTTCGTGATTGTATTTATTGACGATATCTTAATTtATtCCAAGACAGGGATAACACATGAGGAGCATTTAGCATGGTTTTAGAGGATCTTCGAGTCAACGAATTGTATGTAAAGTTTTCAAAATGTGAGTTTTGGATAAGGCCGAGTATCTTTCCAAACCATGTGATATCTAGAGATGACATTTATGTGGATCTCACAAAAGATTGAAGTCGTTACTAGTTGGCCTCGACCTTTCATAGtcAGTGAGGTTCGTAGTCTTTTtGGGTTttGCAGGTTATTACTAACGATTTGTATAAGacTTTtCTtGTATAGCTACTCCTTTGACTCAGTTAACTAAGAAACGGGACTCCGTTTGTTTGGGACAAAACCTATGAGGATAGTGTTCAGGATCTAAGCAGAAGCTTGTATAACTCCCGTGCTTGCCATACATGATGGTTCACAAAGTTTCGTAATTTATATTGATGCTTCTAGGAAAGTTTAGAAAGTGTTCTGATTCAACAAGTTAAAGTAGTTGCTTATGCTCCTCGTCAGTTGAAGAGTCATGAGGAAAATTATCCAACTTATGATATGGAATTGACAGTTGTGGTTTTTGCATTAACGATTAGAAGGAACTATTTGTATGATGAAAAGATATAGATATTTTGTAATAAAAAAAAaGGTCTAAACTACTTCTTCACTCAAAAGAAGCTGAGTATGAGATAGCAAAGATGGTTTGAATTAGTAAATGACTATGATTGTGAGATTTTGTACCATCTAGATAAGGAGAATTTTGTAGTTGATGATCTTCGTAGAAAAGTATCACATTTCGACAGCACTTATTACCAGACAGATTCCATTACACAAACACCGTGAGAGAGCTGAGATTGTAGTTTCAGTGGGAGAAGTCACCTCACAGTTAGCTCAGTTGTCAGTACAACCGACCTTGAGACAAAGAATTGTTGTTGTTCAGTTCATTAAACCTTATTTGATTGAGAAGCGTCACCTAGTAGAAGTAGGGAAAGGTAAGAAGTTCTCCATATCCTCTGATGGCGAACTTATGTTTGAGAAAGGATTATGTGAGCCAACAGACAAAGCAGTTAAGGTAGAATTATTGATTAAGGCTCATAGTTCCCCATTTTCCATGCATCTTGGTAGTACAAAATAA

mRNA sequence

ttttgagttggcaaatgctcaaacaatgtttacgacttgatgaacaaaatgtttaatgatctcttagacactttcgtgattgtatttattgacgatatcttaatttattccaagacagggataacacatgaggagcatttagcatggttttagaggatcttcgagtcaacgaattgtatgtaaagttttcaaaatgtgagttttggataaggccgagtatctttccaaaccatgtgatatctagagatgacatttatgtggatctcacaaaagattgaagtcgttactagttggcctcgacctttcatagtcagtgaggttcgtagtctttttgggttttgcaggttattactaacgatttgtataagacttttcttgtatagctactcctttgactcagttaactaagaaacgggactccgtttgtttgggacaaaacctatgaggatagtgttcaggatctaagcagaagcttgtataactcccgtgcttgccatacatgatggttcacaaagtttcgtaatttatattgatgcttctaggaaagtttagaaagtgttctgattcaacaagttaaagtagttgcttatgctcctcgtcagttgaagagtcatgaggaaaattatccaacttatgatatggaattgacagttgtggtttttgcattaacgattagaaggaactatttgtatgatgaaaagatatagatattttgtaataaaaaaaaaggtctaaactacttcttcactcaaaagaagctgagtatgagatagcaaagatggtttgaattagtaaatgactatgattgtgagattttgtaccatctagataaggagaattttgtagttgatgatcttcgtagaaaagtatcacatttcgacagcacttattaccagacagattccattacacaaacaccgtgagagagctgagattgtagtttcagtgggagaagtcacctcacagttagctcagttgtcagtacaaccgaccttgagacaaagaattgttgttgttcagttcattaaaccttatttgattgagaagcgtcacctagtagaagtagggaaaggtaagaagttctccatatcctctgatggcgaacttatgtttgagaaaggattatgtgagccaacagacaaagcagttaaggtagaattattgattaaggctcatagttccccattttccatgcatcttggtagtacaaaataa

Coding sequence (CDS)

ATGATCTTCGTAGAAAAGTATCACATTTCGACAGCACTTATTACCAGACAGATTCCATTACACAAACACCGTGAGAGAGCTGAGATTGTAGTTTCAGTGGGAGAAGTCACCTCACAGTTAGCTCAGTTGTCAGTACAACCGACCTTGAGACAAAGAATTGTTGTTGTTCAGTTCATTAAACCTTATTTGATTGAGAAGCGTCACCTAGTAGAAGTAGGGAAAGGTAAGAAGTTCTCCATATCCTCTGATGGCGAACTTATGTTTGAGAAAGGATTATGTGAGCCAACAGACAAAGCAGTTAAGGTAGAATTATTGATTAAGGCTCATAGTTCCCCATTTTCCATGCATCTTGGTAGTACAAAATAA

Protein sequence

MIFVEKYHISTALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK*
BLAST of Cucsa.012530 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-32
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S ALITRQ PLH+  ERAEI V VG VT QLAQL+VQPTLRQRI+  Q   PYL+EKR L
Sbjct: 408 SAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGL 467

Query: 70  VEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
            E G+  +FS+SSDG L+FE+ LC P+D AVK ELL +AHSSPFSMH GST+
Sbjct: 468 AEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTE 519

BLAST of Cucsa.012530 vs. TrEMBL
Match: E5GCE2_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-20
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1

Query: 23  HRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKGKKFSISS 82
           H  +A +V     ++ +LAQL+VQPTLRQ+I+  Q   PYL+ KR L E G+  +FSISS
Sbjct: 811 HPGKANVVADA--LSRKLAQLTVQPTLRQKIIDAQSNNPYLVGKRGLAETGQAVEFSISS 870

Query: 83  DGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
           DG L+FE+ L  P+D AVK ELL +AHSSPFSMH GSTK
Sbjct: 871 DGGLLFERRLYVPSDSAVKTELLSEAHSSPFSMHSGSTK 907

BLAST of Cucsa.012530 vs. TrEMBL
Match: M5WLY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 1

Query: 16  RQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKG 75
           R +PL     +  I + V    + LA L V+P L +RI+  Q   P +   R  V  G  
Sbjct: 687 RYLPLMVEMRKLRIGLDVDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDR 746

Query: 76  KKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
              S+ +DG LM    L  P D+A+K E+L +AH S F+MH GSTK
Sbjct: 747 TDCSVRNDGALMVGNRLYVPNDEALKREILEEAHESAFAMHPGSTK 792

BLAST of Cucsa.012530 vs. TrEMBL
Match: M5XLP5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 1

Query: 16  RQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKG 75
           R +PL     +  + + V    + LA L V+P L +RI+  Q   P +   R  V  G  
Sbjct: 45  RYLPLMVEMRKLRVGLHVDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDR 104

Query: 76  KKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
              S+ +DG LM    L  P D+A+K E+L +AH S F+MH GSTK
Sbjct: 105 TDCSVRNDGALMVGNRLYVPNDEALKREILEEAHESAFAMHPGSTK 150

BLAST of Cucsa.012530 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-07
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 1

Query: 11   TALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLV 70
            T L T  +PL     +  + + + +    LA L V+P L +RI+V Q   P L   R  V
Sbjct: 980  THLRTTYLPLLVELRKDGVELEMTQQGGILASLHVRPILVERIIVAQLGDPTLCRIRGEV 1039

Query: 71   EVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
            E G  K ++I  DG L+    L  P +  +K E+L +AH S ++MH GSTK
Sbjct: 1040 ESGSRKDYAIRGDGALVTGTRLHVPKNDYLKREILEEAHCSTYTMHPGSTK 1090

BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-32
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S ALITRQ PLH+  ERAEI V VG VT QLAQL+VQPTLRQRI+  Q   PYL+EKR L
Sbjct: 408 SAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGL 467

Query: 70  VEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
            E G+  +FS+SSDG L+FE+ LC P+D AVK ELL +AHSSPFSMH GST+
Sbjct: 468 AEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTE 519

BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|659123320|ref|XP_008461603.1| (PREDICTED: uncharacterized protein LOC103500166 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 4.2e-27
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 1

Query: 5   EKYHISTALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLI 64
           +K   S  LIT Q+ LH+  ER EI VS+GEVTSQLAQLS+Q T RQRI+V Q    YL+
Sbjct: 58  KKVSHSPTLITEQVFLHRDFERTEIAVSIGEVTSQLAQLSMQSTFRQRIIVAQLNYLYLV 117

Query: 65  EKRHLVEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
           EK  LVEVG+ ++FSISSD   MFE+ LC   D  VK+ELL KA+SS F MH GSTK
Sbjct: 118 EKHRLVEVGQVEEFSISSDDGFMFERRLCMSADNVVKIELLTKAYSSLFFMHYGSTK 174

BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|307136318|gb|ADN34141.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-20
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1

Query: 23  HRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKGKKFSISS 82
           H  +A +V     ++ +LAQL+VQPTLRQ+I+  Q   PYL+ KR L E G+  +FSISS
Sbjct: 811 HPGKANVVADA--LSRKLAQLTVQPTLRQKIIDAQSNNPYLVGKRGLAETGQAVEFSISS 870

Query: 83  DGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
           DG L+FE+ L  P+D AVK ELL +AHSSPFSMH GSTK
Sbjct: 871 DGGLLFERRLYVPSDSAVKTELLSEAHSSPFSMHSGSTK 907

BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|659114282|ref|XP_008456990.1| (PREDICTED: uncharacterized protein LOC103496779 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S ALIT Q+PLH+  E+ +I VSVGE+TSQLAQL++Q TLRQRI V Q    +L+EK  L
Sbjct: 38  SAALITEQVPLHRDFEKDKIAVSVGEITSQLAQLAMQLTLRQRINVTQLNDLFLVEKHRL 97

Query: 70  VEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELL 106
            +  + ++FSISSD  LM ++ LC PTD AVK ELL
Sbjct: 98  AKARQDEEFSISSDDGLMLKRQLCVPTDSAVKTELL 133

BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|778721994|ref|XP_011658388.1| (PREDICTED: uncharacterized protein LOC105435984 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S AL+T Q+PLHK  ERAEI V VGEVTS+LAQLSVQPTLRQ+I VVQ   PYL++K  L
Sbjct: 199 SAALVTNQVPLHKVLERAEIAVLVGEVTSKLAQLSVQPTLRQQITVVQHNDPYLVKKSRL 258

Query: 70  VEVGKGKKFSISSDGELMF 89
           VEVG+ K+FS+S D E++F
Sbjct: 259 VEVGQTKEFSMSFDDEIVF 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q84KB0_CUCME6.8e-3266.96Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCE2_CUCME3.5e-2056.57Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
M5WLY8_PRUPE2.0e-0737.74Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1[more]
M5XLP5_PRUPE3.4e-0736.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1[more]
M5VK25_PRUPE9.9e-0736.04Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|28558781|gb|AAO45752.1|9.8e-3266.96pol protein [Cucumis melo subsp. melo][more]
gi|659123320|ref|XP_008461603.1|4.2e-2759.83PREDICTED: uncharacterized protein LOC103500166 [Cucumis melo][more]
gi|307136318|gb|ADN34141.1|5.0e-2056.57ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659114282|ref|XP_008456990.1|1.5e-1957.29PREDICTED: uncharacterized protein LOC103496779 [Cucumis melo][more]
gi|778721994|ref|XP_011658388.1|3.3e-1967.09PREDICTED: uncharacterized protein LOC105435984 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.012530.1Cucsa.012530.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None