Cucsa.012530 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.012530
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold00164 : 97327 .. 98541 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ttttgagttggcaaatGCTCAAaCAATGTTtACGAcTTGATGAaCAAAaTGTTtAATGATCTCTTAGACACTTTCGTGATTGTATTTATTGACGATATCTTAATTtATtCCAAGACAGGGATAACACATGAGGAGCATTTAGCATGGTTTTAGAGGATCTTCGAGTCAACGAATTGTATGTAAAGTTTTCAAAATGTGAGTTTTGGATAAGGCCGAGTATCTTTCCAAACCATGTGATATCTAGAGATGACATTTATGTGGATCTCACAAAAGATTGAAGTCGTTACTAGTTGGCCTCGACCTTTCATAGtcAGTGAGGTTCGTAGTCTTTTtGGGTTttGCAGGTTATTACTAACGATTTGTATAAGacTTTtCTtGTATAGCTACTCCTTTGACTCAGTTAACTAAGAAACGGGACTCCGTTTGTTTGGGACAAAACCTATGAGGATAGTGTTCAGGATCTAAGCAGAAGCTTGTATAACTCCCGTGCTTGCCATACATGATGGTTCACAAAGTTTCGTAATTTATATTGATGCTTCTAGGAAAGTTTAGAAAGTGTTCTGATTCAACAAGTTAAAGTAGTTGCTTATGCTCCTCGTCAGTTGAAGAGTCATGAGGAAAATTATCCAACTTATGATATGGAATTGACAGTTGTGGTTTTTGCATTAACGATTAGAAGGAACTATTTGTATGATGAAAAGATATAGATATTTTGTAATAAAAAAAAaGGTCTAAACTACTTCTTCACTCAAAAGAAGCTGAGTATGAGATAGCAAAGATGGTTTGAATTAGTAAATGACTATGATTGTGAGATTTTGTACCATCTAGATAAGGAGAATTTTGTAGTTGATGATCTTCGTAGAAAAGTATCACATTTCGACAGCACTTATTACCAGACAGATTCCATTACACAAACACCGTGAGAGAGCTGAGATTGTAGTTTCAGTGGGAGAAGTCACCTCACAGTTAGCTCAGTTGTCAGTACAACCGACCTTGAGACAAAGAATTGTTGTTGTTCAGTTCATTAAACCTTATTTGATTGAGAAGCGTCACCTAGTAGAAGTAGGGAAAGGTAAGAAGTTCTCCATATCCTCTGATGGCGAACTTATGTTTGAGAAAGGATTATGTGAGCCAACAGACAAAGCAGTTAAGGTAGAATTATTGATTAAGGCTCATAGTTCCCCATTTTCCATGCATCTTGGTAGTACAAAATAA

mRNA sequence

ttttgagttggcaaatgctcaaacaatgtttacgacttgatgaacaaaatgtttaatgatctcttagacactttcgtgattgtatttattgacgatatcttaatttattccaagacagggataacacatgaggagcatttagcatggttttagaggatcttcgagtcaacgaattgtatgtaaagttttcaaaatgtgagttttggataaggccgagtatctttccaaaccatgtgatatctagagatgacatttatgtggatctcacaaaagattgaagtcgttactagttggcctcgacctttcatagtcagtgaggttcgtagtctttttgggttttgcaggttattactaacgatttgtataagacttttcttgtatagctactcctttgactcagttaactaagaaacgggactccgtttgtttgggacaaaacctatgaggatagtgttcaggatctaagcagaagcttgtataactcccgtgcttgccatacatgatggttcacaaagtttcgtaatttatattgatgcttctaggaaagtttagaaagtgttctgattcaacaagttaaagtagttgcttatgctcctcgtcagttgaagagtcatgaggaaaattatccaacttatgatatggaattgacagttgtggtttttgcattaacgattagaaggaactatttgtatgatgaaaagatatagatattttgtaataaaaaaaaaggtctaaactacttcttcactcaaaagaagctgagtatgagatagcaaagatggtttgaattagtaaatgactatgattgtgagattttgtaccatctagataaggagaattttgtagttgatgatcttcgtagaaaagtatcacatttcgacagcacttattaccagacagattccattacacaaacaccgtgagagagctgagattgtagtttcagtgggagaagtcacctcacagttagctcagttgtcagtacaaccgaccttgagacaaagaattgttgttgttcagttcattaaaccttatttgattgagaagcgtcacctagtagaagtagggaaaggtaagaagttctccatatcctctgatggcgaacttatgtttgagaaaggattatgtgagccaacagacaaagcagttaaggtagaattattgattaaggctcatagttccccattttccatgcatcttggtagtacaaaataa

Coding sequence (CDS)

ATGATCTTCGTAGAAAAGTATCACATTTCGACAGCACTTATTACCAGACAGATTCCATTACACAAACACCGTGAGAGAGCTGAGATTGTAGTTTCAGTGGGAGAAGTCACCTCACAGTTAGCTCAGTTGTCAGTACAACCGACCTTGAGACAAAGAATTGTTGTTGTTCAGTTCATTAAACCTTATTTGATTGAGAAGCGTCACCTAGTAGAAGTAGGGAAAGGTAAGAAGTTCTCCATATCCTCTGATGGCGAACTTATGTTTGAGAAAGGATTATGTGAGCCAACAGACAAAGCAGTTAAGGTAGAATTATTGATTAAGGCTCATAGTTCCCCATTTTCCATGCATCTTGGTAGTACAAAATAA

Protein sequence

MIFVEKYHISTALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK*
Homology
[Close]
BLAST of Cucsa.012530 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-32
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1 

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S ALITRQ PLH+  ERAEI V VG VT QLAQL+VQPTLRQRI+  Q   PYL+EKR L
Sbjct: 408 SAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGL 467

Query: 70  VEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
            E G+  +FS+SSDG L+FE+ LC P+D AVK ELL +AHSSPFSMH GST+
Sbjct: 468 AEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTE 519

[Close]
BLAST of Cucsa.012530 vs. TrEMBL
Match: E5GCE2_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-20
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1 

Query: 23  HRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKGKKFSISS 82
           H  +A +V     ++ +LAQL+VQPTLRQ+I+  Q   PYL+ KR L E G+  +FSISS
Sbjct: 811 HPGKANVVADA--LSRKLAQLTVQPTLRQKIIDAQSNNPYLVGKRGLAETGQAVEFSISS 870

Query: 83  DGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
           DG L+FE+ L  P+D AVK ELL +AHSSPFSMH GSTK
Sbjct: 871 DGGLLFERRLYVPSDSAVKTELLSEAHSSPFSMHSGSTK 907

[Close]
BLAST of Cucsa.012530 vs. TrEMBL
Match: M5WLY8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 40/106 (37.74%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 16  RQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKG 75
           R +PL     +  I + V    + LA L V+P L +RI+  Q   P +   R  V  G  
Sbjct: 687 RYLPLMVEMRKLRIGLDVDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDR 746

Query: 76  KKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
              S+ +DG LM    L  P D+A+K E+L +AH S F+MH GSTK
Sbjct: 747 TDCSVRNDGALMVGNRLYVPNDEALKREILEEAHESAFAMHPGSTK 792

[Close]
BLAST of Cucsa.012530 vs. TrEMBL
Match: M5XLP5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 16  RQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKG 75
           R +PL     +  + + V    + LA L V+P L +RI+  Q   P +   R  V  G  
Sbjct: 45  RYLPLMVEMRKLRVGLHVDNQGALLATLHVRPVLVERILAAQSQDPLICTLRVEVANGDR 104

Query: 76  KKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
              S+ +DG LM    L  P D+A+K E+L +AH S F+MH GSTK
Sbjct: 105 TDCSVRNDGALMVGNRLYVPNDEALKREILEEAHESAFAMHPGSTK 150

[Close]
BLAST of Cucsa.012530 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.9e-07
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 1 

Query: 11   TALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLV 70
            T L T  +PL     +  + + + +    LA L V+P L +RI+V Q   P L   R  V
Sbjct: 980  THLRTTYLPLLVELRKDGVELEMTQQGGILASLHVRPILVERIIVAQLGDPTLCRIRGEV 1039

Query: 71   EVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
            E G  K ++I  DG L+    L  P +  +K E+L +AH S ++MH GSTK
Sbjct: 1040 ESGSRKDYAIRGDGALVTGTRLHVPKNDYLKREILEEAHCSTYTMHPGSTK 1090

[Close]
BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-32
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1 

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S ALITRQ PLH+  ERAEI V VG VT QLAQL+VQPTLRQRI+  Q   PYL+EKR L
Sbjct: 408 SAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGL 467

Query: 70  VEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
            E G+  +FS+SSDG L+FE+ LC P+D AVK ELL +AHSSPFSMH GST+
Sbjct: 468 AEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGSTE 519

[Close]
BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|659123320|ref|XP_008461603.1| (PREDICTED: uncharacterized protein LOC103500166 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 4.2e-27
Identity = 70/117 (59.83%), Postives = 83/117 (70.94%), Query Frame = 1 

Query: 5   EKYHISTALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLI 64
           +K   S  LIT Q+ LH+  ER EI VS+GEVTSQLAQLS+Q T RQRI+V Q    YL+
Sbjct: 58  KKVSHSPTLITEQVFLHRDFERTEIAVSIGEVTSQLAQLSMQSTFRQRIIVAQLNYLYLV 117

Query: 65  EKRHLVEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
           EK  LVEVG+ ++FSISSD   MFE+ LC   D  VK+ELL KA+SS F MH GSTK
Sbjct: 118 EKHRLVEVGQVEEFSISSDDGFMFERRLCMSADNVVKIELLTKAYSSLFFMHYGSTK 174

[Close]
BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|307136318|gb|ADN34141.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 105.9 bits (263), Expect = 5.0e-20
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1 

Query: 23  HRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHLVEVGKGKKFSISS 82
           H  +A +V     ++ +LAQL+VQPTLRQ+I+  Q   PYL+ KR L E G+  +FSISS
Sbjct: 811 HPGKANVVADA--LSRKLAQLTVQPTLRQKIIDAQSNNPYLVGKRGLAETGQAVEFSISS 870

Query: 83  DGELMFEKGLCEPTDKAVKVELLIKAHSSPFSMHLGSTK 122
           DG L+FE+ L  P+D AVK ELL +AHSSPFSMH GSTK
Sbjct: 871 DGGLLFERRLYVPSDSAVKTELLSEAHSSPFSMHSGSTK 907

[Close]
BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|659114282|ref|XP_008456990.1| (PREDICTED: uncharacterized protein LOC103496779 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S ALIT Q+PLH+  E+ +I VSVGE+TSQLAQL++Q TLRQRI V Q    +L+EK  L
Sbjct: 38  SAALITEQVPLHRDFEKDKIAVSVGEITSQLAQLAMQLTLRQRINVTQLNDLFLVEKHRL 97

Query: 70  VEVGKGKKFSISSDGELMFEKGLCEPTDKAVKVELL 106
            +  + ++FSISSD  LM ++ LC PTD AVK ELL
Sbjct: 98  AKARQDEEFSISSDDGLMLKRQLCVPTDSAVKTELL 133

[Close]
BLAST of Cucsa.012530 vs. NCBI nr
Match: gi|778721994|ref|XP_011658388.1| (PREDICTED: uncharacterized protein LOC105435984 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-19
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1 

Query: 10  STALITRQIPLHKHRERAEIVVSVGEVTSQLAQLSVQPTLRQRIVVVQFIKPYLIEKRHL 69
           S AL+T Q+PLHK  ERAEI V VGEVTS+LAQLSVQPTLRQ+I VVQ   PYL++K  L
Sbjct: 199 SAALVTNQVPLHKVLERAEIAVLVGEVTSKLAQLSVQPTLRQQITVVQHNDPYLVKKSRL 258

Query: 70  VEVGKGKKFSISSDGELMF 89
           VEVG+ K+FS+S D E++F
Sbjct: 259 VEVGQTKEFSMSFDDEIVF 277

The following BLAST results are available for this feature:
BLAST of Cucsa.012530 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84KB0_CUCME6.8e-3266.96Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCE2_CUCME3.5e-2056.57Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
M5WLY8_PRUPE2.0e-0737.74Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1[more]
M5XLP5_PRUPE3.4e-0736.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1[more]
M5VK25_PRUPE9.9e-0736.04Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
BLAST of Cucsa.012530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|28558781|gb|AAO45752.1|9.8e-3266.96pol protein [Cucumis melo subsp. melo][more]
gi|659123320|ref|XP_008461603.1|4.2e-2759.83PREDICTED: uncharacterized protein LOC103500166 [Cucumis melo][more]
gi|307136318|gb|ADN34141.1|5.0e-2056.57ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659114282|ref|XP_008456990.1|1.5e-1957.29PREDICTED: uncharacterized protein LOC103496779 [Cucumis melo][more]
gi|778721994|ref|XP_011658388.1|3.3e-1967.09PREDICTED: uncharacterized protein LOC105435984 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.012530.1Cucsa.012530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.012530Cucurbita pepo (Zucchini)cgycpeB0531
Cucsa.012530Cucurbita pepo (Zucchini)cgycpeB0532
Cucsa.012530Bottle gourd (USVL1VR-Ls)cgylsiB322
Cucsa.012530Melon (DHL92) v3.6.1cgymedB338
Cucsa.012530Silver-seed gourdcarcgyB0859
Cucsa.012530Cucumber (Chinese Long) v3cgycucB303
Cucsa.012530Watermelon (97103) v2cgywmbB351
Cucsa.012530Wax gourdcgywgoB393
Cucsa.012530Cucurbita maxima (Rimu)cgycmaB0548
Cucsa.012530Cucurbita moschata (Rifu)cgycmoB0549
Cucsa.012530Wild cucumber (PI 183967)cgycpiB299
Cucsa.012530Cucumber (Chinese Long) v2cgycuB290
Cucsa.012530Melon (DHL92) v3.5.1cgymeB343
Cucsa.012530Watermelon (Charleston Gray)cgywcgB345
Cucsa.012530Watermelon (97103) v1cgywmB367