Cucsa.012510 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.012510
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00164 : 66923 .. 67296 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACGATTGGGACGGGGCTACCGGTGAGGACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACAGTTGTGTCCGGCTGGGTTTGGACGAAACGGAGAGGAGAAGAGAGGGGAGACAGCCAGCGGCTGGGCTGCGGCGAACGGATCTGGCAACGACGCGGAGACAGAGGTGCGCGGCGCTGGCAGAAGGTCACGCGGCGACTGCTGCAAGGTTGCTTCGCGAACCGGCCGACGGTTGCAGCGGCGGAGACAGAGTAACGGCGGCGGAGAAGAGAGGTCTCGGGGTGGCGGTTGCTGGGCTGCGGCGGCGGTTGCTAGGGTATGGGAGGAGAAGAGAAATCGGGAGTGGGAGGAGAAGAGGAATGGAG

mRNA sequence

ATGGAGACGATTGGGACGGGGCTACCGGTGAGGACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACAGTTGTGTCCGGCTGGGTTTGGACGAAACGGAGAGGAGAAGAGAGGGGAGACAGCCAGCGGCTGGGCTGCGGCGAACGGATCTGGCAACGACGCGGAGACAGAGACAGAGTAACGGCGGCGGAGAAGAGAGGTCTCGGGGTGGCGGTTGCTGGGCTGCGGCGGCGGTTGCTAGGGTATGGGAGGAGAAGAGAAATCGGGAGTGGGAGGAGAAGAGGAATGGAG

Coding sequence (CDS)

ATGGAGACGATTGGGACGGGGCTACCGGTGAGGACCCGGCGTTGCAGATCTGGACAACGGCGCGGTGAGACAGTTGTGTCCGGCTGGGTTTGGACGAAACGGAGAGGAGAAGAGAGGGGAGACAGCCAGCGGCTGGGCTGCGGCGAACGGATCTGGCAACGACGCGGAGACAGAGACAGAGTAACGGCGGCGGAGAAGAGAGGTCTCGGGGTGGCGGTTGCTGGGCTGCGGCGGCGGTTGCTAGGGTATGGGAGGAGAAGAGAAATCGGGAGTGGGAGGAGAAGAGGAATGGAG

Protein sequence

METIGTGLPVRTRRCRSGQRRGETVVSGWVWTKRRGEERGDSQRLGCGERIWQRRGDRDRVTAAEKRGLGVAVAGLRRRLLGYGRRREIGSGRRRGME
Homology
[Close]
BLAST of Cucsa.012510 vs. TrEMBL
Match: A0A0A0LSK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096080 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-14
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 

Query: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTKRRGEER---GDSQ-RLGCGERIWQ 54
          METIGTGLPVRTRRCRSGQRRGETVVSGWVWT++RGE+R   GD+    GC  R W+
Sbjct: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWR 57

[Close]
BLAST of Cucsa.012510 vs. NCBI nr
Match: gi|700209677|gb|KGN64773.1| (hypothetical protein Csa_1G096080 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 

Query: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTKRRGEER---GDSQ-RLGCGERIWQ 54
          METIGTGLPVRTRRCRSGQRRGETVVSGWVWT++RGE+R   GD+    GC  R W+
Sbjct: 1  METIGTGLPVRTRRCRSGQRRGETVVSGWVWTEQRGEKRETAGDADLDDGCERRAWR 57

The following BLAST results are available for this feature:
BLAST of Cucsa.012510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSK8_CUCSA5.1e-1473.68Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096080 PE=4 SV=1[more]
BLAST of Cucsa.012510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209677|gb|KGN64773.1|7.4e-1473.68hypothetical protein Csa_1G096080 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.012510.1Cucsa.012510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.012510Cucurbita pepo (Zucchini)cgycpeB0531
Cucsa.012510Cucurbita pepo (Zucchini)cgycpeB0532
Cucsa.012510Bottle gourd (USVL1VR-Ls)cgylsiB322
Cucsa.012510Melon (DHL92) v3.6.1cgymedB338
Cucsa.012510Silver-seed gourdcarcgyB0859
Cucsa.012510Cucumber (Chinese Long) v3cgycucB303
Cucsa.012510Watermelon (97103) v2cgywmbB351
Cucsa.012510Wax gourdcgywgoB393
Cucsa.012510Cucurbita maxima (Rimu)cgycmaB0548
Cucsa.012510Cucurbita moschata (Rifu)cgycmoB0549
Cucsa.012510Wild cucumber (PI 183967)cgycpiB299
Cucsa.012510Cucumber (Chinese Long) v2cgycuB290
Cucsa.012510Melon (DHL92) v3.5.1cgymeB343
Cucsa.012510Watermelon (Charleston Gray)cgywcgB345
Cucsa.012510Watermelon (97103) v1cgywmB367