Cucsa.012480 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.012480
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00164 : 47564 .. 47943 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGTGGTCGACTGATGTCAATAGCAGATGCAGCGACGGAGCTTCGCGAATCAGGATCGGCGCAGACGAAAATGTTTGGCGCAGAAGAAGACGCGGCGTGACCTGCGCCGGCGAGGCTGTTCGCGAATGAGGCGTGCGGCTCTGCTTCGCGAACAGAGACAGGGATGGCGGCCGGCGACGTCTCTGTTCGCCTGGAGCGGAATGCGACGGTGGCTTCGAATGCGTGAAGACAGTGCGGCGACGGCGCTTCGACTCCTTCACAGTGGAACGTCTGCGGTTCGGACAAGATGGGATTTGTGGCGGTTGGCGTCTGCAAGGAAATAGAGAGGAAGAAGGGAGAAACAGTTAGGGCTTGAGGGAGAAACAGAGAAGAAGAAAAG

mRNA sequence

GGCGTGGTCGACTGATGTCAATAGCAGATGCAGCGACGGAGCTTCGCGAATCAGGATCGGCGCAGACGAAAATGTTTGGCGCAGAAGAAGACGCGGCGTGACCTGCGCCGGCGAGGCTGTTCGCGAATGAGGCGTGCGGCTCTGCTTCGCGAACAGAGACAGGGATGGCGGCCGGCGACGTCTCTGTTCGCCTGGAGCGGAATGCGACGGTGGCTTCGAATGCGTGAAGACAGTGCGGCGACGGCGCTTCGACTCCTTCACAGTGGAACGTCTGCGGTTCGGACAAGATGGGATTTGTGGCGGTTGGCGTCTGCaaggaaatagagaggaagaagggagaaacagttagggcttgagggagaaacagagaagaagaaaag

Coding sequence (CDS)

ATGCAGCGACGGAGCTTCGCGAATCAGGATCGGCGCAGACGAAAATGTTTGGCGCAGAAGAAGACGCGGCGTGACCTGCGCCGGCGAGGCTGTTCGCGAATGAGGCGTGCGGCTCTGCTTCGCGAACAGAGACAGGGATGGCGGCCGGCGACGTCTCTGTTCGCCTGGAGCGGAATGCGACGGTGGCTTCGAATGCGTGAAGACAGTGCGGCGACGGCGCTTCGACTCCTTCACAGTGGAACGTCTGCGGTTCGGACAAGATGGGATTTGTGGCGGTTGGCGTCTGCAAGGAAATAG

Protein sequence

MQRRSFANQDRRRRKCLAQKKTRRDLRRRGCSRMRRAALLREQRQGWRPATSLFAWSGMRRWLRMREDSAATALRLLHSGTSAVRTRWDLWRLASARK*
Homology
[Close]
BLAST of Cucsa.012480 vs. TrEMBL
Match: A0A0A0L765_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G332840 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 3.8e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MQRRSFANQDRRRRKCLAQKKTRRDLRRRGCSRMRRAALLREQRQGWRPATSLFAWSGMR 60
          MQRRSFANQDRRRRKCLAQKKTRRDLRRRGCSRMRRAALLREQRQGWRPATSLFAWSGMR
Sbjct: 1  MQRRSFANQDRRRRKCLAQKKTRRDLRRRGCSRMRRAALLREQRQGWRPATSLFAWSGMR 60

Query: 61 RWLRMREDSAATALRLLHSGTSAVRTRWDLWRLASARK 99
          RWLRMREDSAATALRLLHSGTSAVRTRWDLWRLASARK
Sbjct: 61 RWLRMREDSAATALRLLHSGTSAVRTRWDLWRLASARK 98

[Close]
BLAST of Cucsa.012480 vs. NCBI nr
Match: gi|700202692|gb|KGN57825.1| (hypothetical protein Csa_3G332840 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 5.5e-49
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MQRRSFANQDRRRRKCLAQKKTRRDLRRRGCSRMRRAALLREQRQGWRPATSLFAWSGMR 60
          MQRRSFANQDRRRRKCLAQKKTRRDLRRRGCSRMRRAALLREQRQGWRPATSLFAWSGMR
Sbjct: 1  MQRRSFANQDRRRRKCLAQKKTRRDLRRRGCSRMRRAALLREQRQGWRPATSLFAWSGMR 60

Query: 61 RWLRMREDSAATALRLLHSGTSAVRTRWDLWRLASARK 99
          RWLRMREDSAATALRLLHSGTSAVRTRWDLWRLASARK
Sbjct: 61 RWLRMREDSAATALRLLHSGTSAVRTRWDLWRLASARK 98

The following BLAST results are available for this feature:
BLAST of Cucsa.012480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L765_CUCSA3.8e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G332840 PE=4 SV=1[more]
BLAST of Cucsa.012480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202692|gb|KGN57825.1|5.5e-49100.00hypothetical protein Csa_3G332840 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.012480.1Cucsa.012480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.012480Cucurbita maxima (Rimu)cgycmaB0548
Cucsa.012480Cucurbita moschata (Rifu)cgycmoB0549
Cucsa.012480Wild cucumber (PI 183967)cgycpiB299
Cucsa.012480Cucumber (Chinese Long) v2cgycuB290
Cucsa.012480Watermelon (Charleston Gray)cgywcgB345
Cucsa.012480Watermelon (97103) v1cgywmB367
Cucsa.012480Cucurbita pepo (Zucchini)cgycpeB0531
Cucsa.012480Cucurbita pepo (Zucchini)cgycpeB0532
Cucsa.012480Bottle gourd (USVL1VR-Ls)cgylsiB322
Cucsa.012480Melon (DHL92) v3.6.1cgymedB338
Cucsa.012480Silver-seed gourdcarcgyB0859
Cucsa.012480Cucumber (Chinese Long) v3cgycucB303
Cucsa.012480Watermelon (97103) v2cgywmbB351
Cucsa.012480Wax gourdcgywgoB393