Cucsa.011760 (gene) Cucumber (Gy14) v1

NameCucsa.011760
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionStructural maintenance of chromosomes protein
Locationscaffold00154 : 1073655 .. 1075539 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCCACCGAACCTGTGGATGACCTGATGCCCCAAACCGCGAATTCTACCAATGGAGCTTCCACAACTCCCAGGCTTTTCATTAAGGAAATGGTTTTGTCCAACTTCAAGTCCTACGCTGGTGAACAACGGGTTGGACCCTTCCATAAGGTTGCTCAATCATTTCCATCCTAGGGTTTTTCCAATTTCCTGCTCACAATTCATTTTGTCGAAATACTTCACTTCTCCTTTACTTCAATTTTCTCCATCTACATTTTGTGGTTTCAGAGTTTCTCTGCAGTGGTTGGACCCAATGGCAGTGGAAAAAGTAATGTAATTGATGCCATGTTATTTGTCTTCGGAAAGCGAGCTAAACAGGTAGGTTCGCCTTTTGTTAGAGCTCACAATACGACTTTGGCTGTGGAATATGTTTTCAAATGTAAAGAGTGGAGATTCAGTTTGCGCACTATTTAGTTTACGGCTATTACCTAACTAACCATTTCTACAGTTTCACTTTCGTTTCTACTCAACTTTCTATCTGAGTTTTTAATCTAATCTCAATTGTTGTGCGTTTAGTTGCTCCACTATCCACGAGCCATCTTGTAGCAGTGTATGCTTCAAGAGATTTTCAGGAGTTCTCAACACTTGTCACGGATTGGTTTGTGTTGATTAGGGCACCCTAAACTTGATTTATCATTGGCCTTGTGTTTCCCTCGAAGGAAAAACTCATTGGTTGAGCTGTGCTTCCTGAAATAAAACACTCTAGTTCTTTTCCATGCAGCTCAACCAAGTTCATCGACTTTCTCATTATGTTGTTCCTTTTAATCAACTTCATAGTGAGATATTGGACACCCATTACCCAAGGGATTCAATAGAAGGTGGATTTACTGAAGTGATTGTAGTTGTACTCTTGAGGTTTCAGTTAGGCTTGCGCTTTCCACCAAATTTCTATATGAAAACCATGAAATTATCATGGTTGTAGTTGTAGTCTTGCATGTAGTGGTGTTTGTAAGGTAGCTCAACTTTTCAAGTGCCGTTGTGACGAGTAAATTTTTTTtATACGGGATGAGATTTTAGATAATGAGTGAAAGATGAAGGTGAAACAAGAAGATATCATATACTGAAATGAATGAGTCAATTCTTATTGCTATAAATTGGACATAGTATAGAGGAAAGGGAATAATAATGCATGACTATCATTCTTACATGGAGGCACAGTATACATAAAAATGATATGATCAATACAATGGAATTGAGTTATTAAATTTTCCTTCTTGTTTCTAATAGTAAAAAaTGATTTGCAGATGCGACTCAACAAAGTTTCGGAGCTAATTCATAATTCTACCAATCACCAGAATTTAGAGAGTGCAAGTGTTTCAGTTCACTTCCAAGAAATAGTTGATCTGGTAAATTTTGATCAACAATTCTTTTTTACTATTTAATGTCTGCCATGTTTTCATAAACTGTTATTTTCTTAGAATCAGTAACTCAGTATTATTTATGTTGTTGACTAAATTTGCAGGATGATGGAGCATATGAAGCTGTTCCAGGAAGTGACTTTGTTATAACCCGGGCTGCCTTCCGTGATAACTCTTCTAAATATTACATTAATAATCGTGCAAGTAACTTCACTGAAGTTACCAAAAAaTTGAAGGGTAAAGGAGTTGACTTGGACAACAATCGCTTTTTAATTCTTCAGGTTAGTTCAATAGCTCTGGTTGTATTCTAGTGAAATATTTCTACAAAATTTGTTATATCTTTGGTTTTATTAGGGTGAAGTGGAGCAGATTTCACTGATGAAGCCAAAAGCTCAAGGACCTCATGATGAGGGCTTTCTTGAATATCTTGAGGATATAATCGGAACCATCAAATATGTTGAAATGATTGACGAGTCAAACAAGCA

mRNA sequence

ATGGTTTCCACCGAACCTGTGGATGACCTGATGCCCCAAACCGCGAATTCTACCAATGGAGCTTCCACAACTCCCAGGCTTTTCATTAAGGAAATGGTTTTGTCCAACTTCAAGTCCTACGCTGGTGAACAACGGGTTGGACCCTTCCATAAGAGTTTCTCTGCAGTGGTTGGACCCAATGGCAGTGGAAAAAGTAATGTAATTGATGCCATGTTATTTGTCTTCGGAAAGCGAGCTAAACAGATGCGACTCAACAAAGTTTCGGAGCTAATTCATAATTCTACCAATCACCAGAATTTAGAGAGTGCAAGTGTTTCAGTTCACTTCCAAGAAATAGTTGATCTGGATGATGGAGCATATGAAGCTGTTCCAGGAAGTGACTTTGTTATAACCCGGGCTGCCTTCCGTGATAACTCTTCTAAATATTACATTAATAATCGTGCAAGTAACTTCACTGAAGTTACCAAAAAATTGAAGGGTAAAGGAGTTGACTTGGACAACAATCGCTTTTTAATTCTTCAGGGTGAAGTGGAGCAGATTTCACTGATGAAGCCAAAAGCTCAAGGACCTCATGATGAGGGCTTTCTTGAATATCTTGAGGATATAATCGGAACCATCAAATATGTTGAAATGATTGACGAGTCAAACAAGCA

Coding sequence (CDS)

ATGGTTTCCACCGAACCTGTGGATGACCTGATGCCCCAAACCGCGAATTCTACCAATGGAGCTTCCACAACTCCCAGGCTTTTCATTAAGGAAATGGTTTTGTCCAACTTCAAGTCCTACGCTGGTGAACAACGGGTTGGACCCTTCCATAAGAGTTTCTCTGCAGTGGTTGGACCCAATGGCAGTGGAAAAAGTAATGTAATTGATGCCATGTTATTTGTCTTCGGAAAGCGAGCTAAACAGATGCGACTCAACAAAGTTTCGGAGCTAATTCATAATTCTACCAATCACCAGAATTTAGAGAGTGCAAGTGTTTCAGTTCACTTCCAAGAAATAGTTGATCTGGATGATGGAGCATATGAAGCTGTTCCAGGAAGTGACTTTGTTATAACCCGGGCTGCCTTCCGTGATAACTCTTCTAAATATTACATTAATAATCGTGCAAGTAACTTCACTGAAGTTACCAAAAAaTTGAAGGGTAAAGGAGTTGACTTGGACAACAATCGCTTTTTAATTCTTCAGGGTGAAGTGGAGCAGATTTCACTGATGAAGCCAAAAGCTCAAGGACCTCATGATGAGGGCTTTCTTGAATATCTTGAGGATATAATCGGAACCATCAAATATGTTGAAATGATTGACGAGTCAAACAAGCA

Protein sequence

MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNKX
BLAST of Cucsa.011760 vs. Swiss-Prot
Match: SMC4_ARATH (Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 PE=1 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.2e-96
Identity = 175/196 (89.29%), Postives = 185/196 (94.39%), Query Frame = 1

Query: 22  STTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ 81
           S TPRL+IKE+V+ NFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ
Sbjct: 19  SGTPRLYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ 78

Query: 82  MRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAFRDNSSK 141
           MRLNKVSELIHNSTNHQNL+SA VSV F+EI+DL++G YE VPGSDF+ITR AFRDNSSK
Sbjct: 79  MRLNKVSELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSK 138

Query: 142 YYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED 201
           YYIN R+SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED
Sbjct: 139 YYINERSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED 198

Query: 202 IIGTIKYVEMIDESNK 218
           IIGT KYVE IDE NK
Sbjct: 199 IIGTNKYVEKIDELNK 214

BLAST of Cucsa.011760 vs. Swiss-Prot
Match: SMC4_DICDI (Structural maintenance of chromosomes protein 4 OS=Dictyostelium discoideum GN=smc4 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-65
Identity = 131/208 (62.98%), Postives = 158/208 (75.96%), Query Frame = 1

Query: 16  NSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVF 75
           +S NG     RL I +MV+ NFKSYAG Q VGPFHK FS+VVGPNGSGKSNVIDAMLFVF
Sbjct: 149 SSNNGIEK--RLMITKMVMENFKSYAGAQEVGPFHKCFSSVVGPNGSGKSNVIDAMLFVF 208

Query: 76  GKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDL-DDGAYEAVPGSDFVITRAA 135
           G RAKQ+RLNK+SELIHNS NH+NL +  VSVHFQEI+DL  +  YE V GS+FV+TR A
Sbjct: 209 GYRAKQIRLNKISELIHNSENHKNLTNGRVSVHFQEIIDLPGEDNYEVVKGSEFVVTRTA 268

Query: 136 -----FRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQG 195
                 +D  SKYY+N++     ++   LK KG+DLDNNRFLILQGEVEQI++MKPK   
Sbjct: 269 QKTGNNKDGVSKYYLNDKVVKLDDLKTILKDKGIDLDNNRFLILQGEVEQIAMMKPKGVH 328

Query: 196 PHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           P +EG LEYLEDIIG+ KY+  I+ ++K
Sbjct: 329 PGEEGLLEYLEDIIGSKKYLPDIEATSK 354

BLAST of Cucsa.011760 vs. Swiss-Prot
Match: SMC4_YEAST (Structural maintenance of chromosomes protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMC4 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.1e-61
Identity = 122/192 (63.54%), Postives = 149/192 (77.60%), Query Frame = 1

Query: 26  RLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLN 85
           RLFI E+VL NFKSYAG+Q VGPFH SFSAVVGPNGSGKSNVID+MLFVFG RA +MR +
Sbjct: 153 RLFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQD 212

Query: 86  KVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY---EAVPGSDFVITRAAFRDNSSKY 145
           ++S+LIH S    +L+S SV+VHFQ ++D   G     E  PG   +ITR AF++NSSKY
Sbjct: 213 RLSDLIHKSEAFPSLQSCSVAVHFQYVIDESSGTSRIDEEKPG--LIITRKAFKNNSSKY 272

Query: 146 YINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDI 205
           YIN + S++TEVTK LK +G+DLD+ RFLILQGEVE I+ MKPKA+   D+G LEYLEDI
Sbjct: 273 YINEKESSYTEVTKLLKNEGIDLDHKRFLILQGEVENIAQMKPKAEKESDDGLLEYLEDI 332

Query: 206 IGTIKYVEMIDE 215
           IGT  Y  +I+E
Sbjct: 333 IGTANYKPLIEE 342

BLAST of Cucsa.011760 vs. Swiss-Prot
Match: SMC4_XENLA (Structural maintenance of chromosomes protein 4 OS=Xenopus laevis GN=smc4 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 8.9e-60
Identity = 113/201 (56.22%), Postives = 150/201 (74.63%), Query Frame = 1

Query: 12  PQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAM 71
           P     TN A   PRL I  +V  NFKSYAGE+ +GPFHK FS ++GPNGSGKSNVID+M
Sbjct: 62  PPPPAMTNEAGA-PRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSM 121

Query: 72  LFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVIT 131
           LFVFG RA+++R  K+S LIHNS  H++++S +V VHFQ+I+D +   +E +P S+F ++
Sbjct: 122 LFVFGYRAQKIRSKKLSVLIHNSDEHKDVQSCTVEVHFQKIIDKEGDDFEVIPNSNFYVS 181

Query: 132 RAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPH 191
           R A++DNSS Y+I+ + + F +V   L+  G+DLD+NRFLILQGEVEQI++MKPK Q  H
Sbjct: 182 RTAYKDNSSVYHISGKKATFKDVGLLLRSHGIDLDHNRFLILQGEVEQIAMMKPKGQTEH 241

Query: 192 DEGFLEYLEDIIGTIKYVEMI 213
           DEG LEYLEDIIG+ +  E I
Sbjct: 242 DEGMLEYLEDIIGSERLKEPI 261

BLAST of Cucsa.011760 vs. Swiss-Prot
Match: SMC4_HUMAN (Structural maintenance of chromosomes protein 4 OS=Homo sapiens GN=SMC4 PE=1 SV=2)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-59
Identity = 110/200 (55.00%), Postives = 147/200 (73.50%), Query Frame = 1

Query: 5   EPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGK 64
           E ++ + P    +    +  PRL I  +V  NFKSYAGE+ +GPFHK FS ++GPNGSGK
Sbjct: 60  EILNSIPPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGK 119

Query: 65  SNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVP 124
           SNVID+MLFVFG RA+++R  K+S LIHNS  H++++S +V VHFQ+I+D +   YE +P
Sbjct: 120 SNVIDSMLFVFGYRAQKIRSKKLSVLIHNSDEHKDIQSCTVEVHFQKIIDKEGDDYEVIP 179

Query: 125 GSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMK 184
            S+F ++R A RDN+S Y+I+ +   F +V   L+  G+DLD+NRFLILQGEVEQI++MK
Sbjct: 180 NSNFYVSRTACRDNTSVYHISGKKKTFKDVGNLLRSHGIDLDHNRFLILQGEVEQIAMMK 239

Query: 185 PKAQGPHDEGFLEYLEDIIG 205
           PK Q  HDEG LEYLEDIIG
Sbjct: 240 PKGQTEHDEGMLEYLEDIIG 259

BLAST of Cucsa.011760 vs. TrEMBL
Match: A0A0A0KP68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G532470 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.1e-117
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1

Query: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60
           MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN
Sbjct: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60

Query: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120
           GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY
Sbjct: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120

Query: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180
           EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI
Sbjct: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180

Query: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK
Sbjct: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 217

BLAST of Cucsa.011760 vs. TrEMBL
Match: A0A068U3R5_COFCA (Structural maintenance of chromosomes protein OS=Coffea canephora GN=GSCOC_T00039567001 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.6e-100
Identity = 188/217 (86.64%), Postives = 197/217 (90.78%), Query Frame = 1

Query: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60
           M S  P D++    ++ST   S TPRLFIKEMV+ +FKSYAGEQRVGPFHKSFSAVVGPN
Sbjct: 1   MESAAPDDEVAGTGSHSTQMGSRTPRLFIKEMVMRDFKSYAGEQRVGPFHKSFSAVVGPN 60

Query: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120
           GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNL+SA VSVHFQEI+DLDDG Y
Sbjct: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIIDLDDGTY 120

Query: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180
           EAVPGSDFVITR AFRDNSSKYYIN+R SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI
Sbjct: 121 EAVPGSDFVITRVAFRDNSSKYYINDRGSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180

Query: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           SLMKPKAQGPHDEGFLEYLEDIIGT KYVE IDES K
Sbjct: 181 SLMKPKAQGPHDEGFLEYLEDIIGTNKYVEKIDESLK 217

BLAST of Cucsa.011760 vs. TrEMBL
Match: A0A151RK13_CAJCA (Structural maintenance of chromosomes protein 4 (Fragment) OS=Cajanus cajan GN=KK1_035663 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.4e-99
Identity = 186/212 (87.74%), Postives = 193/212 (91.04%), Query Frame = 1

Query: 6   PVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKS 65
           P+D       +S    S+ PRLFIKEMV+ NFKSYAGEQRVGPFHKSFSAVVGPNGSGKS
Sbjct: 1   PMDPHAESAPDSATRGSSRPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKS 60

Query: 66  NVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPG 125
           NVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNL+SA VSVHFQEIVDLDDG YEAVPG
Sbjct: 61  NVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIVDLDDGTYEAVPG 120

Query: 126 SDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 185
           SDFVITR AFRDNSSKYYIN+R SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP
Sbjct: 121 SDFVITRVAFRDNSSKYYINDRTSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKP 180

Query: 186 KAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           KAQGPHDEGFLEYLEDIIGT KYVE IDES+K
Sbjct: 181 KAQGPHDEGFLEYLEDIIGTNKYVEKIDESHK 212

BLAST of Cucsa.011760 vs. TrEMBL
Match: D7SXB5_VITVI (Structural maintenance of chromosomes protein OS=Vitis vinifera GN=VIT_14s0108g00710 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.0e-99
Identity = 185/214 (86.45%), Postives = 196/214 (91.59%), Query Frame = 1

Query: 4   TEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSG 63
           T+P ++ +   ++S  G S  PRLFIKEMV+ NFKSYAGEQRVGPFHKSFSAVVGPNGSG
Sbjct: 5   TKPPEESVSNGSDSGPGRSRAPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSG 64

Query: 64  KSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAV 123
           KSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNL+SA VSVHFQEIVDLDDG YEAV
Sbjct: 65  KSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIVDLDDGTYEAV 124

Query: 124 PGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLM 183
           PGSDFVI R AF+DNSSKYYIN+R SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLM
Sbjct: 125 PGSDFVIARVAFQDNSSKYYINDRPSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLM 184

Query: 184 KPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           KPKAQGPHDEGFLEYLEDIIGT KYVE IDES+K
Sbjct: 185 KPKAQGPHDEGFLEYLEDIIGTNKYVEKIDESHK 218

BLAST of Cucsa.011760 vs. TrEMBL
Match: V7C2X7_PHAVU (Structural maintenance of chromosomes protein OS=Phaseolus vulgaris GN=PHAVU_004G029000g PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-98
Identity = 183/202 (90.59%), Postives = 190/202 (94.06%), Query Frame = 1

Query: 16  NSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVF 75
           ++T   S  PRLFIKEM++ NFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVF
Sbjct: 11  SATRHRSARPRLFIKEMIMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVF 70

Query: 76  GKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAF 135
           GKRAKQMRLNKVSELIHNSTNHQNLESA VSVHFQEIVDL+DG YEAVPGSDFVITR AF
Sbjct: 71  GKRAKQMRLNKVSELIHNSTNHQNLESAGVSVHFQEIVDLEDGTYEAVPGSDFVITRVAF 130

Query: 136 RDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGF 195
           RDNSSKYYIN+RASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK+QGPHDEGF
Sbjct: 131 RDNSSKYYINDRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKSQGPHDEGF 190

Query: 196 LEYLEDIIGTIKYVEMIDESNK 218
           LEYLEDIIGT KYVE IDES K
Sbjct: 191 LEYLEDIIGTNKYVEKIDESQK 212

BLAST of Cucsa.011760 vs. TAIR10
Match: AT5G48600.2 (AT5G48600.2 structural maintenance of chromosome 3)

HSP 1 Score: 354.0 bits (907), Expect = 6.7e-98
Identity = 175/196 (89.29%), Postives = 185/196 (94.39%), Query Frame = 1

Query: 22  STTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ 81
           S TPRL+IKE+V+ NFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ
Sbjct: 19  SGTPRLYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQ 78

Query: 82  MRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAFRDNSSK 141
           MRLNKVSELIHNSTNHQNL+SA VSV F+EI+DL++G YE VPGSDF+ITR AFRDNSSK
Sbjct: 79  MRLNKVSELIHNSTNHQNLDSAGVSVQFEEIIDLENGLYETVPGSDFMITRVAFRDNSSK 138

Query: 142 YYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED 201
           YYIN R+SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED
Sbjct: 139 YYINERSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLED 198

Query: 202 IIGTIKYVEMIDESNK 218
           IIGT KYVE IDE NK
Sbjct: 199 IIGTNKYVEKIDELNK 214

BLAST of Cucsa.011760 vs. TAIR10
Match: AT3G54670.3 (AT3G54670.3 Structural maintenance of chromosomes (SMC) family protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.4e-23
Identity = 61/166 (36.75%), Postives = 94/166 (56.63%), Query Frame = 1

Query: 21  ASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAK 80
           A  +P   I ++ + NFKSY G Q VGPF K F+A++GPNGSGKSN++DA+ FV G R  
Sbjct: 3   AIQSPSGKILQLEMENFKSYKGHQLVGPF-KDFTAIIGPNGSGKSNLMDAISFVLGVRTG 62

Query: 81  QMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAFRDNSS 140
           Q+R +++ +LI+ + + ++ E        + +  +DDG        +   TR+      S
Sbjct: 63  QLRGSQLKDLIY-AFDDRDKEQRGRKAFVRLVYQMDDGV-------ELRFTRSITSAGGS 122

Query: 141 KYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPK 187
           +Y I+NR  N  E   KL+  G+ +    FL+ QG+VE I+   PK
Sbjct: 123 EYRIDNRVVNLDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPK 159

BLAST of Cucsa.011760 vs. TAIR10
Match: AT5G62410.1 (AT5G62410.1 structural maintenance of chromosomes 2)

HSP 1 Score: 84.7 bits (208), Expect = 7.5e-17
Identity = 59/184 (32.07%), Postives = 90/184 (48.91%), Query Frame = 1

Query: 27  LFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFG-KRAKQMRLN 86
           + IKE+ L  FKSYA    V  F   F+A+ G NGSGKSN++D++ FV G    +Q+R  
Sbjct: 1   MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 87  KVSELIHNSTNHQNLESASVSVHFQEIV-DLDDGAYEAVPGSDFVITRAAFRDNSSKYYI 146
            + EL++       +  A+VSV F           YE  P  +  +TR       +KY I
Sbjct: 61  NLQELVYKQ-GQAGITKATVSVTFDNSERHRSPLGYEEHP--EITVTRQIVVGGRNKYLI 120

Query: 147 NNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIG 206
           N + +  ++V        ++++N  FLI+QG + ++  MKP          L  LE+  G
Sbjct: 121 NGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE-------ILSMLEEAAG 174

Query: 207 TIKY 209
           T  Y
Sbjct: 181 TRMY 174

BLAST of Cucsa.011760 vs. TAIR10
Match: AT3G47460.1 (AT3G47460.1 Structural maintenance of chromosomes (SMC) family protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-16
Identity = 57/183 (31.15%), Postives = 89/183 (48.63%), Query Frame = 1

Query: 27  LFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFG-KRAKQMRLN 86
           + IKE+ L  FKSYA    V  F   F+A+ G NGSGKSN++D++ FV G    +Q+R  
Sbjct: 1   MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 87  KVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEAVPGSDFVITRAAFRDNSSKYYIN 146
            + EL++       +  A+VSV F    + +         S+  +TR       +KY IN
Sbjct: 61  NLQELVYKQ-GQAGITRATVSVTFDN-SERNRSPLGHEDHSEITVTRQIVVGGKNKYLIN 120

Query: 147 NRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGT 206
            + +   +V        ++++N  FLI+QG + ++  MKP          L  LE+  GT
Sbjct: 121 GKLAQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPME-------ILSMLEEAAGT 174

Query: 207 IKY 209
             Y
Sbjct: 181 RMY 174

BLAST of Cucsa.011760 vs. NCBI nr
Match: gi|778703815|ref|XP_011655432.1| (PREDICTED: structural maintenance of chromosomes protein 4 [Cucumis sativus])

HSP 1 Score: 430.6 bits (1106), Expect = 1.6e-117
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1

Query: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60
           MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN
Sbjct: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60

Query: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120
           GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY
Sbjct: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120

Query: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180
           EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI
Sbjct: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180

Query: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK
Sbjct: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 217

BLAST of Cucsa.011760 vs. NCBI nr
Match: gi|700196238|gb|KGN51415.1| (hypothetical protein Csa_5G532470 [Cucumis sativus])

HSP 1 Score: 430.6 bits (1106), Expect = 1.6e-117
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1

Query: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60
           MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN
Sbjct: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60

Query: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120
           GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY
Sbjct: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120

Query: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180
           EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI
Sbjct: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180

Query: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK
Sbjct: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 217

BLAST of Cucsa.011760 vs. NCBI nr
Match: gi|659121263|ref|XP_008460572.1| (PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 4 [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 9.0e-113
Identity = 209/217 (96.31%), Postives = 212/217 (97.70%), Query Frame = 1

Query: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60
           MVS+EPVDDLM +T +S NGAS  PRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN
Sbjct: 1   MVSSEPVDDLMAETVDSINGASRAPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60

Query: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120
           GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY
Sbjct: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120

Query: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180
           EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI
Sbjct: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180

Query: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK
Sbjct: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 217

BLAST of Cucsa.011760 vs. NCBI nr
Match: gi|661893792|emb|CDP02233.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 372.5 bits (955), Expect = 5.1e-100
Identity = 188/217 (86.64%), Postives = 197/217 (90.78%), Query Frame = 1

Query: 1   MVSTEPVDDLMPQTANSTNGASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPN 60
           M S  P D++    ++ST   S TPRLFIKEMV+ +FKSYAGEQRVGPFHKSFSAVVGPN
Sbjct: 1   MESAAPDDEVAGTGSHSTQMGSRTPRLFIKEMVMRDFKSYAGEQRVGPFHKSFSAVVGPN 60

Query: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAY 120
           GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNL+SA VSVHFQEI+DLDDG Y
Sbjct: 61  GSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIIDLDDGTY 120

Query: 121 EAVPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180
           EAVPGSDFVITR AFRDNSSKYYIN+R SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI
Sbjct: 121 EAVPGSDFVITRVAFRDNSSKYYINDRGSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQI 180

Query: 181 SLMKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           SLMKPKAQGPHDEGFLEYLEDIIGT KYVE IDES K
Sbjct: 181 SLMKPKAQGPHDEGFLEYLEDIIGTNKYVEKIDESLK 217

BLAST of Cucsa.011760 vs. NCBI nr
Match: gi|802715260|ref|XP_012084705.1| (PREDICTED: structural maintenance of chromosomes protein 4 [Jatropha curcas])

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 188/215 (87.44%), Postives = 197/215 (91.63%), Query Frame = 1

Query: 5   EPVDDLMPQTANSTN--GASTTPRLFIKEMVLSNFKSYAGEQRVGPFHKSFSAVVGPNGS 64
           E  D+ M   +NS    G+S  PRLFIKEMV+ NFKSYAGEQRVGPFHKSFSAVVGPNGS
Sbjct: 4   ESADEFMASESNSVRAAGSSRGPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGS 63

Query: 65  GKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLESASVSVHFQEIVDLDDGAYEA 124
           GKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNL+SA VSVHFQEIVDLDDG YEA
Sbjct: 64  GKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIVDLDDGNYEA 123

Query: 125 VPGSDFVITRAAFRDNSSKYYINNRASNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISL 184
           VPGSDFVITR AFRDNSSKYYIN+R+SNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISL
Sbjct: 124 VPGSDFVITRVAFRDNSSKYYINDRSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISL 183

Query: 185 MKPKAQGPHDEGFLEYLEDIIGTIKYVEMIDESNK 218
           MKPKAQGPHDEGFLEYLEDIIGT KYVE I+ES+K
Sbjct: 184 MKPKAQGPHDEGFLEYLEDIIGTDKYVEKIEESSK 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SMC4_ARATH1.2e-9689.29Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 ... [more]
SMC4_DICDI1.4e-6562.98Structural maintenance of chromosomes protein 4 OS=Dictyostelium discoideum GN=s... [more]
SMC4_YEAST2.1e-6163.54Structural maintenance of chromosomes protein 4 OS=Saccharomyces cerevisiae (str... [more]
SMC4_XENLA8.9e-6056.22Structural maintenance of chromosomes protein 4 OS=Xenopus laevis GN=smc4 PE=1 S... [more]
SMC4_HUMAN1.2e-5955.00Structural maintenance of chromosomes protein 4 OS=Homo sapiens GN=SMC4 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0KP68_CUCSA1.1e-117100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G532470 PE=4 SV=1[more]
A0A068U3R5_COFCA3.6e-10086.64Structural maintenance of chromosomes protein OS=Coffea canephora GN=GSCOC_T0003... [more]
A0A151RK13_CAJCA1.4e-9987.74Structural maintenance of chromosomes protein 4 (Fragment) OS=Cajanus cajan GN=K... [more]
D7SXB5_VITVI3.0e-9986.45Structural maintenance of chromosomes protein OS=Vitis vinifera GN=VIT_14s0108g0... [more]
V7C2X7_PHAVU1.5e-9890.59Structural maintenance of chromosomes protein OS=Phaseolus vulgaris GN=PHAVU_004... [more]
Match NameE-valueIdentityDescription
AT5G48600.26.7e-9889.29 structural maintenance of chromosome 3[more]
AT3G54670.35.4e-2336.75 Structural maintenance of chromosomes (SMC) family protein[more]
AT5G62410.17.5e-1732.07 structural maintenance of chromosomes 2[more]
AT3G47460.11.7e-1631.15 Structural maintenance of chromosomes (SMC) family protein[more]
Match NameE-valueIdentityDescription
gi|778703815|ref|XP_011655432.1|1.6e-117100.00PREDICTED: structural maintenance of chromosomes protein 4 [Cucumis sativus][more]
gi|700196238|gb|KGN51415.1|1.6e-117100.00hypothetical protein Csa_5G532470 [Cucumis sativus][more]
gi|659121263|ref|XP_008460572.1|9.0e-11396.31PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 4 ... [more]
gi|661893792|emb|CDP02233.1|5.1e-10086.64unnamed protein product [Coffea canephora][more]
gi|802715260|ref|XP_012084705.1|1.1e-9987.44PREDICTED: structural maintenance of chromosomes protein 4 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051276 chromosome organization
cellular_component GO:0005694 chromosome
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.011760.1Cucsa.011760.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 28..164
score: 6.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 29..187
score: 1.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 28..217
score: 5.1
NoneNo IPR availablePANTHERPTHR18937STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERcoord: 9..217
score: 6.1E
NoneNo IPR availablePANTHERPTHR18937:SF231STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEINcoord: 9..217
score: 6.1E