Cucsa.011750 (gene) Cucumber (Gy14) v1

NameCucsa.011750
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptiontapetum determinant 1
Locationscaffold00154 : 1072416 .. 1072719 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTAAGTCAAGCAAAAGGGGTGAGAATGTTCAATGGAATCCCAACATATACGGTGCAGATAACAAACCAATGTTCGAGCAATTGCATTATATACGATCTCCATCTCAAATGTGAATCCTTCAACTCTTCTAACTTAATAAATCCTCGCATCTTCAAGAGACTTGCGGTCGATGATTGTCTTGTCAACAATGGATTGTCAATTGGCTATGGAGAAACCCTTTCCTTTCAATATGCTACTACCTTTATGTTCCCTCTTTCGATTTCCTCGTTTAAATGTAAAAATCTTATCATCCAAGTTTAA

mRNA sequence

AAAATTAAGTCAAGCAAAAGGGGTGAGAATGTTCAATGGAATCCCAACATATACGGTGCAGATAACAAACCAATGTTCGAGCAATTGCATTATATACGATCTCCATCTCAAATGTGAATCCTTCAACTCTTCTAACTTAATAAATCCTCGCATCTTCAAGAGACTTGCGGTCGATGATTGTCTTGTCAACAATGGATTGTCAATTGGCTATGGAGAAACCCTTTCCTTTCAATATGCTACTACCTTTATGTTCCCTCTTTCGATTTCCTCGTTTAAATGTAAAAATCTTATCATCCAAGTTTAA

Coding sequence (CDS)

AAAATTAAGTCAAGCAAAAGGGGTGAGAATGTTCAATGGAATCCCAACATATACGGTGCAGATAACAAACCAATGTTCGAGCAATTGCATTATATACGATCTCCATCTCAAATGTGAATCCTTCAACTCTTCTAACTTAATAAATCCTCGCATCTTCAAGAGACTTGCGGTCGATGATTGTCTTGTCAACAATGGATTGTCAATTGGCTATGGAGAAACCCTTTCCTTTCAATATGCTACTACCTTTATGTTCCCTCTTTCGATTTCCTCGTTTAAATGTAAAAATCTTATCATCCAAGTTTAA

Protein sequence

KLSQAKGVRMFNGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYGETLSFQYATTFMFPLSISSFKCKNLIIQV*
BLAST of Cucsa.011750 vs. Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-22
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1

Query: 2   LSQAKGVRMFNGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCL 61
           ++QA    M NGIP Y V+ITNQC S CII  +H+ C  F+S+ LINPR+FKR+  DDCL
Sbjct: 84  VNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCL 143

Query: 62  VNNGLSIGYGETLSFQYATTFMFPLSISSFKC 94
           VNNG  + +G TLSF YA TF + LS++   C
Sbjct: 144 VNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

BLAST of Cucsa.011750 vs. Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-21
Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 12  NGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYG 71
           +G+P+YTV+I N C S+C I ++H+ C  F+S  L+NPR+F+RL  DDCLVN+G  +G G
Sbjct: 97  SGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPG 156

Query: 72  ETLSFQYATTFMFPLSISSFKC 94
           ++LSFQYA +F +PLS++S  C
Sbjct: 157 QSLSFQYANSFSYPLSVASVSC 178

BLAST of Cucsa.011750 vs. Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-16
Identity = 35/83 (42.17%), Postives = 59/83 (71.08%), Query Frame = 1

Query: 12  NGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYG 71
           +GIPTY+V+I N C++ C +YD+H+ C  F S+ L++P  F+R+  +DCLV  G  +G  
Sbjct: 88  SGIPTYSVEIINVCTA-CTVYDVHISCGEFASAELVDPSQFQRIGFNDCLVKGGGRLGPS 147

Query: 72  ETLSFQYATTFMFPLSISSFKCK 95
           E +SFQY+ +F +PL++++  C+
Sbjct: 148 EAVSFQYSNSFAYPLAVANVACE 169

BLAST of Cucsa.011750 vs. Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 1

Query: 4   QAKGVRMFNGIPTYTVQITNQCSSN------CIIYDLHLKCESFNSSNLINPRIFKRLAV 63
           Q +   + +G+P YTV + N+C+        C I  +H++C  F+S +L++PR+F+RL  
Sbjct: 124 QGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVFRRLGH 183

Query: 64  DDCLVNNGLSIGYGETLSFQYATTFMFPLSISSFKC 94
           DDCL+N+G  +  GET+SF+Y  +F + LS+S   C
Sbjct: 184 DDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

BLAST of Cucsa.011750 vs. TrEMBL
Match: A0A0A0KL27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511090 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-22
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 1

Query: 13  GIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYGE 72
           GIPTY VQI N C+S+C I ++H+KC  F+S+ L+NPRIFKR++ DDCLVN+G ++G G 
Sbjct: 82  GIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGR 141

Query: 73  TLSFQYATTFMFPLSISSFKCKN 96
           TLSFQYA TF +PLS+SS  C +
Sbjct: 142 TLSFQYANTFPYPLSVSSATCSS 164

BLAST of Cucsa.011750 vs. TrEMBL
Match: A0A0A0LUG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.9e-22
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1

Query: 2   LSQAKGVRMFNGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCL 61
           ++Q     +  GIPTYTV++ N C + C IY +H KC  F+S++LINPR+FKRL  DDCL
Sbjct: 90  INQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCL 149

Query: 62  VNNGLSIGYGETLSFQYATTFMFPLSISSFKC 94
           VN+G  + YG TLSFQYA T+ +PLS+SS  C
Sbjct: 150 VNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 181

BLAST of Cucsa.011750 vs. TrEMBL
Match: B9HD45_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s01860g PE=4 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1

Query: 12  NGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYG 71
           NGIP+YTVQI N C S C I ++H+ C  F+S+ LINP +F+R+  DDCLVN+G  +G G
Sbjct: 20  NGIPSYTVQILNVCVSGCSISNIHVSCGWFSSAKLINPSVFRRIYYDDCLVNDGEPLGPG 79

Query: 72  ETLSFQYATTFMFPLSISSFKCKNLIIQ 100
           ETLSFQYA +F++PLS+SS  C  +I Q
Sbjct: 80  ETLSFQYANSFLYPLSVSSVACYEVIDQ 107

BLAST of Cucsa.011750 vs. TrEMBL
Match: V4MEA8_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027160mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 1

Query: 10  MFNGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIG 69
           M NGIP Y V+ITNQC S C I  +H+ C  F+S+ LINPR+FKR+  DDCLVNNG  + 
Sbjct: 31  MPNGIPGYRVEITNQCMSGCKISRIHISCGWFSSAKLINPRLFKRIHYDDCLVNNGKPLP 90

Query: 70  YGETLSFQYATTFMFPLSISSFKC 94
           YG TLSFQYA TF +PLS+S   C
Sbjct: 91  YGSTLSFQYANTFPYPLSVSFVTC 114

BLAST of Cucsa.011750 vs. TrEMBL
Match: M0TTT4_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-21
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 12  NGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYG 71
           NGIPTYTVQI N C + C + D+H++C  F+S+ LINP +F+RL  DDCLVN+G ++  G
Sbjct: 42  NGIPTYTVQILNACPTRCSVADIHVRCGWFSSARLINPLLFRRLRFDDCLVNDGAALASG 101

Query: 72  ETLSFQYATTFMFPLSISSFKC 94
           E+LSFQYA T+ +PLS+SS  C
Sbjct: 102 ESLSFQYANTYRYPLSVSSVAC 123

BLAST of Cucsa.011750 vs. TAIR10
Match: AT4G24972.1 (AT4G24972.1 tapetum determinant 1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-23
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1

Query: 2   LSQAKGVRMFNGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCL 61
           ++QA    M NGIP Y V+ITNQC S CII  +H+ C  F+S+ LINPR+FKR+  DDCL
Sbjct: 84  VNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCL 143

Query: 62  VNNGLSIGYGETLSFQYATTFMFPLSISSFKC 94
           VNNG  + +G TLSF YA TF + LS++   C
Sbjct: 144 VNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

BLAST of Cucsa.011750 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 102.8 bits (255), Expect = 1.2e-22
Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 12  NGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYG 71
           +G+P+YTV+I N C S+C I ++H+ C  F+S  L+NPR+F+RL  DDCLVN+G  +G G
Sbjct: 97  SGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPG 156

Query: 72  ETLSFQYATTFMFPLSISSFKC 94
           ++LSFQYA +F +PLS++S  C
Sbjct: 157 QSLSFQYANSFSYPLSVASVSC 178

BLAST of Cucsa.011750 vs. TAIR10
Match: AT1G05835.1 (AT1G05835.1 PHD finger protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.3e-07
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 1

Query: 17  YTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLA--VDDCLVNNGLSIGYGETL 76
           + V++ N+C   C I +L LKC+ F  S L++P   + L+    +C+VN+GL +   +TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 77  SFQYATTFMF---PLSISSFKCK 95
           SF Y+ T  F   PLS  SF+C+
Sbjct: 108 SFNYSNTHQFALRPLS-WSFQCE 127

BLAST of Cucsa.011750 vs. NCBI nr
Match: gi|449434404|ref|XP_004134986.1| (PREDICTED: TPD1 protein homolog 1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-22
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 1

Query: 13  GIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYGE 72
           GIPTY VQI N C+S+C I ++H+KC  F+S+ L+NPRIFKR++ DDCLVN+G ++G G 
Sbjct: 82  GIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGR 141

Query: 73  TLSFQYATTFMFPLSISSFKCKN 96
           TLSFQYA TF +PLS+SS  C +
Sbjct: 142 TLSFQYANTFPYPLSVSSATCSS 164

BLAST of Cucsa.011750 vs. NCBI nr
Match: gi|778720136|ref|XP_011658115.1| (PREDICTED: TPD1 protein homolog 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-22
Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 1

Query: 13  GIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYGE 72
           GIPTY VQI N C+S+C I ++H+KC  F+S+ L+NPRIFKR++ DDCLVN+G ++G G 
Sbjct: 80  GIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGR 139

Query: 73  TLSFQYATTFMFPLSISSFKCKN 96
           TLSFQYA TF +PLS+SS  C +
Sbjct: 140 TLSFQYANTFPYPLSVSSATCSS 162

BLAST of Cucsa.011750 vs. NCBI nr
Match: gi|659079120|ref|XP_008440086.1| (PREDICTED: uncharacterized protein LOC103484668 isoform X2 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1

Query: 13  GIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYGE 72
           GIPTY VQI N C+S+C I ++H+KC  F+S+ L+NPRIFKR++ DDCLVN+G ++G G 
Sbjct: 80  GIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGR 139

Query: 73  TLSFQYATTFMFPLSISSFKC 94
           TLSFQYA TF +PLS+SS  C
Sbjct: 140 TLSFQYANTFPYPLSVSSATC 160

BLAST of Cucsa.011750 vs. NCBI nr
Match: gi|659079118|ref|XP_008440085.1| (PREDICTED: uncharacterized protein LOC103484668 isoform X1 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 4.4e-22
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1

Query: 13  GIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYGE 72
           GIPTY VQI N C+S+C I ++H+KC  F+S+ L+NPRIFKR++ DDCLVN+G ++G G 
Sbjct: 82  GIPTYIVQILNSCASDCSISNIHVKCGWFSSARLVNPRIFKRVSYDDCLVNDGRALGPGR 141

Query: 73  TLSFQYATTFMFPLSISSFKC 94
           TLSFQYA TF +PLS+SS  C
Sbjct: 142 TLSFQYANTFPYPLSVSSATC 162

BLAST of Cucsa.011750 vs. NCBI nr
Match: gi|694310334|ref|XP_009352447.1| (PREDICTED: uncharacterized protein LOC103943808 [Pyrus x bretschneideri])

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-22
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1

Query: 12  NGIPTYTVQITNQCSSNCIIYDLHLKCESFNSSNLINPRIFKRLAVDDCLVNNGLSIGYG 71
           NGIPTYTVQI N C S C I D+H++C  F+S+ L+NPR+F+R   DDCLVN+G ++G G
Sbjct: 104 NGIPTYTVQILNACVSGCSISDIHVRCGWFSSARLVNPRVFRRNDYDDCLVNDGEALGPG 163

Query: 72  ETLSFQYATTFMFPLSISSFKC 94
           ETLSFQYA +F +PLS+SS  C
Sbjct: 164 ETLSFQYANSFRYPLSVSSVVC 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TPD1_ARATH2.0e-2254.35Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1[more]
TDL1_ARATH2.2e-2152.44TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1[more]
TDL1B_ORYSJ2.8e-1642.17TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1[more]
TDL1A_ORYSJ1.4e-1538.54TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KL27_CUCSA2.4e-2260.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511090 PE=4 SV=1[more]
A0A0A0LUG9_CUCSA6.9e-2254.35Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1[more]
B9HD45_POPTR1.5e-2156.82Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s01860g P... [more]
V4MEA8_EUTSA1.5e-2160.71Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10027160mg P... [more]
M0TTT4_MUSAM2.6e-2157.32Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24972.11.1e-2354.35 tapetum determinant 1[more]
AT1G32583.11.2e-2252.44 FUNCTIONS IN: molecular_function unknown[more]
AT1G05835.17.3e-0738.55 PHD finger protein[more]
Match NameE-valueIdentityDescription
gi|449434404|ref|XP_004134986.1|3.4e-2260.24PREDICTED: TPD1 protein homolog 1-like isoform X1 [Cucumis sativus][more]
gi|778720136|ref|XP_011658115.1|3.4e-2260.24PREDICTED: TPD1 protein homolog 1-like isoform X2 [Cucumis sativus][more]
gi|659079120|ref|XP_008440086.1|4.4e-2261.73PREDICTED: uncharacterized protein LOC103484668 isoform X2 [Cucumis melo][more]
gi|659079118|ref|XP_008440085.1|4.4e-2261.73PREDICTED: uncharacterized protein LOC103484668 isoform X1 [Cucumis melo][more]
gi|694310334|ref|XP_009352447.1|5.8e-2260.98PREDICTED: uncharacterized protein LOC103943808 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.011750.1Cucsa.011750.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33184FAMILY NOT NAMEDcoord: 1..93
score: 5.4
NoneNo IPR availablePANTHERPTHR33184:SF13SUBFAMILY NOT NAMEDcoord: 1..93
score: 5.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.011750Lsi11G001080Bottle gourd (USVL1VR-Ls)cgylsiB317
Cucsa.011750Cla97C11G206390Watermelon (97103) v2cgywmbB346
The following gene(s) are paralogous to this gene:

None