Cucsa.011710 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGAAGAGCAAGGTTGCCACAAACGTCCTGAGAGTTTGTGATACGAAAGGATATTTTGTTTTCGTCTTAGCTAGCTGGGAAGGATTCGTCACTGACTCACACATACTTCGAGATGCTATTTCTAGACTGAATGGCCTGAGGGTTTTCAAGGGTAACTATGAACGCATACTTCCTACGAGCAATATCTAAAACTTCATCACTTACGACATTTATAACACGCTCAATATCAAAATAGGGTATTACTACCTATGCGACATAGGGTACCCCAATGCTAAGGGTTTTCTAGCACCTTACATAGAACGACAATACAACATGCAGAAGTGGCATGAAGTAAGAAATGCACGAACAACAACGAAAGAGTTCTTCAACATGAAACATTCTTCCTCACATAATGTTATTGAAAGAATTTTTGGTCTTTTGAAGGGTTGATGGACAATTTTTTGAGGAAAGTCCTACTACCCCGTCTAAGTCCAATGTCACACAATACTAACATGTTGTCTACTGCACAACCTCATAAATAGAGAGCTGACAAACACAATGTAATGAGGATATTGATGAGGGTGACTCGATGTACGACATAACTATAGGTGATCACATTTACAATATTGAGACCTCGAACAAATGGAGTTAATGGCAGGATGATTTAGCCAAAGAAATGTTCAGTCAATGGGAGTTGCGTAAACAATAGTACCCCTGGTGTAGCAGTCTACTTCTTTATTTTCTAAATTGTCTTATTATTTGTTGAATGTATGGGTGTAGCCACGAAATGAATGAAACATTCACAAATGACTAGAAGTAGGACCTATTTTGTTCGACGTGTTTACTTGTTCTATAACTCAAATGCTTAACATTTGTTTTtCTTGCATTGTTTGTGAGTATGACAAGTTCAACATGGAGCCTCAAACGTTTGTGGATGAAAGAGGAGAAGTCCACCCTTGTGGAGTGCTTGATGGATTTGGTCTCTACTAATGGGTGGAATTTGAGAACGACACGTTCAAACCCAAGTACCTAGCACGACTAGTGAGAATGATGATGGGGAAGCTGTTAGGATGTACCATCCAAGCGACCAGTACAATTGACTGTAGAATCAAGACTCCGAAAAGAACGTTTCAGGCGATGTCAGAAATGCAGAGCTCATCATGTAGTGGACTTGGTTGGAACGATGAGGTAAAATGCATAATCGCTTAGAAAGAATTGTTTGACAGTTGGGTCAACGTAGGCAAATAATTTATTGCCACAATTATTCGCTTATACAAAAGGAAACTGACAATTTATTTGAAATATTTCACAAAGCCACCTTGCAGCGAAGAATCTCCTAAACAAGTCTTGTCCTTATTACGATGAACTTTCCTACGTGTTCGGGAAAGATCACACTACATTAGCACACGCAGAGACATTCGCTGATGTCGAGCCGAATATGTGGGGCGG atgtggaagagcaaggttgccacaaacgtcctgagagtttgtgatacgaaaggatattttgttttcgtcttagctagctgggaaggattcgtcactgactcacacatacttcgagatgctatttctagactgaatggcctgagggttttcaaggggtattactacctatgcgacatagggtaccccaatgctaagggttttctagcaccttacatagaacgacaatacaacatgcagaagtggcatgaagtaagaaatgcacgaacaacaacgaaagagttcttcaacatgaaacattcttcctcacataatgttattgaaagaatttttgcgaagaatctcctaaacaagtcttgtccttattacgatgaactttcctacgtgttcgggaaagatcacactacattagcacacgcagagacattcgctgatgtcgagccgaatatgtggggcgg ATGTGGAAGAGCAAGGTTGCCACAAACGTCCTGAGAGTTTGTGATACGAAAGGATATTTTGTTTTCGTCTTAGCTAGCTGGGAAGGATTCGTCACTGACTCACACATACTTCGAGATGCTATTTCTAGACTGAATGGCCTGAGGGTTTTCAAGGGGTATTACTACCTATGCGACATAGGGTACCCCAATGCTAAGGGTTTTCTAGCACCTTACATAGAACGACAATACAACATGCAGAAGTGGCATGAAGTAAGAAATGCACGAACAACAACGAAAGAGTTCTTCAACATGAAACATTCTTCCTCACATAATGTTATTGAAAGAATTTTTGCGAAGAATCTCCTAAACAAGTCTTGTCCTTATTACGATGAACTTTCCTACGTGTTCGGGAAAGATCACACTACATTAGCACACGCAGAGACATTCGCTGATGTCGAGCCGAATATGTGGGGCGG MWKSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYPNAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIFAKNLLNKSCPYYDELSYVFGKDHTTLAHAETFADVEPNMWGX
BLAST of Cucsa.011710 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34 Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1
BLAST of Cucsa.011710 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 5.7e-04 Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 1
HSP 2 Score: 151.4 bits (381), Expect = 9.0e-34 Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 1
BLAST of Cucsa.011710 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 8.8e-05 Identity = 36/96 (37.50%), Postives = 47/96 (48.96%), Query Frame = 1
HSP 2 Score: 128.3 bits (321), Expect = 8.2e-27 Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1
BLAST of Cucsa.011710 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1) HSP 1 Score: 30.0 bits (66), Expect = 3.0e+03 Identity = 15/35 (42.86%), Postives = 20/35 (57.14%), Query Frame = 1
HSP 2 Score: 116.7 bits (291), Expect = 2.5e-23 Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
BLAST of Cucsa.011710 vs. TrEMBL
Match: A0A061EE93_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017356 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23 Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1
BLAST of Cucsa.011710 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)) HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13 Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 1
BLAST of Cucsa.011710 vs. TAIR10
Match: AT1G43722.1 (AT1G43722.1 unknown protein) HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07 Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 1
BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|659118458|ref|XP_008459130.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34 Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 1
BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34 Identity = 74/108 (68.52%), Postives = 83/108 (76.85%), Query Frame = 1
BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 153.7 bits (387), Expect = 2.6e-34 Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1
BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 52.4 bits (124), Expect = 8.2e-04 Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 1
HSP 2 Score: 152.1 bits (383), Expect = 7.6e-34 Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 1
BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|659092941|ref|XP_008447300.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo]) HSP 1 Score: 152.1 bits (383), Expect = 7.6e-34 Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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