Cucsa.011710 (gene) Cucumber (Gy14) v1

NameCucsa.011710
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrotransposon protein
Locationscaffold00154 : 1031675 .. 1033105 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGAGCAAGGTTGCCACAAACGTCCTGAGAGTTTGTGATACGAAAGGATATTTTGTTTTCGTCTTAGCTAGCTGGGAAGGATTCGTCACTGACTCACACATACTTCGAGATGCTATTTCTAGACTGAATGGCCTGAGGGTTTTCAAGGGTAACTATGAACGCATACTTCCTACGAGCAATATCTAAAACTTCATCACTTACGACATTTATAACACGCTCAATATCAAAATAGGGTATTACTACCTATGCGACATAGGGTACCCCAATGCTAAGGGTTTTCTAGCACCTTACATAGAACGACAATACAACATGCAGAAGTGGCATGAAGTAAGAAATGCACGAACAACAACGAAAGAGTTCTTCAACATGAAACATTCTTCCTCACATAATGTTATTGAAAGAATTTTTGGTCTTTTGAAGGGTTGATGGACAATTTTTTGAGGAAAGTCCTACTACCCCGTCTAAGTCCAATGTCACACAATACTAACATGTTGTCTACTGCACAACCTCATAAATAGAGAGCTGACAAACACAATGTAATGAGGATATTGATGAGGGTGACTCGATGTACGACATAACTATAGGTGATCACATTTACAATATTGAGACCTCGAACAAATGGAGTTAATGGCAGGATGATTTAGCCAAAGAAATGTTCAGTCAATGGGAGTTGCGTAAACAATAGTACCCCTGGTGTAGCAGTCTACTTCTTTATTTTCTAAATTGTCTTATTATTTGTTGAATGTATGGGTGTAGCCACGAAATGAATGAAACATTCACAAATGACTAGAAGTAGGACCTATTTTGTTCGACGTGTTTACTTGTTCTATAACTCAAATGCTTAACATTTGTTTTtCTTGCATTGTTTGTGAGTATGACAAGTTCAACATGGAGCCTCAAACGTTTGTGGATGAAAGAGGAGAAGTCCACCCTTGTGGAGTGCTTGATGGATTTGGTCTCTACTAATGGGTGGAATTTGAGAACGACACGTTCAAACCCAAGTACCTAGCACGACTAGTGAGAATGATGATGGGGAAGCTGTTAGGATGTACCATCCAAGCGACCAGTACAATTGACTGTAGAATCAAGACTCCGAAAAGAACGTTTCAGGCGATGTCAGAAATGCAGAGCTCATCATGTAGTGGACTTGGTTGGAACGATGAGGTAAAATGCATAATCGCTTAGAAAGAATTGTTTGACAGTTGGGTCAACGTAGGCAAATAATTTATTGCCACAATTATTCGCTTATACAAAAGGAAACTGACAATTTATTTGAAATATTTCACAAAGCCACCTTGCAGCGAAGAATCTCCTAAACAAGTCTTGTCCTTATTACGATGAACTTTCCTACGTGTTCGGGAAAGATCACACTACATTAGCACACGCAGAGACATTCGCTGATGTCGAGCCGAATATGTGGGGCGG

mRNA sequence

atgtggaagagcaaggttgccacaaacgtcctgagagtttgtgatacgaaaggatattttgttttcgtcttagctagctgggaaggattcgtcactgactcacacatacttcgagatgctatttctagactgaatggcctgagggttttcaaggggtattactacctatgcgacatagggtaccccaatgctaagggttttctagcaccttacatagaacgacaatacaacatgcagaagtggcatgaagtaagaaatgcacgaacaacaacgaaagagttcttcaacatgaaacattcttcctcacataatgttattgaaagaatttttgcgaagaatctcctaaacaagtcttgtccttattacgatgaactttcctacgtgttcgggaaagatcacactacattagcacacgcagagacattcgctgatgtcgagccgaatatgtggggcgg

Coding sequence (CDS)

ATGTGGAAGAGCAAGGTTGCCACAAACGTCCTGAGAGTTTGTGATACGAAAGGATATTTTGTTTTCGTCTTAGCTAGCTGGGAAGGATTCGTCACTGACTCACACATACTTCGAGATGCTATTTCTAGACTGAATGGCCTGAGGGTTTTCAAGGGGTATTACTACCTATGCGACATAGGGTACCCCAATGCTAAGGGTTTTCTAGCACCTTACATAGAACGACAATACAACATGCAGAAGTGGCATGAAGTAAGAAATGCACGAACAACAACGAAAGAGTTCTTCAACATGAAACATTCTTCCTCACATAATGTTATTGAAAGAATTTTTGCGAAGAATCTCCTAAACAAGTCTTGTCCTTATTACGATGAACTTTCCTACGTGTTCGGGAAAGATCACACTACATTAGCACACGCAGAGACATTCGCTGATGTCGAGCCGAATATGTGGGGCGG

Protein sequence

MWKSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYPNAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIFAKNLLNKSCPYYDELSYVFGKDHTTLAHAETFADVEPNMWGX
BLAST of Cucsa.011710 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K ++ATNVL VCD KG FV+VLA WEG   DS ILRDAIS+ NGL+V KGYYYLCD GYP
Sbjct: 137 KGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAGYP 196

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           NA+GFLAPY  ++Y++Q+W    NA T  KE+FNMKHSS+ NVIER F
Sbjct: 197 NAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAF 244

BLAST of Cucsa.011710 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-04
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 1

Query: 111 AKNLLNKSCPYYDELSYVFGKDHTTLAHAETFADVEPN 149
           AK LLN   PYYDEL+YVFG+D  T   AETFADV  N
Sbjct: 435 AKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSN 472


HSP 2 Score: 151.4 bits (381), Expect = 9.0e-34
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K +VATNVL VCDTKG FV+VLA WEG   DS ILRDA+SR N L+V KGYYYL D+GYP
Sbjct: 165 KGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDVGYP 224

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           NA+GFLAPY  ++Y++Q+W    NA +T+KEFFNMKH S+ NVIER F
Sbjct: 225 NAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAF 272

BLAST of Cucsa.011710 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.8e-05
Identity = 36/96 (37.50%), Postives = 47/96 (48.96%), Query Frame = 1

Query: 53  YYYLCDIGYPNAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIFAK 112
           ++ L ++  PN  GF             W++ +      KE F+     SH       AK
Sbjct: 432 FHALAEMRGPNCSGF------------GWNDEKKCIVAEKEVFD---DWSHPA-----AK 491

Query: 113 NLLNKSCPYYDELSYVFGKDHTTLAHAETFADVEPN 149
            LLNKS  +YDELSYVFGKD  T   AE+FAD+  N
Sbjct: 492 GLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSN 507


HSP 2 Score: 128.3 bits (321), Expect = 8.2e-27
Identity = 61/108 (56.48%), Postives = 78/108 (72.22%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K+++ATNVL VC     F++VL  WEG  +DS +LRDA+SR NGL V  GYYYL D+GY 
Sbjct: 196 KNEIATNVLGVCSQDMQFIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPHGYYYLVDVGYT 255

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           N KGFLAPY  ++Y++  W E  +  TT +EFFNMKHS++ NVIER F
Sbjct: 256 NGKGFLAPYRGQRYHLNDWRE-GHMPTTHEEFFNMKHSAARNVIERCF 302

BLAST of Cucsa.011710 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 30.0 bits (66), Expect = 3.0e+03
Identity = 15/35 (42.86%), Postives = 20/35 (57.14%), Query Frame = 1

Query: 111 AKNLLNKSCPYYDELSYVFGKDHTTLAHAETFADV 146
           A  L  K  P++D+LS VFGKD      A + AD+
Sbjct: 411 ANGLRLKPFPHFDDLSLVFGKDRANGKGAMSAADI 445


HSP 2 Score: 116.7 bits (291), Expect = 2.5e-23
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K  VATNVL VCD    F++VLA WEG   DS +LRDA+ R +GLRV  G+YYLCD GY 
Sbjct: 181 KGFVATNVLGVCDQHMNFIYVLAGWEGSAADSRVLRDALRRDHGLRVPPGHYYLCDSGYM 240

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIER 109
           +  GFL PY   +Y++++W          KE+FNMKH+S+ NVIER
Sbjct: 241 DCDGFLTPYRGVRYHLREWGPGMQGPQNAKEYFNMKHASARNVIER 286

BLAST of Cucsa.011710 vs. TrEMBL
Match: A0A061EE93_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017356 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.5e-23
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K  +ATN+L VC     FVFVL  WEG V D  +LRDA+ R NGL+V  G YYL D GY 
Sbjct: 89  KGNIATNMLGVCTPDMQFVFVLPGWEGSVADGRVLRDALRRRNGLKVPNGCYYLVDAGYT 148

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           N +GFLAP+  ++Y++ +W +  +  ++ KEFFNMKH+++ NVIER F
Sbjct: 149 NCEGFLAPFRGQRYHLNEWRQ-GHEPSSPKEFFNMKHAAARNVIERCF 195

BLAST of Cucsa.011710 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13
Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 1

Query: 9   NVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYPNAKGFL 68
           NVL        F +VLA WEG  +D  +L  A++R N L+V +G YY+ D  YPN  GF+
Sbjct: 174 NVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDNKYPNLPGFI 233

Query: 69  APYIERQYNMQKWHEV-RNARTTTKEFFNMKHSSSHNVIERIF 111
           APY          H V  N+R   KE FN +H   H  I R F
Sbjct: 234 APY----------HGVSTNSREEAKEMFNERHKLLHRAIHRTF 266

BLAST of Cucsa.011710 vs. TAIR10
Match: AT1G43722.1 (AT1G43722.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 1

Query: 9   NVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGY-YYLCDIGYPNAKGF 68
           N++ +CD K  F ++     G   D+ +L+ A    +   +     YYL D GYPN +G 
Sbjct: 207 NIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSEKYYLVDSGYPNKQGL 266

Query: 69  LAPYIERQYNMQKWHEVR---NARTTTK-EFFNMKHSSSHNVIERIF 111
           LAPY   +  + ++H  +     R   K E FN  H+S  +VIER F
Sbjct: 267 LAPYRSSRNRVVRYHMSQFYYGPRPRNKHELFNQCHTSLRSVIERTF 313

BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|659118458|ref|XP_008459130.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-34
Identity = 72/108 (66.67%), Postives = 88/108 (81.48%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K +VATNVL VCDTKG F++VLA WEG   DS ILRDA+SR NGL+V KGYYYL D+GYP
Sbjct: 123 KGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNGLKVPKGYYYLVDVGYP 182

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           NA+GFLAPY  ++Y++Q+W    NA +T+K+FFNMKHSS+ NVIER F
Sbjct: 183 NAEGFLAPYRGQRYHLQEWRGPENAPSTSKKFFNMKHSSARNVIERAF 230

BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 74/108 (68.52%), Postives = 83/108 (76.85%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K +VATNVL  CDTKG FVFVL  WEG   DS ILRDAISR NGL+V KGYYYLCD GYP
Sbjct: 123 KGEVATNVLGACDTKGDFVFVLFGWEGSAADSRILRDAISRHNGLKVPKGYYYLCDAGYP 182

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           NA+GFLAPY   +Y++ +W    NA TT +EFFNMKHSS+ NVIER F
Sbjct: 183 NAEGFLAPYRGERYHLSEWRGESNAPTTAREFFNMKHSSARNVIERAF 230

BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.6e-34
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K ++ATNVL VCD KG FV+VLA WEG   DS ILRDAIS+ NGL+V KGYYYLCD GYP
Sbjct: 137 KGEIATNVLGVCDMKGDFVYVLAGWEGSAADSRILRDAISQENGLQVPKGYYYLCDAGYP 196

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           NA+GFLAPY  ++Y++Q+W    NA T  KE+FNMKHSS+ NVIER F
Sbjct: 197 NAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAF 244

BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 52.4 bits (124), Expect = 8.2e-04
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 1

Query: 111 AKNLLNKSCPYYDELSYVFGKDHTTLAHAETFADVEPN 149
           AK LLN   PYYDEL+YVFG+D  T   AETFADV  N
Sbjct: 435 AKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSN 472


HSP 2 Score: 152.1 bits (383), Expect = 7.6e-34
Identity = 72/108 (66.67%), Postives = 86/108 (79.63%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K +VATNVL VCDTKG FV+VL  WEG   DS ILRDA+SR N L+V KGYYYL D+GYP
Sbjct: 105 KGEVATNVLGVCDTKGDFVYVLVGWEGSAADSRILRDALSRPNELKVPKGYYYLVDVGYP 164

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIF 111
           NA+GFLAPY  ++Y++Q+W    NA +T+KEFFNMKHSS+ NVIER F
Sbjct: 165 NAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAF 212

BLAST of Cucsa.011710 vs. NCBI nr
Match: gi|659092941|ref|XP_008447300.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 7.6e-34
Identity = 73/109 (66.97%), Postives = 87/109 (79.82%), Query Frame = 1

Query: 3   KSKVATNVLRVCDTKGYFVFVLASWEGFVTDSHILRDAISRLNGLRVFKGYYYLCDIGYP 62
           K KVATNVL VCDTKG FV+V+A  EG   DS ILRDA+SR NGL+V KGYYYL D GYP
Sbjct: 29  KGKVATNVLGVCDTKGDFVYVIAGCEGSAADSRILRDALSRPNGLKVSKGYYYLVDAGYP 88

Query: 63  NAKGFLAPYIERQYNMQKWHEVRNARTTTKEFFNMKHSSSHNVIERIFA 112
           NAKGFLAPY  ++Y++Q+W    NA +T+KEFFN+KHSS+ NVIER F+
Sbjct: 89  NAKGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNIKHSSARNVIERAFS 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.8e-3466.67Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME5.7e-0465.79Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME8.8e-0537.50Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5BND9_VITVI3.0e+0342.86Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
A0A061EE93_THECC5.5e-2350.93Uncharacterized protein OS=Theobroma cacao GN=TCM_017356 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G41980.12.1e-1340.78 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT1G43722.11.7e-0732.71 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659118458|ref|XP_008459130.1|1.2e-3466.67PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659111563|ref|XP_008455792.1|1.5e-3468.52PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|2.6e-3466.67retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135889|gb|ADN33754.1|8.2e-0465.79retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659092941|ref|XP_008447300.1|7.6e-3466.97PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.011710.1Cucsa.011710.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 2..111
score: 9.5
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..110
score: 4.0
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 1..110
score: 4.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None