Cucsa.005050 (gene) Cucumber (Gy14) v1

BLAST of Cucsa.005050 vs. Swiss-Prot
Match: NRPA2_ARATH (DNA-directed RNA polymerase I subunit 2 OS=Arabidopsis thaliana GN=NRPA2 PE=2 SV=1)

HSP 1 Score: 1712.2 bits (4433), Expect = 0.0e+00
Identity = 831/1163 (71.45%), Postives = 984/1163 (84.61%), Query Frame = 1

Query: 9    EDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQK 68
            ED++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L IWL  P ++ PQK
Sbjct: 14   EDFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFAPQK 73

Query: 69   ERNLRTIR-EALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLC 128
            E    T R E LLP+ECRQAKISYTG FMADVCF+Y++  V+R+KF+FGQFPIML SKLC
Sbjct: 74   ESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLC 133

Query: 129  HLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYT 188
             L+G D +KL+   E  SEMGGYF++NG+ERV R +IAPKRN+PTSM+RNSF DR+EGY+
Sbjct: 134  SLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYS 193

Query: 189  DKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYA 248
             KAVV RCVR+DQSSVTVKLYYLRNGSAR+GFW+ G+EYLLP+G+VLKAL ++ D EIY 
Sbjct: 194  SKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYE 253

Query: 249  SLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLG 308
            SL  CYS+ +G+  GA+GTQLV ERAKIILDEVRDL LF   QC  H+GQHFQPV++G+ 
Sbjct: 254  SLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVK 313

Query: 309  KEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLL 368
            KE  S VA+AVL+DY+FVHLDN++DKFNLLIF+ QKL+SL+DQTS+PDNPDSLQNQ++L+
Sbjct: 314  KESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILV 373

Query: 369  PGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVE 428
            PG +IT+YLKEKLE+WL+K K LL+DE+ N +  F F SLA VKK+++KNP + + +++E
Sbjct: 374  PGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIE 433

Query: 429  NMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLP 488
             +LKTG L TQ+GLDLQQRAG+TVQAERLNFLRF+S FRAVHRGASFAGLRTTTVRKLLP
Sbjct: 434  TLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLP 493

Query: 489  ESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIP 548
            ESWGFLCPVHTPDG PCGLLNH+T T RITS F+S+G +RDF KIR S++ VL   GM+P
Sbjct: 494  ESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVP 553

Query: 549  SLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPL 608
            SLPKLV+ G P  ++VLLDG++VG +SSN V K+V+++RRLKV +P VIP+DLEVGYVP 
Sbjct: 554  SLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPT 613

Query: 609  SISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKD 668
            S+ G+YPGLYL + P+RF+RPVKN+SI P D  NIELIGPFEQVFMEI CPDGG+GGR +
Sbjct: 614  SMGGSYPGLYLASCPARFIRPVKNISI-PSD--NIELIGPFEQVFMEISCPDGGNGGRNN 673

Query: 669  EFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLY 728
               ATHEEIHPTGM+SVVANLTPWSDHNQSPRNMYQCQMAKQTMA+S QA+++RADQK+Y
Sbjct: 674  SSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIY 733

Query: 729  HLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 788
            HLQTPQ+P+VRT TYT Y+IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSVERGM HGQ
Sbjct: 734  HLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQ 793

Query: 789  IYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDE 848
            IYQTE IDLSDQ +R     K FRRS  + +    IDADGLP VGQ + PDEPYCSIYDE
Sbjct: 794  IYQTENIDLSDQNSRFDSGSKSFRRST-NKAEHFRIDADGLPSVGQKLYPDEPYCSIYDE 853

Query: 849  VAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVC 908
            V   TR MK KG++ VIVD+VSVD+K+K +PQ+ NIRFR  RNP+IGDKFSSRHGQKGVC
Sbjct: 854  VTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVC 913

Query: 909  SQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRS 968
            SQLWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ES+AAKGG L+G+FV+ATPFR 
Sbjct: 914  SQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRD 973

Query: 969  SVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQR 1028
            +V KTN G+EE+    LVD+LGS L +KGFN++G E LYSG  G EL CEIF+GPVYYQR
Sbjct: 974  AVKKTN-GEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQR 1033

Query: 1029 LRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTC 1088
            LRHMVSDK+QVRSTG VDQ+T QPIKGRK+GGGIRFGEMERDS+LAHGASYLLHDRLHT 
Sbjct: 1034 LRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTS 1093

Query: 1089 SDHHIADVCSLCGSVLTSSFVQ-PPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAM 1148
            SDHHIADVCSLCGS+LTSS V    K+ ++EIG LPPG+ PK+VTC++CKTSKGMETVAM
Sbjct: 1094 SDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAM 1153

Query: 1149 PYVFKYLAAELAAMNIKMTLQLS 1170
            PYVF+YLAAELA+MNIKMTLQLS
Sbjct: 1154 PYVFRYLAAELASMNIKMTLQLS 1171

BLAST of Cucsa.005050 vs. Swiss-Prot
Match: RPA2_HUMAN (DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2)

HSP 1 Score: 906.4 bits (2341), Expect = 3.3e-262
Identity = 512/1167 (43.87%), Postives = 708/1167 (60.67%), Query Frame = 1

Query: 13   ALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNL 72
            AL+EL R H+ESF++ V  GL   + +I P E   +F ++++   +    + PP   +  
Sbjct: 34   ALQELTRAHVESFNYAVHEGLGLAVQAIPPFEF--AFKDERISFTILDAVISPPTVPKGT 93

Query: 73   RTIREALLPYECRQAKISYTGKFMADVCFQYD--EKAVIREKFNFGQFPIMLKSKLCHLR 132
                  + P ECR  + +Y GK  AD+ +  +   K +I++    G  PIM+KSKLC+LR
Sbjct: 94   ICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLR 153

Query: 133  GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKA 192
             L P+ L+ ++EEA EMGGYF++NG+E+V+R+LI P+RN+P +M+R  +  R  GYT   
Sbjct: 154  NLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYG 213

Query: 193  VVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLT 252
            V + CVRE+ S+V + L+YL NG+  L F  + + + LP+G  LKAL+  +D++I+  L 
Sbjct: 214  VSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI 273

Query: 253  SCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEK 312
                   GK   +     V +  +I+++E         +Q L+++G+ F+  +       
Sbjct: 274  K------GKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYP 333

Query: 313  FSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQ 372
                A+ +    I +HL +N +KF +L  M +KLF+L     + DNPDSL NQ+VL PGQ
Sbjct: 334  NEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQ 393

Query: 373  LITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENML 432
            L  ++LKEKLE WL  +K   + +    S +    +L  +  +        ++   E + 
Sbjct: 394  LFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLF 453

Query: 433  KTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESW 492
             TG L ++TGL L Q +G  V A++LNF+R++SHFR VHRGA FA +RTTTVR+LLPESW
Sbjct: 454  ATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESW 513

Query: 493  GFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLP 552
            GFLCPVHTPDGEPCGL+NHLT+ C + + F              SI ++L  +G+ P + 
Sbjct: 514  GFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-ID 573

Query: 553  KLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSIS 612
                    +   VLLDG +VG++  +    I   LR  KVL    IP  +EV  +P++  
Sbjct: 574  GAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGK 633

Query: 613  GA-YPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEF 672
             + YPGL+LFT+P R VRPV+NL++  E     ELIG  EQ+FM +   +       DE 
Sbjct: 634  PSLYPGLFLFTTPCRLVRPVQNLALGKE-----ELIGTMEQIFMNVAIFE-------DEV 693

Query: 673  PA---THEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKL 732
             A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTM F L   + R+D KL
Sbjct: 694  FAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKL 753

Query: 733  YHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHG 792
            Y LQTPQ+P+VR S Y  Y++D YP GTNAIVAV++YTGYDMEDAMI+NK+S ERG  HG
Sbjct: 754  YRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 813

Query: 793  QIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYD 852
             +Y++E IDLS++  +   S  +F     D  V   +D DGLP++G  +Q  +PY S  +
Sbjct: 814  SVYKSEFIDLSEK-IKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLN 873

Query: 853  EVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQK---VNIRFRRPRNPMIGDKFSSRHGQ 912
               G +  M  K  E  +VD + V   N     K   V I  R PRNP IGDKF+SRHGQ
Sbjct: 874  LNTGESFVMYYKSKENCVVDNIKV-CSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQ 933

Query: 913  KGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNAT 972
            KG+ S+LWP  DMPF   +GM PD++ NPH FPSRMTI ML+ES+A K   L+G   +AT
Sbjct: 934  KGILSRLWPAEDMPFT-ESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 993

Query: 973  PFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPV 1032
            PF  S        EE +    ++  G  L   G+N++G E LYSG+ G EL  +IFIG V
Sbjct: 994  PFIFS--------EENSA---LEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVV 1053

Query: 1033 YYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDR 1092
            YYQRLRHMVSDK+QVR+TG  D+VT QPI GR   GGIRFGEMERD++LAHG S+LLHDR
Sbjct: 1054 YYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1113

Query: 1093 LHTCSDHHIADVCSLCGSVLTSSFVQPPK--RAVREIGGLPPGKAPKRVTCHACKTSKGM 1152
            L  CSD  +A VC  CGS+L+    +PP    A+R           ++  C  C  S  +
Sbjct: 1114 LFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRN----------RKYNCTLCSRSDTI 1134

Query: 1153 ETVAMPYVFKYLAAELAAMNIKMTLQL 1169
            +TV++PYVF+Y  AELAAMNIK+ L +
Sbjct: 1174 DTVSVPYVFRYFVAELAAMNIKVKLDV 1134

BLAST of Cucsa.005050 vs. Swiss-Prot
Match: RPA2_SCHPO (Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa2 PE=3 SV=2)

HSP 1 Score: 899.8 bits (2324), Expect = 3.1e-260
Identity = 509/1217 (41.82%), Postives = 729/1217 (59.90%), Query Frame = 1

Query: 7    ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVE---IYDSFTNK---------KL 66
            +   +  L++  + H++SF+ L +AGL  L  ++K +     +DS T +         K+
Sbjct: 18   DGTSFPDLQKAVKPHVDSFNALTNAGL--LNYAVKEIGEKCAFDSITQEEGGALKFGNKI 77

Query: 67   RIWLGKPELYPPQ-KERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKF 126
               + + ++  P    R   +I   + P E R+   +Y  + +    +  +      E  
Sbjct: 78   SFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMR 137

Query: 127  NFGQFPIMLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTS 186
              G  PIM++S  CHL GL P +L+++ EE+ EMGGYF++NG+E+++R+LI PKRN+PT+
Sbjct: 138  EVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTA 197

Query: 187  MVRNSFSDRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVV 246
            ++R SF++R   Y+   + IRCVR DQSS+T  L+YL NG     F  +  EYL+P  ++
Sbjct: 198  IIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMI 257

Query: 247  LKALIDTTDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLD 306
            LKAL++T+D EI+  +        GK    +G   + +R +++L   +   L+   + L 
Sbjct: 258  LKALLETSDKEIFEGIV-------GKD---LGNTFLTDRVELMLRAYKSYGLYSQTETLQ 317

Query: 307  HIGQHFQPVMEGLGKEKFST-VADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTS 366
            ++G  F+ V+ G+ ++     V   +L+  + VHL    DKF LL+FM +KL++L+    
Sbjct: 318  YLGSKFRVVL-GVAEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLYALVAGEC 377

Query: 367  VPDNPDSLQNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKK 426
              DNPDS Q+Q++LL G L    LKEK+EDWL  ++  +  ++   +   +F    ++ +
Sbjct: 378  CADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTR 437

Query: 427  VMDKNPSKQVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGA 486
            V  K  +  + + ++  L TG LV+ TGLDLQQ  G+TV AE+LNF RF+SHFR VHRGA
Sbjct: 438  VFSKI-NNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGA 497

Query: 487  SFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKI 546
             FA L+TTTVRKLLPE+WGF+CPVHTPDG PCGLLNHL   C I +H +   ++      
Sbjct: 498  FFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIP----- 557

Query: 547  RTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKV-- 606
                 S+L+++G+ P      + G   +  V LDG+IVG+ +    + +   LR +K+  
Sbjct: 558  -----SLLLSLGVDPPSVVGHESG---WGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEY 617

Query: 607  ---------LSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHN 666
                       P  +P DLE+GYVP S +G YPGLYLF++P+R VRPVK++S        
Sbjct: 618  AVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTG-----E 677

Query: 667  IELIGPFEQVFMEIRCPDGGDGGRKDEFP--ATHEEIHPTGMLSVVANLTPWSDHNQSPR 726
            ++++GPFEQV+M+I C        K+  P  +TH E  PT +LS+VAN+TP+SD NQSPR
Sbjct: 678  LDMLGPFEQVYMDIACFP------KEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPR 737

Query: 727  NMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVA 786
            NMYQCQM KQTM     A+RYR D KLY LQT QTP+VR   +  Y +D YP GTNA+VA
Sbjct: 738  NMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVA 797

Query: 787  VLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSV 846
            V++YTGYDMEDAMILNKS+ ERG  +G +Y+ E+ DLS +  R       F  +   T  
Sbjct: 798  VISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPR 857

Query: 847  R---SIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSV---DVK 906
            R     +DADGLP++G  ++  +P  + YDE  G        G+E   VD V +   DV 
Sbjct: 858  REWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDV- 917

Query: 907  NKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPH 966
              +  Q+++++ R  R+P+IGDKFSSRHGQKG+CSQ WP VDMPF   +GM+PD+IINPH
Sbjct: 918  GDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFT-ESGMQPDIIINPH 977

Query: 967  AFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLVDELGSTLI 1026
            AFPSRMTI M +ES+A K G  +G   ++TPF  S  +T A           D  G  L+
Sbjct: 978  AFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTAA-----------DYFGEQLV 1037

Query: 1027 KKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIK 1086
            K G+NYHG E +YSG+ G E+  +I+IG VYYQRLRHMVSDK+QVR+TG +  +TRQP+K
Sbjct: 1038 KAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVK 1097

Query: 1087 GRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKR 1146
            GRK+ GGIRFGEMERD+++ HG S+L+ DRL  CSD+  + VC  CGS+++         
Sbjct: 1098 GRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIIS--------- 1157

Query: 1147 AVREIGGLPPGKAPKRVTCHAC-KTSKGME---------------------TVAMPYVFK 1169
             +  I     G A   V C +C K + G+E                      +A+P VF 
Sbjct: 1158 IMSTISMNGVGSA-SEVRCRSCAKPALGLEDTSDIWQDGSGKKFVGGTNTTLIALPSVFN 1173

BLAST of Cucsa.005050 vs. Swiss-Prot
Match: RPA2_MOUSE (DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b PE=1 SV=2)

HSP 1 Score: 899.0 bits (2322), Expect = 5.3e-260
Identity = 504/1164 (43.30%), Postives = 712/1164 (61.17%), Query Frame = 1

Query: 13   ALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNL 72
            AL++L R H++SF++    GL   + +I P E   +F ++++ + +    + PP   +  
Sbjct: 34   ALQDLTRAHVDSFNYAALEGLSHAVQAIPPFEF--AFKDERISLTIVDAVISPPSVPKGT 93

Query: 73   RTIREALLPYECRQAKISYTGKFMADVCFQYD--EKAVIREKFNFGQFPIMLKSKLCHLR 132
                  + P ECR  K +Y G+  AD+ +  +   K +I++    G  PIM+KSKLC+L 
Sbjct: 94   ICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLY 153

Query: 133  GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKA 192
             L P+ L+ ++EEA EMGGYF++NG+E+V+R+LI P+RN+P +MVR  +  R  GYT   
Sbjct: 154  NLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFG 213

Query: 193  VVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLT 252
            V +RCVRE+ S+V + L+Y+ NG+  L F  + + + LP+G  LKAL+  +D++I+  L 
Sbjct: 214  VSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI 273

Query: 253  SCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEK 312
                   GK + +     V +  +I+++E         +Q L+++G+ F+  +       
Sbjct: 274  K------GKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYP 333

Query: 313  FSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQ 372
                A+ +L   I +HL +N DKF LL  M +KLF+L     + DNPDSL NQ+VL PGQ
Sbjct: 334  NVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQ 393

Query: 373  LITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENML 432
            L  ++LKEK+E+WL  +K +L+      + +    +L  +  +       +++   E +L
Sbjct: 394  LFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLL 453

Query: 433  KTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESW 492
             TG L ++TGL   Q +G  V A++LNFLR++SHFR VHRGA+FA +RTTTVR+LLPESW
Sbjct: 454  ATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESW 513

Query: 493  GFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLP 552
            GFLCPVHTPDG PCGLLNHLT+ C + + F              SI ++L  +G+ P + 
Sbjct: 514  GFLCPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-VD 573

Query: 553  KLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSIS 612
                    D   VLLDG +VG++  +   ++   LRR KVL    IP  +EV  +P++  
Sbjct: 574  TAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTGK 633

Query: 613  GA-YPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRC-PDGGDGGRKDE 672
             + YPGL+LFT+P R VRPV+NL +  E     ELIG  EQ+FM +    D   GG    
Sbjct: 634  PSLYPGLFLFTTPCRLVRPVQNLELGRE-----ELIGTMEQLFMNVAIFEDEVFGGI--- 693

Query: 673  FPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYH 732
              +TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTM F L   + R+D KLY 
Sbjct: 694  --STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYR 753

Query: 733  LQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQI 792
            LQTPQ+P+VR   Y  Y++D YP GTNAIVAV++YTGYDMEDAMI+NK+S ERG  HG +
Sbjct: 754  LQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 813

Query: 793  YQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEV 852
            Y++E IDLS++  +      +F     D  V   +D DGLP++G  ++  +PY S  +  
Sbjct: 814  YKSEFIDLSEK-FKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYLNLN 873

Query: 853  AGTTRTMKLKGSEAVIVDYVSVDVKNKNNP--QKVNIRFRRPRNPMIGDKFSSRHGQKGV 912
             G    +  K  E  +VD + V   +  +   + + I  R PRNP IGDKF+SRHGQKG+
Sbjct: 874  TGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGI 933

Query: 913  CSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFR 972
             S+LWP  DMPF   +GM PD++ NPH FPSRMTI ML+ES+A K   L+G   +ATPF 
Sbjct: 934  LSRLWPAEDMPFT-ESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFI 993

Query: 973  SSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQ 1032
             S        EE +    ++  G  L   G+N++G E LYSG+ G EL  +IFIG VYYQ
Sbjct: 994  FS--------EENSA---LEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQ 1053

Query: 1033 RLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHT 1092
            RLRHMVSDK+QVR+TG  D+VT QP+ GR   GGIRFGEMERD++LAHG S+LLHDRL  
Sbjct: 1054 RLRHMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFN 1113

Query: 1093 CSDHHIADVCSLCGSVLTSSFVQPPK--RAVREIGGLPPGKAPKRVTCHACKTSKGMETV 1152
            CSD  +A +C  CGS+L+    +PP    A+R           ++  C  C  S  ++TV
Sbjct: 1114 CSDRSVAHMCVECGSLLSPLLEKPPPSWSAMRN----------RKYNCTVCGRSDTIDTV 1134

Query: 1153 AMPYVFKYLAAELAAMNIKMTLQL 1169
            ++PYVF+Y  AELAAMNIK+ L +
Sbjct: 1174 SVPYVFRYFVAELAAMNIKVKLDV 1134

BLAST of Cucsa.005050 vs. Swiss-Prot
Match: RPA2_PONAB (DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B PE=2 SV=1)

HSP 1 Score: 898.3 bits (2320), Expect = 9.1e-260
Identity = 510/1168 (43.66%), Postives = 705/1168 (60.36%), Query Frame = 1

Query: 13   ALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNL 72
            AL+EL R H+ESF++ V  GL   + +I P E   +F ++++   +    + PP   +  
Sbjct: 34   ALQELTRAHVESFNYAVHEGLGLAVQAIPPFEF--AFKDERISFTILDAVISPPTVPKGT 93

Query: 73   RTIREALLPYECRQAKISYTGKFMADVCFQYD--EKAVIREKFNFGQFPIMLKSKLCHLR 132
                 ++ P ECR  + +Y GK  AD+ +  +   K +I++    G  PIM+KSKLC+L 
Sbjct: 94   ICKEVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLY 153

Query: 133  GLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKA 192
             L P+ L+ ++EEA EMGGYF++NG+E+V+R+LI P+RN+P +MVR  +  R  GYT   
Sbjct: 154  NLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYG 213

Query: 193  VVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLT 252
            V + CVRE+ S+V + L+YL NG+  L F  + + + LP+G  LKAL+  +D++I+  L 
Sbjct: 214  VSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI 273

Query: 253  SCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEK 312
                   GK   +     V +  +I+++E         +Q L+++G+ F+  +       
Sbjct: 274  K------GKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYP 333

Query: 313  FSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQ 372
                A+ +    I +HL +N +KF +L  M +KLF+L     + DNPDSL NQ+VL PGQ
Sbjct: 334  NEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQ 393

Query: 373  LITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENML 432
            L  ++LKEKLE WL  +K   + +    + +    +L  +  +        ++   E + 
Sbjct: 394  LFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLF 453

Query: 433  KTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESW 492
             TG L ++TGL L Q +G  V A++LNF+R++SHFR VHRGA FA +RTTTVR+LLPESW
Sbjct: 454  ATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESW 513

Query: 493  GFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLP 552
            GFLCPVHTPDGEPCGL+NHLT+ C + + F              SI ++L  +G+ P + 
Sbjct: 514  GFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-ID 573

Query: 553  KLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSIS 612
                    +   VLLDG +VG++       I   LR  KVL    IP   EV  +P++  
Sbjct: 574  GAPHRSYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGK 633

Query: 613  GA-YPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEF 672
             + YPGL+LFT+P R VRPV+NL +  E     ELIG  EQ+FM +   +       DE 
Sbjct: 634  PSLYPGLFLFTTPCRLVRPVQNLELGKE-----ELIGTMEQIFMNVAIFE-------DEV 693

Query: 673  PA---THEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKL 732
             A   TH+E+ P  +LSV+AN  P+SDHNQSPRNMYQCQM KQTM F L   + R+D KL
Sbjct: 694  FAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKL 753

Query: 733  YHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHG 792
            Y LQTPQ+P+VR S Y  Y++D YP GTNAIVAV++YTGYDMEDAMI+NK+S ERG  HG
Sbjct: 754  YRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 813

Query: 793  QIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYD 852
             +Y++E IDLS++  +   S  +F     D  +   +D DGLP++G  +Q  +PY S  +
Sbjct: 814  SVYKSEFIDLSEK-IKQGDSSLVFGMKPGDPRILQKLDDDGLPFIGAKLQYGDPYYSYLN 873

Query: 853  EVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQK---VNIRFRRPRNPMIGDKFSSRHGQ 912
               G +  M  K  E  +VD + V   N     K   V I  R PRNP IGDKF+SRHGQ
Sbjct: 874  LNTGESFVMYYKSKENCVVDNIKV-CSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQ 933

Query: 913  KGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNAT 972
            KG+ S+LWP  DMPF   +GM PD++ NPH FPSRMTI ML+ES+A K   L+G   +AT
Sbjct: 934  KGILSRLWPAEDMPFT-ESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 993

Query: 973  PFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPV 1032
            PF  S        EE +    ++  G  L   G+N++G E LYSG+ G EL  +IFIG V
Sbjct: 994  PFIFS--------EENSA---LEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVV 1053

Query: 1033 YYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGAS-YLLHD 1092
            YYQRLRHMVSDK+QVR+TG  D+VT QPI GR   GGIRFGEMERD++LAHG S +LLHD
Sbjct: 1054 YYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHD 1113

Query: 1093 RLHTCSDHHIADVCSLCGSVLTSSFVQPPK--RAVREIGGLPPGKAPKRVTCHACKTSKG 1152
            RL  CSD  +A VC  CGS+L+    +PP    A+R           ++  C  C  S  
Sbjct: 1114 RLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRN----------RKYNCTLCNRSDT 1135

Query: 1153 METVAMPYVFKYLAAELAAMNIKMTLQL 1169
            ++TV++PYVF+Y  AELAAMNIK+ L +
Sbjct: 1174 IDTVSVPYVFRYFVAELAAMNIKVKLDV 1135

BLAST of Cucsa.005050 vs. TrEMBL
Match: A0A0A0KIZ8_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G400300 PE=3 SV=1)

HSP 1 Score: 2258.0 bits (5850), Expect = 0.0e+00
Identity = 1125/1156 (97.32%), Postives = 1132/1156 (97.92%), Query Frame = 1

Query: 18   FRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNLRTIRE 77
            FR   +S+   +D+     M S+      D  T   + +WLGKPELYPPQKERNLRTIRE
Sbjct: 106  FRMVSDSWSWTIDSSSMFTMKSM-----IDDLT---VSLWLGKPELYPPQKERNLRTIRE 165

Query: 78   ALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRGLDPKKL 137
            ALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRGLDPKKL
Sbjct: 166  ALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRGLDPKKL 225

Query: 138  VSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAVVIRCVR 197
            VSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAVVIRCVR
Sbjct: 226  VSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAVVIRCVR 285

Query: 198  EDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLTSCYSDKH 257
            EDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLTSCYSDKH
Sbjct: 286  EDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLTSCYSDKH 345

Query: 258  GKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADA 317
            GKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADA
Sbjct: 346  GKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADA 405

Query: 318  VLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLK 377
            VLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLK
Sbjct: 406  VLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLK 465

Query: 378  EKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVT 437
            EKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVT
Sbjct: 466  EKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVT 525

Query: 438  QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVH 497
            QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVH
Sbjct: 526  QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVH 585

Query: 498  TPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGL 557
            TPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGL
Sbjct: 586  TPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGL 645

Query: 558  PDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLY 617
            PDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLY
Sbjct: 646  PDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLY 705

Query: 618  LFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIH 677
            LFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIH
Sbjct: 706  LFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIH 765

Query: 678  PTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIV 737
            PTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIV
Sbjct: 766  PTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIV 825

Query: 738  RTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLS 797
            RTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLS
Sbjct: 826  RTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLS 885

Query: 798  DQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKL 857
            DQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKL
Sbjct: 886  DQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKL 945

Query: 858  KGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMP 917
            KGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMP
Sbjct: 946  KGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMP 1005

Query: 918  FCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDE 977
            FCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDE
Sbjct: 1006 FCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDE 1065

Query: 978  ETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQ 1037
            ETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQ
Sbjct: 1066 ETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQ 1125

Query: 1038 VRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCS 1097
            VRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCS
Sbjct: 1126 VRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCS 1185

Query: 1098 LCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAEL 1157
            LCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAEL
Sbjct: 1186 LCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAEL 1245

Query: 1158 AAMNIKMTLQLSSGAA 1174
            AAMNIKMTLQLSSGAA
Sbjct: 1246 AAMNIKMTLQLSSGAA 1253

BLAST of Cucsa.005050 vs. TrEMBL
Match: A0A0R0GQW5_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_13G192600 PE=3 SV=1)

HSP 1 Score: 1921.4 bits (4976), Expect = 0.0e+00
Identity = 935/1172 (79.78%), Postives = 1050/1172 (89.59%), Query Frame = 1

Query: 1    MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60
            MV K     D+EALRELF+HHIESFD++VDAGL+T++  IKPVE++D FT+ KLRIWL  
Sbjct: 1    MVAKPGSVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDN 60

Query: 61   PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120
            P LYPPQKER  RT+REALLP+ECRQAKISY+GK   DVCFQY++  +IRE  NFGQFPI
Sbjct: 61   PVLYPPQKERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPI 120

Query: 121  MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS 180
            ML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERVVRLLI PKRNYP SMVRNSFS
Sbjct: 121  MLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFS 180

Query: 181  DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT 240
            DRREGYTDKAVVIRCVR DQSS++V+LYYLRNGSARLGFW++G+EYLLP+G++LKALIDT
Sbjct: 181  DRREGYTDKAVVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDT 240

Query: 241  TDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQ 300
            TD EIY +LTSCY++K+ K KGAVGTQLVGERAKIILDE+RDL+LF   QCL++IG+HFQ
Sbjct: 241  TDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQ 300

Query: 301  PVMEGLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL 360
            PVM  L  + +  VADAVLKD I VHLDNN+DKFNLLIFM QKLFSLIDQTSVPDNPDSL
Sbjct: 301  PVMNELKNDSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSL 360

Query: 361  QNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK 420
            QN +VLLPG LITLYLKEKLEDWLQK ++LL DEI   SK F+F  +  VKKVMDKN  K
Sbjct: 361  QNHEVLLPGHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPK 420

Query: 421  QVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480
            QVS+AVENMLKTGRLVTQTGLDLQQRAG+TVQAERLNFLRF+SHFRAVHRGASFAGLRTT
Sbjct: 421  QVSTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTT 480

Query: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVL 540
            TVRKLLPESWGFLCPVHTPDGEPCGLLNH+T T RITS F+SQG ++D++KI+ SIL+VL
Sbjct: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVL 540

Query: 541  IAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDL 600
            + VGM PSLPK+   G P+ L VLLDG +VG I+S+EVEK+VAH+R LKV S  VIPDD+
Sbjct: 541  LEVGMTPSLPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDM 600

Query: 601  EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG 660
            EVGYVPLS+ GAYPGLYL TSPSRFVRPV+N+SI+ + + NIELIGPFEQVFMEIRCPDG
Sbjct: 601  EVGYVPLSMGGAYPGLYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDG 660

Query: 661  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 720
            GDGGRK  FPATHEEIHPT MLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFS Q I++
Sbjct: 661  GDGGRKSSFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQH 720

Query: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780
            RADQKLYHLQTPQTPIVRTSTYTKYNIDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSVE
Sbjct: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780

Query: 781  RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP 840
            RGMFHGQIYQTETIDL++QG RS RS +MFR+SNI+ S    ID+DGLP+VGQMI+PDEP
Sbjct: 781  RGMFHGQIYQTETIDLTEQGGRSDRSSRMFRKSNIEKSACPSIDSDGLPHVGQMIRPDEP 840

Query: 841  YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR 900
            YCSIY+EV  +  T+K KGSEAV VDYV+ DVKNK + QKVNIRFR PRNP+IGDKFSSR
Sbjct: 841  YCSIYNEVTSSIHTLKRKGSEAVYVDYVAADVKNKKHLQKVNIRFRHPRNPVIGDKFSSR 900

Query: 901  HGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV 960
            HGQKGVCSQLWPDVDMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAKGG L GEFV
Sbjct: 901  HGQKGVCSQLWPDVDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFV 960

Query: 961  NATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI 1020
            +ATPFRSSV K ++G+ ++   +LVD+LG  L +KGFNYHGLEVLYSGVYGTELTCEIFI
Sbjct: 961  DATPFRSSVTK-DSGESDSKSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFI 1020

Query: 1021 GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL 1080
            GPVYYQRLRHMVSDK+QVRSTGT+DQVTRQPIKGRK+GGGIRFGEMERDS+LAHGA+YLL
Sbjct: 1021 GPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1080

Query: 1081 HDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG 1140
            HDRLHTCSD+HIADVCSLCGS+L ++F+QP KR VREIGGLPPG+APK+VTCHAC+TSKG
Sbjct: 1081 HDRLHTCSDYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKG 1140

Query: 1141 METVAMPYVFKYLAAELAAMNIKMTLQLSSGA 1173
            METVAMPYVF+YLAAELAAMNIKMTL+LS GA
Sbjct: 1141 METVAMPYVFRYLAAELAAMNIKMTLKLSDGA 1171

BLAST of Cucsa.005050 vs. TrEMBL
Match: I1M0N3_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max PE=3 SV=2)

HSP 1 Score: 1921.4 bits (4976), Expect = 0.0e+00
Identity = 935/1172 (79.78%), Postives = 1050/1172 (89.59%), Query Frame = 1

Query: 1    MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60
            MV K     D+EALRELF+HHIESFD++VDAGL+T++  IKPVE++D FT+ KLRIWL  
Sbjct: 52   MVAKPGSVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDN 111

Query: 61   PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120
            P LYPPQKER  RT+REALLP+ECRQAKISY+GK   DVCFQY++  +IRE  NFGQFPI
Sbjct: 112  PVLYPPQKERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPI 171

Query: 121  MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS 180
            ML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERVVRLLI PKRNYP SMVRNSFS
Sbjct: 172  MLQSKLCNLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFS 231

Query: 181  DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT 240
            DRREGYTDKAVVIRCVR DQSS++V+LYYLRNGSARLGFW++G+EYLLP+G++LKALIDT
Sbjct: 232  DRREGYTDKAVVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDT 291

Query: 241  TDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQ 300
            TD EIY +LTSCY++K+ K KGAVGTQLVGERAKIILDE+RDL+LF   QCL++IG+HFQ
Sbjct: 292  TDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQ 351

Query: 301  PVMEGLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL 360
            PVM  L  + +  VADAVLKD I VHLDNN+DKFNLLIFM QKLFSLIDQTSVPDNPDSL
Sbjct: 352  PVMNELKNDSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSL 411

Query: 361  QNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK 420
            QN +VLLPG LITLYLKEKLEDWLQK ++LL DEI   SK F+F  +  VKKVMDKN  K
Sbjct: 412  QNHEVLLPGHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPK 471

Query: 421  QVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480
            QVS+AVENMLKTGRLVTQTGLDLQQRAG+TVQAERLNFLRF+SHFRAVHRGASFAGLRTT
Sbjct: 472  QVSTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTT 531

Query: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVL 540
            TVRKLLPESWGFLCPVHTPDGEPCGLLNH+T T RITS F+SQG ++D++KI+ SIL+VL
Sbjct: 532  TVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVL 591

Query: 541  IAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDL 600
            + VGM PSLPK+   G P+ L VLLDG +VG I+S+EVEK+VAH+R LKV S  VIPDD+
Sbjct: 592  LEVGMTPSLPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDM 651

Query: 601  EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG 660
            EVGYVPLS+ GAYPGLYL TSPSRFVRPV+N+SI+ + + NIELIGPFEQVFMEIRCPDG
Sbjct: 652  EVGYVPLSMGGAYPGLYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDG 711

Query: 661  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 720
            GDGGRK  FPATHEEIHPT MLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFS Q I++
Sbjct: 712  GDGGRKSSFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQH 771

Query: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780
            RADQKLYHLQTPQTPIVRTSTYTKYNIDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSVE
Sbjct: 772  RADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 831

Query: 781  RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP 840
            RGMFHGQIYQTETIDL++QG RS RS +MFR+SNI+ S    ID+DGLP+VGQMI+PDEP
Sbjct: 832  RGMFHGQIYQTETIDLTEQGGRSDRSSRMFRKSNIEKSACPSIDSDGLPHVGQMIRPDEP 891

Query: 841  YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR 900
            YCSIY+EV  +  T+K KGSEAV VDYV+ DVKNK + QKVNIRFR PRNP+IGDKFSSR
Sbjct: 892  YCSIYNEVTSSIHTLKRKGSEAVYVDYVAADVKNKKHLQKVNIRFRHPRNPVIGDKFSSR 951

Query: 901  HGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV 960
            HGQKGVCSQLWPDVDMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAKGG L GEFV
Sbjct: 952  HGQKGVCSQLWPDVDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFV 1011

Query: 961  NATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI 1020
            +ATPFRSSV K ++G+ ++   +LVD+LG  L +KGFNYHGLEVLYSGVYGTELTCEIFI
Sbjct: 1012 DATPFRSSVTK-DSGESDSKSGSLVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFI 1071

Query: 1021 GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL 1080
            GPVYYQRLRHMVSDK+QVRSTGT+DQVTRQPIKGRK+GGGIRFGEMERDS+LAHGA+YLL
Sbjct: 1072 GPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1131

Query: 1081 HDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG 1140
            HDRLHTCSD+HIADVCSLCGS+L ++F+QP KR VREIGGLPPG+APK+VTCHAC+TSKG
Sbjct: 1132 HDRLHTCSDYHIADVCSLCGSMLATTFIQPQKRPVREIGGLPPGRAPKKVTCHACQTSKG 1191

Query: 1141 METVAMPYVFKYLAAELAAMNIKMTLQLSSGA 1173
            METVAMPYVF+YLAAELAAMNIKMTL+LS GA
Sbjct: 1192 METVAMPYVFRYLAAELAAMNIKMTLKLSDGA 1222

BLAST of Cucsa.005050 vs. TrEMBL
Match: A0A059BJ30_EUCGR (DNA-directed RNA polymerase subunit beta OS=Eucalyptus grandis GN=EUGRSUZ_G03213 PE=3 SV=1)

HSP 1 Score: 1914.4 bits (4958), Expect = 0.0e+00
Identity = 925/1163 (79.54%), Postives = 1037/1163 (89.17%), Query Frame = 1

Query: 10   DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKE 69
            DY ALRELFRHHIESFDHLVD GLET+++ IKPV+I+D  ++K L+IW  KPE+Y PQKE
Sbjct: 10   DYGALRELFRHHIESFDHLVDRGLETMLDKIKPVQIFDPSSDKTLKIWFAKPEVYQPQKE 69

Query: 70   RNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHL 129
             + +T  +ALLP+ECRQAK SY GKF+  + FQYD+K  + EKFNFG  PIMLKSKLC+L
Sbjct: 70   GSSKTSHDALLPFECRQAKTSYAGKFVVHLYFQYDDKVAVHEKFNFGHLPIMLKSKLCYL 129

Query: 130  RGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDK 189
             G DP+KLVS+ EE+SEMGGYF++NGLERVVRLLI PKRNYP SMVRNSF DRREGYTDK
Sbjct: 130  NGADPQKLVSWKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDK 189

Query: 190  AVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASL 249
            AVVIRCVREDQSSVTVKLYYL+NGSARLGFW+Q +EYLLP+GVVLKALIDT DHEIY+SL
Sbjct: 190  AVVIRCVREDQSSVTVKLYYLQNGSARLGFWIQAREYLLPVGVVLKALIDTNDHEIYSSL 249

Query: 250  TSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKE 309
            TSCYS+K+G+ KG VG QLV ERAKIILDE+RDL LF  RQCL HIG+HFQPVM+GL  E
Sbjct: 250  TSCYSEKYGRGKGVVGNQLVSERAKIILDELRDLTLFTRRQCLQHIGEHFQPVMDGLENE 309

Query: 310  KFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPG 369
             F +VA+AVL+DYIFVHL+NNYDKFNLLIFM QKLFSLIDQTS PDNPDSLQNQ+VLLPG
Sbjct: 310  SFISVANAVLQDYIFVHLNNNYDKFNLLIFMVQKLFSLIDQTSSPDNPDSLQNQEVLLPG 369

Query: 370  QLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENM 429
             LIT+YLK+KLEDWLQK KKLL+DE+ N +KNF+F SLAHVKKVMDKNP +Q+ SA+ENM
Sbjct: 370  HLITIYLKDKLEDWLQKAKKLLQDELKNKAKNFDFSSLAHVKKVMDKNPGRQIGSAIENM 429

Query: 430  LKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPES 489
            LKTGRLVTQ+GLDLQQRAG+TVQAERLNFLRF+SHFRAVHRGASFAGLRTT+VRKLLPES
Sbjct: 430  LKTGRLVTQSGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPES 489

Query: 490  WGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSL 549
            WGFLCPVHTPDGEPCGLLNH+T TCRITS F+S+G  RDF KIRTSIL+VLI +GM PSL
Sbjct: 490  WGFLCPVHTPDGEPCGLLNHMTCTCRITSFFDSKGNFRDFVKIRTSILNVLIGIGMTPSL 549

Query: 550  PKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSI 609
            PK+VQ G PD L+VLLDGR+VG I S EVEK V++LRRLK+ +   IPDDLEVGYVPLS 
Sbjct: 550  PKIVQAGPPDVLSVLLDGRVVGSIPSAEVEKAVSYLRRLKLSTTSGIPDDLEVGYVPLSF 609

Query: 610  SGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEF 669
             GAYPGLYLFT+PSRF RPV+N+S   + + NIELIGPFEQVFMEIRCPDGGDGGR++EF
Sbjct: 610  GGAYPGLYLFTNPSRFARPVRNISAPVDGSQNIELIGPFEQVFMEIRCPDGGDGGRRNEF 669

Query: 670  PATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHL 729
            PATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFS QAI +RADQKLYHL
Sbjct: 670  PATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQAIHFRADQKLYHL 729

Query: 730  QTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIY 789
            QTPQTPIVRT  YTKY IDE+PTGTNAIVAVLAY+GYDMEDAMILNKSSVERGMFHGQIY
Sbjct: 730  QTPQTPIVRTGAYTKYCIDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVERGMFHGQIY 789

Query: 790  QTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVA 849
            QTETIDLS+Q ++S R Q+MFRRSN D S    ID+DGLPYVGQMI+P+EPYCS+Y+EV 
Sbjct: 790  QTETIDLSEQSSKSDREQRMFRRSNTDKSAHPWIDSDGLPYVGQMIRPNEPYCSVYNEVT 849

Query: 850  GTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQ 909
             TT+    KGSE+ IVDYV+VD K K   QK NIRFR PRNP+IGDKFSSRHGQKGVCSQ
Sbjct: 850  TTTKNHLRKGSESAIVDYVAVDTKTKKGLQKANIRFRHPRNPVIGDKFSSRHGQKGVCSQ 909

Query: 910  LWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV 969
            LWPDVDMPF G TGMRPDLIINPHAFPSRMTIAML+ES+AAK G L+GEFV+ATPF SS 
Sbjct: 910  LWPDVDMPFSGITGMRPDLIINPHAFPSRMTIAMLLESIAAKVGSLDGEFVDATPFASST 969

Query: 970  NKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLR 1029
             K N G+E++  E LVD++G+ L KKGFNYHG+EVLYSGVYGTELTCEIFIGPVYYQRLR
Sbjct: 970  KKAN-GEEKSESELLVDQIGAKLRKKGFNYHGVEVLYSGVYGTELTCEIFIGPVYYQRLR 1029

Query: 1030 HMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSD 1089
            HMVSDK+QVRSTGTVDQVTRQPIKGRK+GGGIRFGEMERDSM+AHGA+YLLHDRLHTCSD
Sbjct: 1030 HMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMVAHGAAYLLHDRLHTCSD 1089

Query: 1090 HHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYV 1149
            +HIADVCSLCGS+LT+ FVQP +R  REIGGLPP +APK+VTCHAC+TS+GMETVAMPYV
Sbjct: 1090 YHIADVCSLCGSILTTQFVQPQRRPGREIGGLPPIRAPKKVTCHACQTSRGMETVAMPYV 1149

Query: 1150 FKYLAAELAAMNIKMTLQLSSGA 1173
            F+YLAAELAAMNIKMTL LS+GA
Sbjct: 1150 FRYLAAELAAMNIKMTLHLSNGA 1171

BLAST of Cucsa.005050 vs. TrEMBL
Match: K7MME1_SOYBN (DNA-directed RNA polymerase subunit beta OS=Glycine max GN=GLYMA_17G183400 PE=3 SV=1)

HSP 1 Score: 1911.7 bits (4951), Expect = 0.0e+00
Identity = 930/1172 (79.35%), Postives = 1045/1172 (89.16%), Query Frame = 1

Query: 1    MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60
            MVVK     D+EALRELF+HHIESFD++ DAGLET++  IKP+E++D FT+ KLRIWL  
Sbjct: 1    MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDN 60

Query: 61   PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120
            P LYPPQKER  RT+REALLP+ECRQAKISY GK   DVCFQY++  +IRE  NFGQFPI
Sbjct: 61   PVLYPPQKERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPI 120

Query: 121  MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS 180
            ML+SKLC+LRG DP+KLVSY EEASEMGGYF++NGLERV+RLLI PKRN+P SMVRNSFS
Sbjct: 121  MLQSKLCNLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFS 180

Query: 181  DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT 240
            DRREGYTDKA+VIRCVR DQSS++V+LYYLRNGSARLGFW++G+EYLLP+G++LKALIDT
Sbjct: 181  DRREGYTDKAIVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDT 240

Query: 241  TDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQ 300
            TD EIY +LTSCY++K+ K KGAVGTQLVGERAKIILDE+RDL+LF   QCL++IG+HFQ
Sbjct: 241  TDREIYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQ 300

Query: 301  PVMEGLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL 360
            PV+  L  + +  VA+AVLKD I VHLDNN+DKFNLLIFM QKLFSLIDQTSVPDNPDSL
Sbjct: 301  PVITELKNDSYPIVAEAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSL 360

Query: 361  QNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK 420
            QN +VLLPG LITLYLKEKLEDWLQK K+LL DEI   SK F+F  +  VKKVMDKN  K
Sbjct: 361  QNHEVLLPGHLITLYLKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPK 420

Query: 421  QVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480
            QVS+AVENMLKTGRLVTQTGLDLQQRAG+TVQAERLNFLRFVSHFRAVHRGASFAGLRTT
Sbjct: 421  QVSTAVENMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480

Query: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVL 540
            TVRKLLPESWGFLCPVHTPDGEPCGLLNH+T T RITS F+SQG V+D++KI+ SIL+VL
Sbjct: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVL 540

Query: 541  IAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDL 600
            + VGM PSLPK+   G P+ L VLLDG +VG I+S+E EK+VAH+R LKV S  VIPDD+
Sbjct: 541  LEVGMTPSLPKIFLPGPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDM 600

Query: 601  EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG 660
            EVGYVPLS+ GAYPGLYL TSPSRFVRPV+N+SI    + NIE IGPFEQVFMEIRCPDG
Sbjct: 601  EVGYVPLSMGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDG 660

Query: 661  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 720
            GDGGRK  FPATHEEIHPT MLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFS Q I++
Sbjct: 661  GDGGRKSSFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQH 720

Query: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780
            RADQKLYHLQTPQTPIVRTSTYTKYNIDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSVE
Sbjct: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780

Query: 781  RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP 840
            RGMFHGQIYQTETIDL++QG R  RS +MFR+SN++ S    ID+DGLP+VGQMI+PDEP
Sbjct: 781  RGMFHGQIYQTETIDLTEQGGRLDRSSRMFRKSNLEKSACPSIDSDGLPHVGQMIRPDEP 840

Query: 841  YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR 900
            YCSIY+EV  +  T+K KGSEAV VDYV+VDVKNK + QKVNIRFR PRNP+IGDKFSSR
Sbjct: 841  YCSIYNEVTSSIHTLKRKGSEAVYVDYVAVDVKNKKHLQKVNIRFRHPRNPVIGDKFSSR 900

Query: 901  HGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV 960
            HGQKGVCSQLWPDVDMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAKGG L GEFV
Sbjct: 901  HGQKGVCSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLRGEFV 960

Query: 961  NATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI 1020
            +ATPFRSSV K ++G+ ++   ++VD+LG  L +KGFNYHGLEVLYSGVYGTELTCEIFI
Sbjct: 961  DATPFRSSVKK-DSGESDSMSGSIVDDLGLLLREKGFNYHGLEVLYSGVYGTELTCEIFI 1020

Query: 1021 GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL 1080
            GPVYYQRLRHMVSDK+QVRSTGT+DQVTRQPIKGRK+GGGIRFGEMERDS+LAHGA+YLL
Sbjct: 1021 GPVYYQRLRHMVSDKFQVRSTGTIDQVTRQPIKGRKRGGGIRFGEMERDSLLAHGAAYLL 1080

Query: 1081 HDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG 1140
            HDRLHTCSD+HIADVCSLCGS+LT++F QP KR VREIGGLPPG+APK+VTCHAC+TSKG
Sbjct: 1081 HDRLHTCSDYHIADVCSLCGSMLTTTFTQPQKRPVREIGGLPPGRAPKKVTCHACQTSKG 1140

Query: 1141 METVAMPYVFKYLAAELAAMNIKMTLQLSSGA 1173
            METVAMPYVF+YLAAELAAMNIKMTL+LS GA
Sbjct: 1141 METVAMPYVFRYLAAELAAMNIKMTLKLSDGA 1171

BLAST of Cucsa.005050 vs. TAIR10
Match: AT1G29940.1 (AT1G29940.1 nuclear RNA polymerase A2)

HSP 1 Score: 1712.2 bits (4433), Expect = 0.0e+00
Identity = 831/1163 (71.45%), Postives = 984/1163 (84.61%), Query Frame = 1

Query: 9    EDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQK 68
            ED++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L IWL  P ++ PQK
Sbjct: 14   EDFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFAPQK 73

Query: 69   ERNLRTIR-EALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLC 128
            E    T R E LLP+ECRQAKISYTG FMADVCF+Y++  V+R+KF+FGQFPIML SKLC
Sbjct: 74   ESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLC 133

Query: 129  HLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYT 188
             L+G D +KL+   E  SEMGGYF++NG+ERV R +IAPKRN+PTSM+RNSF DR+EGY+
Sbjct: 134  SLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYS 193

Query: 189  DKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYA 248
             KAVV RCVR+DQSSVTVKLYYLRNGSAR+GFW+ G+EYLLP+G+VLKAL ++ D EIY 
Sbjct: 194  SKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYE 253

Query: 249  SLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLG 308
            SL  CYS+ +G+  GA+GTQLV ERAKIILDEVRDL LF   QC  H+GQHFQPV++G+ 
Sbjct: 254  SLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVK 313

Query: 309  KEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLL 368
            KE  S VA+AVL+DY+FVHLDN++DKFNLLIF+ QKL+SL+DQTS+PDNPDSLQNQ++L+
Sbjct: 314  KESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILV 373

Query: 369  PGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVE 428
            PG +IT+YLKEKLE+WL+K K LL+DE+ N +  F F SLA VKK+++KNP + + +++E
Sbjct: 374  PGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIE 433

Query: 429  NMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLP 488
             +LKTG L TQ+GLDLQQRAG+TVQAERLNFLRF+S FRAVHRGASFAGLRTTTVRKLLP
Sbjct: 434  TLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLP 493

Query: 489  ESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIP 548
            ESWGFLCPVHTPDG PCGLLNH+T T RITS F+S+G +RDF KIR S++ VL   GM+P
Sbjct: 494  ESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVP 553

Query: 549  SLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPL 608
            SLPKLV+ G P  ++VLLDG++VG +SSN V K+V+++RRLKV +P VIP+DLEVGYVP 
Sbjct: 554  SLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPT 613

Query: 609  SISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKD 668
            S+ G+YPGLYL + P+RF+RPVKN+SI P D  NIELIGPFEQVFMEI CPDGG+GGR +
Sbjct: 614  SMGGSYPGLYLASCPARFIRPVKNISI-PSD--NIELIGPFEQVFMEISCPDGGNGGRNN 673

Query: 669  EFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLY 728
               ATHEEIHPTGM+SVVANLTPWSDHNQSPRNMYQCQMAKQTMA+S QA+++RADQK+Y
Sbjct: 674  SSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIY 733

Query: 729  HLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 788
            HLQTPQ+P+VRT TYT Y+IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSVERGM HGQ
Sbjct: 734  HLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQ 793

Query: 789  IYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDE 848
            IYQTE IDLSDQ +R     K FRRS  + +    IDADGLP VGQ + PDEPYCSIYDE
Sbjct: 794  IYQTENIDLSDQNSRFDSGSKSFRRST-NKAEHFRIDADGLPSVGQKLYPDEPYCSIYDE 853

Query: 849  VAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVC 908
            V   TR MK KG++ VIVD+VSVD+K+K +PQ+ NIRFR  RNP+IGDKFSSRHGQKGVC
Sbjct: 854  VTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVC 913

Query: 909  SQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRS 968
            SQLWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ES+AAKGG L+G+FV+ATPFR 
Sbjct: 914  SQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRD 973

Query: 969  SVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQR 1028
            +V KTN G+EE+    LVD+LGS L +KGFN++G E LYSG  G EL CEIF+GPVYYQR
Sbjct: 974  AVKKTN-GEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQR 1033

Query: 1029 LRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTC 1088
            LRHMVSDK+QVRSTG VDQ+T QPIKGRK+GGGIRFGEMERDS+LAHGASYLLHDRLHT 
Sbjct: 1034 LRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTS 1093

Query: 1089 SDHHIADVCSLCGSVLTSSFVQ-PPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAM 1148
            SDHHIADVCSLCGS+LTSS V    K+ ++EIG LPPG+ PK+VTC++CKTSKGMETVAM
Sbjct: 1094 SDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAM 1153

Query: 1149 PYVFKYLAAELAAMNIKMTLQLS 1170
            PYVF+YLAAELA+MNIKMTLQLS
Sbjct: 1154 PYVFRYLAAELASMNIKMTLQLS 1171

BLAST of Cucsa.005050 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2)

HSP 1 Score: 425.2 bits (1092), Expect = 1.3e-118
Identity = 348/1234 (28.20%), Postives = 575/1234 (46.60%), Query Frame = 1

Query: 4    KFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPV------EIYDSFTNKKLRIW 63
            KF    ++  +R L + H++SF++ ++ G+  ++ +   +       IY  F  KK+R+ 
Sbjct: 32   KFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRF--KKVRV- 91

Query: 64   LGKPELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQY----DEKAVIREKF 123
             G+P +       N+ T+ E + P+ CR A ++Y      ++ + +    ++    ++  
Sbjct: 92   -GEPSII------NVNTV-ENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNV 151

Query: 124  NFGQFPIMLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTS 183
              G+ PIML+S  C L G D ++L    E   + GGYF++ G E+V+ +     +N    
Sbjct: 152  IIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKN---- 211

Query: 184  MVRNSFSDRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVV 243
              R      ++G  + +V         + +T     ++    ++  ++      +PI +V
Sbjct: 212  --RIIIDSDKKGNINASVT------SSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIV 271

Query: 244  LKALIDTTDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKII------LDEVRDLALFD 303
            LKA+   +D EI                     Q+VG   +        ++E     +  
Sbjct: 272  LKAMGMESDQEI--------------------VQMVGRDPRFSASLLPSIEECVSEGVNT 331

Query: 304  HRQCLDHIGQHFQPVMEGLGKEKFSTVADAVLKDYIFVHL---DNNYDK--FNLLIFMAQ 363
             +Q LD++    + +  G   EK    A ++L+D    H+   DNN+ +  F + + + +
Sbjct: 332  QKQALDYLEAKVKKISYGTPPEKDGR-ALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRR 391

Query: 364  KLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNF 423
             + +++++ ++ D+ D + N+ + L GQLI+L  ++  +  L +  K ++  ++ P +  
Sbjct: 392  MIEAMLNKDAM-DDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRAS 451

Query: 424  EFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFV 483
             F       + ++K+    +S  +E  L TG    +       R G T    RL+F+  +
Sbjct: 452  RF----DFSQCLNKDSRYSISLGLERTLSTGNFDIKRFR--MHRKGMTQVLTRLSFIGSM 511

Query: 484  SHFRAVHRGASFAGLRTTT-VRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFN 543
                 +     F   R  +  R L P  WG LCP  TP+GE CGL+ +L     +T+   
Sbjct: 512  GFITKI--SPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEE 571

Query: 544  SQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKI 603
                V   YK+  + L VL A           ++  PD   V+L+G I+G    +  +  
Sbjct: 572  EGPLVAMCYKLGVTDLEVLSAE----------ELHTPDSFLVILNGLILG--KHSRPQYF 631

Query: 604  VAHLRRLKVLSP-------------HVIPDDLEVGYV--PLSISGA-------------Y 663
               LRRL+                 H +    +VG V  PL I+                
Sbjct: 632  ANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQ 691

Query: 664  PGLYLFTSPSRFVRP--VKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPA 723
             G+  F     F+R   ++ L ++ E+N  I L        ++    +G +  + D    
Sbjct: 692  DGVRTFDD---FIRDGLIEYLDVNEENNALIALYESDGTTELD----EGAEAAKAD---T 751

Query: 724  THEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQT 783
            TH EI P  +L VVA L P+  HNQSPRN YQC M KQ M         R D  LY L  
Sbjct: 752  THIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVY 811

Query: 784  PQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQT 843
            PQ P++ T T      D+   G NA VAV++++GYD+EDA+++NKSS++RG F   I   
Sbjct: 812  PQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRG-FGRCIVMK 871

Query: 844  ETIDLSDQGNRSSRSQKMF-RRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAG 903
            + + +S + +  +  + +  +R+  D     I+D DGL   G++I+P++ Y +    V  
Sbjct: 872  KIVAMSQKYDNCTADRILIPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDT 931

Query: 904  TTR-TMKLKGS--------------EAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGD 963
             T+ T  L  S              E  +VD V++   +K     +    R  R P +GD
Sbjct: 932  VTKFTSALSDSQYRPAREYFKGPEGETQVVDRVAL-CSDKKGQLCIKYIIRHTRRPELGD 991

Query: 964  KFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCL 1023
            KFSSRHGQKGVC  +    D PF    G+ PDLI+NPH FPSRMT+  ++E + +K G  
Sbjct: 992  KFSSRHGQKGVCGIIIQQEDFPF-SELGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVS 1051

Query: 1024 NGEFVNATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELT 1083
             G F   + F           E +     V+ + +TL++KGF+Y G ++LYSG+ G  + 
Sbjct: 1052 CGRFHYGSAF----------GERSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVE 1111

Query: 1084 CEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHG 1143
              IF+GP+YYQ+L+HMV DK   R +G    +TRQP +G+ K GG+R GEMERD ++A+G
Sbjct: 1112 AYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYG 1159

Query: 1144 ASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHAC 1170
            AS L+++RL   SD     VC  CG  L   +    K+AV                C  C
Sbjct: 1172 ASMLIYERLMISSDPFEVQVCRACG--LLGYYNYKLKKAV----------------CTTC 1159

BLAST of Cucsa.005050 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 357.8 bits (917), Expect = 2.5e-98
Identity = 341/1242 (27.46%), Postives = 522/1242 (42.03%), Query Frame = 1

Query: 17   LFRHHIESFDHLVDAGLETLMNSIKPVEI----------YDSFTNKKLRIWLGKPELYPP 76
            L R  ++SFD  +   ++ +++    +EI             F     +I  G+  L  P
Sbjct: 39   LVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKP 98

Query: 77   QK-ERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIRE---------KFNFG 136
               E +  T    L P   R   ++Y+     DV  +  +K    E         K   G
Sbjct: 99   MMTESDGETA--TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIG 158

Query: 137  QFPIMLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVR 196
            + PIML+S  C L     K L    E   + GGYF++NG E+V   LIA ++     +  
Sbjct: 159  KVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKV---LIAQEKMSTNHVY- 218

Query: 197  NSFSDRREGYTDKAVVIRCVREDQS--SVTVKLYYLRNGSARLGFWVQGKEYL------- 256
              F  R+         +R + E+Q+    T+ +  L   SA+ G      +Y+       
Sbjct: 219  -VFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGG---SSGQYIRCTLPYI 278

Query: 257  ---LPIGVVLKALIDTTDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLA 316
               +PI +V +AL    D +I   +   ++D          TQ++ E  +  L+E     
Sbjct: 279  RTEIPIIIVFRALGFVADKDILEHICYDFAD----------TQMM-ELLRPSLEEA--FV 338

Query: 317  LFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADAVLKDYIFVHL----DNNYDKFNLLIFM 376
            + +    LD+IG+    V  G+ KEK    A  +L+  +  H+         K     ++
Sbjct: 339  IQNQLVALDYIGKRGATV--GVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYI 398

Query: 377  AQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSK 436
              +L          D+ D   N+ + L G L+    +       + V+  ++  + N  +
Sbjct: 399  IHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKE 458

Query: 437  -NFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFL 496
             N +F   A           K ++S ++  L TG            RAG +    RL + 
Sbjct: 459  VNLQFAIKA-----------KTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYA 518

Query: 497  RFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRIT-- 556
              +SH R ++      G +    R+L    WG +CP  TP+G+ CGL+ +L     IT  
Sbjct: 519  STLSHLRRLNSPIGREG-KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVG 578

Query: 557  ------SHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGLPDFLNVLLDGRIVG 616
                    F  +    +F +I  S+                    +P    + ++G  VG
Sbjct: 579  SAAYPILEFLEEWGTENFEEISPSV--------------------IPQATKIFVNGMWVG 638

Query: 617  YISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLYLFTSPSRFVRPV-- 676
                 + + +V  LRRL+      +  + EVG V          L ++T   R  RP+  
Sbjct: 639  V--HRDPDMLVKTLRRLR----RRVDVNTEVGVVR---DIRLKELRIYTDYGRCSRPLFI 698

Query: 677  ---KNLSISPEDNHN--------------------IELIGPFEQ--VFMEIRCPDGGDGG 736
               + L I   D +                     IE I   E+    + +   D     
Sbjct: 699  VDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQAR 758

Query: 737  RKDEFP----ATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 796
             + E       TH EIHP+ +L V A++ P+ DHNQSPRN YQ  M KQ M   +   ++
Sbjct: 759  LRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQF 818

Query: 797  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 856
            R D   Y L  PQ P+V T      +  + P G NAIVA+  Y+GY+ ED++I+N+SS++
Sbjct: 819  RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSID 878

Query: 857  RGMFHGQIYQT--------ETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVG 916
            RG F    +++         T+   D G     S    R  + D      +D DGL   G
Sbjct: 879  RGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDK-----LDDDGLAPPG 938

Query: 917  QMIQPDEPYCS-----IYDEVAGTT-------RTMKLKGSEAVIVDYVSVDVKNKNNPQK 976
              +  ++           DE  G +        ++ L+ SE  +VD V +   N +  + 
Sbjct: 939  TRVSGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLL-TTNADGLRF 998

Query: 977  VNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMT 1036
            V +R R  R P IGDKFSSRHGQKG     +   DMP+    G+ PD+I+NPHA PSRMT
Sbjct: 999  VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-IEGVTPDIIVNPHAIPSRMT 1058

Query: 1037 IAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYH 1096
            I  L+E +  K     G+  +ATPF                +  VD +   L K G+   
Sbjct: 1059 IGQLIECIMGKVAAHMGKEGDATPFT---------------DVTVDNISKALHKCGYQMR 1118

Query: 1097 GLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGG 1156
            G E +Y+G  G  LT  IF+GP YYQRL+HMV DK   R  G V  +TRQP +GR + GG
Sbjct: 1119 GFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 1172

Query: 1157 IRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGG 1163
            +RFGEMERD M+AHGA++ L +RL   SD +   VC +CG +  ++  +           
Sbjct: 1179 LRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKK----------- 1172

BLAST of Cucsa.005050 vs. TAIR10
Match: AT3G18090.1 (AT3G18090.1 nuclear RNA polymerase D2B)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-76
Identity = 250/876 (28.54%), Postives = 401/876 (45.78%), Query Frame = 1

Query: 316  DAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLY 375
            D  L+ Y+F  L     K   L +M + L S        +N DS +N+ + L G+L+   
Sbjct: 233  DDCLRLYLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLERE 292

Query: 376  LKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRL 435
            ++  L    +K+ + ++ ++S          L  ++  +D   +  +++ +     TG  
Sbjct: 293  IRVHLAHARRKMTRAMQKQLSGDG------DLKPIEHYLD---ASVITNGLNRAFSTGAW 352

Query: 436  VTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 495
             +     +++ +G      R N L+ +   R   +   + G +    R   P  WG +C 
Sbjct: 353  -SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARHPHPSHWGRVCF 412

Query: 496  VHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQM 555
            + TPDGE CGL+ +++    +    ++QG          S++ +L   GM   L      
Sbjct: 413  LSTPDGENCGLVKNMS----LLGLVSTQGL--------ESVVEMLFTCGM-EELMNDTST 472

Query: 556  GLPDFLNVLLDGRIVGYISSNE--VEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAY 615
             L     VLL+G  VG  + +E  V ++ +  R+ ++     I  D +   V +      
Sbjct: 473  PLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRI------ 532

Query: 616  PGLYLFTSPSRFVRP---VKNLSISPEDNHN------------IELIGPFEQVFMEIRCP 675
                 FT   R +RP   V+NL    +D               +ELIG  E+   +    
Sbjct: 533  -----FTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEEEE--DCTTA 592

Query: 676  DGGDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQM-AKQTMAFSLQA 735
             G     K+    TH E+  + +L V   + P+++H+   R +YQ Q   +Q + FS   
Sbjct: 593  WGIKQLLKEPKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTN 652

Query: 736  IRYRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 795
               R D     L  PQ P+ +T        +    G NAIVAV  + GY+ ED++++NK+
Sbjct: 653  PNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKA 712

Query: 796  SVERGMFHGQ---IYQTETIDLSDQGNRSSRSQKM-FRRSNIDTSVRSIIDADGLPYVGQ 855
            S+ERGMF  +    Y+ E +D  D   R    + + F ++         ++ DG P++G 
Sbjct: 713  SLERGMFRSEQIRSYKAE-VDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGA 772

Query: 856  MIQPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMI 915
             +   +       E +G   ++KLK +E  IV  V +   N        +  R+ R+P +
Sbjct: 773  NMSTGDIVIGRCTE-SGADHSIKLKHTERGIVQKVVLS-SNDEGKNFAAVSLRQVRSPCL 832

Query: 916  GDKFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGG 975
            GDKFSS HGQKGV   L    + PF    G+ PD++INPHAFPSR T   L+E+  +KG 
Sbjct: 833  GDKFSSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSKG- 892

Query: 976  CLNGEFVNATPFRSSVNKTNAGDEETNGETL-----VDELGSTLIKKGFNYHGLEVLYSG 1035
                    A P +     + A  + T   T      V E+   L + GF+  G E +Y+G
Sbjct: 893  -------IACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYNG 952

Query: 1036 VYGTELTCEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMER 1095
              G  +   IF+GP +YQRL HM  +K + R+TG V  +TRQP+  RK+ GGIRFGEMER
Sbjct: 953  RSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEMER 1012

Query: 1096 DSMLAHGASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPK 1155
            D ++AHGAS  LH+RL T SD     +C  C +   ++ ++    + R+I G        
Sbjct: 1013 DCLIAHGASANLHERLFTLSDSSQMHICRKCKTY--ANVIERTPSSGRKIRG-------- 1048

Query: 1156 RVTCHACKTSKGMETVAMPYVFKYLAAELAAMNIKM 1165
               C  C +S  +  V +PY  K L  EL +M I +
Sbjct: 1073 -PYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITL 1048

BLAST of Cucsa.005050 vs. TAIR10
Match: AT3G23780.1 (AT3G23780.1 nuclear RNA polymerase D2A)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-75
Identity = 248/869 (28.54%), Postives = 405/869 (46.61%), Query Frame = 1

Query: 316  DAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLY 375
            D  L  Y+F  L +   K   L +M + L +        +N DS +N+ + L G+L+   
Sbjct: 351  DECLHLYLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLERE 410

Query: 376  LKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRL 435
            ++  L    +K+ + ++  +S          L  ++  +D   +  +++ +     TG  
Sbjct: 411  IRVHLAHARRKMTRAMQKHLSGDG------DLKPIEHYLD---ASVITNGLSRAFSTGAW 470

Query: 436  VTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 495
             +     +++ +G      R N L+ +   R   +   + G +    R   P  WG +C 
Sbjct: 471  -SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSHWGRVCF 530

Query: 496  VHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQM 555
            + TPDGE CGL+ +++    +++            +   S++  L A GM   L      
Sbjct: 531  LSTPDGENCGLVKNMSLLGLVST------------QSLESVVEKLFACGM-EELMDDTCT 590

Query: 556  GLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPG 615
             L     VLL+G  VG  + +E    VA L+  +  S   +P ++E+             
Sbjct: 591  PLFGKHKVLLNGDWVGLCADSE--SFVAELKSRRRQSE--LPREMEI-----KRDKDDNE 650

Query: 616  LYLFTSPSRFVRP---VKNLSISPED-----------NHNI-ELIGPFEQVFMEIRCPDG 675
            + +FT   R +RP   V+NL    ++           +H I ELIG  E+   +     G
Sbjct: 651  VRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEE--DCNTAWG 710

Query: 676  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQM-AKQTMAFSLQAIR 735
                 K+    TH E+  + +L V   + P+++H+   R +YQ Q   +Q + FS     
Sbjct: 711  IKQLLKEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPN 770

Query: 736  YRADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 795
             R D     L  PQ P+ +T        +    G NAIVAV  + GY+ ED++++NK+S+
Sbjct: 771  IRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASL 830

Query: 796  ERGMFHGQ---IYQTETIDLSDQGNRSSRSQKM-FRRSNIDTSVRSIIDADGLPYVGQMI 855
            ERGMF  +    Y+ E +D  D   R    + + F +++        ++ DG P++G  +
Sbjct: 831  ERGMFRSEQIRSYKAE-VDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANM 890

Query: 856  QPDEPYCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGD 915
               +       E +G   ++KLK +E  IV  V +   N        +  R+ R+P +GD
Sbjct: 891  STGDIVIGRCTE-SGADHSIKLKHTERGIVQKVVLS-SNDEGKNFAAVSLRQVRSPCLGD 950

Query: 916  KFSSRHGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCL 975
            KFSS HGQKGV   L    + PF    G+ PD++INPHAFPSR T   L+E+  +KG   
Sbjct: 951  KFSSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIAC 1010

Query: 976  NGEFVNATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELT 1035
              +   ++   + + + +A    T G T   E+   L + GF+  G E +Y+G  G  + 
Sbjct: 1011 PIQKEGSSAAYTKLTR-HATPFSTPGVT---EITEQLHRAGFSRWGNERVYNGRSGEMMR 1070

Query: 1036 CEIFIGPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHG 1095
              IF+GP +YQRL HM  DK + R+TG V  +TRQP+  RK+ GGI+FGEMERD ++AHG
Sbjct: 1071 SMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1130

Query: 1096 ASYLLHDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHAC 1155
            AS  LH+RL T SD     +C  C +   ++ ++    + R+I G           C  C
Sbjct: 1131 ASANLHERLFTLSDSSQMHICRKCKTY--ANVIERTPSSGRKIRG---------PYCRVC 1165

Query: 1156 KTSKGMETVAMPYVFKYLAAELAAMNIKM 1165
             +S  +  V +PY  K L  EL +M I +
Sbjct: 1191 VSSDHVVRVYVPYGAKLLCQELFSMGITL 1165

BLAST of Cucsa.005050 vs. NCBI nr
Match: gi|449458081|ref|XP_004146776.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis sativus])

HSP 1 Score: 2368.2 bits (6136), Expect = 0.0e+00
Identity = 1173/1173 (100.00%), Postives = 1173/1173 (100.00%), Query Frame = 1

Query: 1    MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60
            MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK
Sbjct: 1    MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60

Query: 61   PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120
            PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI
Sbjct: 61   PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120

Query: 121  MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS 180
            MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS
Sbjct: 121  MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS 180

Query: 181  DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT 240
            DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT
Sbjct: 181  DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT 240

Query: 241  TDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQ 300
            TDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQ
Sbjct: 241  TDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQ 300

Query: 301  PVMEGLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL 360
            PVMEGLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL
Sbjct: 301  PVMEGLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL 360

Query: 361  QNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK 420
            QNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK
Sbjct: 361  QNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK 420

Query: 421  QVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480
            QVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT
Sbjct: 421  QVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480

Query: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVL 540
            TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVL
Sbjct: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVL 540

Query: 541  IAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDL 600
            IAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDL
Sbjct: 541  IAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDL 600

Query: 601  EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG 660
            EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG
Sbjct: 601  EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG 660

Query: 661  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 720
            GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY
Sbjct: 661  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 720

Query: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780
            RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE
Sbjct: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780

Query: 781  RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP 840
            RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP
Sbjct: 781  RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP 840

Query: 841  YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR 900
            YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR
Sbjct: 841  YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR 900

Query: 901  HGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV 960
            HGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV
Sbjct: 901  HGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV 960

Query: 961  NATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI 1020
            NATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI
Sbjct: 961  NATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI 1020

Query: 1021 GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL 1080
            GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL
Sbjct: 1021 GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL 1080

Query: 1081 HDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG 1140
            HDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG
Sbjct: 1081 HDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG 1140

Query: 1141 METVAMPYVFKYLAAELAAMNIKMTLQLSSGAA 1174
            METVAMPYVFKYLAAELAAMNIKMTLQLSSGAA
Sbjct: 1141 METVAMPYVFKYLAAELAAMNIKMTLQLSSGAA 1173

BLAST of Cucsa.005050 vs. NCBI nr
Match: gi|659089195|ref|XP_008445376.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Cucumis melo])

HSP 1 Score: 2330.8 bits (6039), Expect = 0.0e+00
Identity = 1152/1172 (98.29%), Postives = 1161/1172 (99.06%), Query Frame = 1

Query: 1    MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60
            MVVKF ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK
Sbjct: 1    MVVKFKENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60

Query: 61   PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120
            PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI
Sbjct: 61   PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPI 120

Query: 121  MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFS 180
            MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYP SMVRNSFS
Sbjct: 121  MLKSKLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPMSMVRNSFS 180

Query: 181  DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT 240
            DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT
Sbjct: 181  DRREGYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDT 240

Query: 241  TDHEIYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQ 300
             DHEIYASLTSCYSDKHGKSKGAV TQLVGERAKIILDEVRDLALFD RQCLDHIGQHFQ
Sbjct: 241  NDHEIYASLTSCYSDKHGKSKGAVATQLVGERAKIILDEVRDLALFDRRQCLDHIGQHFQ 300

Query: 301  PVMEGLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL 360
            PVMEGLGKEKFSTVADAVLK+YIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL
Sbjct: 301  PVMEGLGKEKFSTVADAVLKNYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSL 360

Query: 361  QNQDVLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK 420
            QNQDVLLPGQLITLYLKEKLEDWLQK KKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK
Sbjct: 361  QNQDVLLPGQLITLYLKEKLEDWLQKSKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSK 420

Query: 421  QVSSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480
            Q+SSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT
Sbjct: 421  QISSAVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTT 480

Query: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVL 540
            TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITS+FNSQGKVRDFYKIRTSILSVL
Sbjct: 481  TVRKLLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSYFNSQGKVRDFYKIRTSILSVL 540

Query: 541  IAVGMIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDL 600
            IAVGMIPSLPKLVQMG PD LNVLLDGR+VGYISSNEVEK+VAHLRRLKVLSPHVIPDDL
Sbjct: 541  IAVGMIPSLPKLVQMGPPDVLNVLLDGRLVGYISSNEVEKVVAHLRRLKVLSPHVIPDDL 600

Query: 601  EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG 660
            EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG
Sbjct: 601  EVGYVPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDG 660

Query: 661  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 720
            GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY
Sbjct: 661  GDGGRKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRY 720

Query: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780
            RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE
Sbjct: 721  RADQKLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVE 780

Query: 781  RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP 840
            RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP
Sbjct: 781  RGMFHGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEP 840

Query: 841  YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR 900
            YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR
Sbjct: 841  YCSIYDEVAGTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSR 900

Query: 901  HGQKGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV 960
            HGQKGVCSQLWPD+DMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV
Sbjct: 901  HGQKGVCSQLWPDIDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFV 960

Query: 961  NATPFRSSVNKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI 1020
            NATPFRSSV KTNAGD ETN ETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI
Sbjct: 961  NATPFRSSVKKTNAGDGETNAETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFI 1020

Query: 1021 GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL 1080
            GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL
Sbjct: 1021 GPVYYQRLRHMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLL 1080

Query: 1081 HDRLHTCSDHHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG 1140
            HDRLHTCSDHHIADVCSLCGS+LTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG
Sbjct: 1081 HDRLHTCSDHHIADVCSLCGSILTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKG 1140

Query: 1141 METVAMPYVFKYLAAELAAMNIKMTLQLSSGA 1173
            METVAMPYVFKYLAAELAAMNIKMTL+LS+GA
Sbjct: 1141 METVAMPYVFKYLAAELAAMNIKMTLELSNGA 1172

BLAST of Cucsa.005050 vs. NCBI nr
Match: gi|700192552|gb|KGN47756.1| (hypothetical protein Csa_6G400300 [Cucumis sativus])

HSP 1 Score: 2258.0 bits (5850), Expect = 0.0e+00
Identity = 1125/1156 (97.32%), Postives = 1132/1156 (97.92%), Query Frame = 1

Query: 18   FRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERNLRTIRE 77
            FR   +S+   +D+     M S+      D  T   + +WLGKPELYPPQKERNLRTIRE
Sbjct: 106  FRMVSDSWSWTIDSSSMFTMKSM-----IDDLT---VSLWLGKPELYPPQKERNLRTIRE 165

Query: 78   ALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRGLDPKKL 137
            ALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRGLDPKKL
Sbjct: 166  ALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRGLDPKKL 225

Query: 138  VSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAVVIRCVR 197
            VSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAVVIRCVR
Sbjct: 226  VSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAVVIRCVR 285

Query: 198  EDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLTSCYSDKH 257
            EDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLTSCYSDKH
Sbjct: 286  EDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASLTSCYSDKH 345

Query: 258  GKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADA 317
            GKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADA
Sbjct: 346  GKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKEKFSTVADA 405

Query: 318  VLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLK 377
            VLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLK
Sbjct: 406  VLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPGQLITLYLK 465

Query: 378  EKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVT 437
            EKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVT
Sbjct: 466  EKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENMLKTGRLVT 525

Query: 438  QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVH 497
            QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVH
Sbjct: 526  QTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVH 585

Query: 498  TPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGL 557
            TPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGL
Sbjct: 586  TPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSLPKLVQMGL 645

Query: 558  PDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLY 617
            PDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLY
Sbjct: 646  PDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSISGAYPGLY 705

Query: 618  LFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIH 677
            LFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIH
Sbjct: 706  LFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEFPATHEEIH 765

Query: 678  PTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIV 737
            PTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIV
Sbjct: 766  PTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHLQTPQTPIV 825

Query: 738  RTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLS 797
            RTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLS
Sbjct: 826  RTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQTETIDLS 885

Query: 798  DQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKL 857
            DQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKL
Sbjct: 886  DQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAGTTRTMKL 945

Query: 858  KGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMP 917
            KGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMP
Sbjct: 946  KGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQLWPDVDMP 1005

Query: 918  FCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDE 977
            FCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDE
Sbjct: 1006 FCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSVNKTNAGDE 1065

Query: 978  ETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQ 1037
            ETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQ
Sbjct: 1066 ETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLRHMVSDKYQ 1125

Query: 1038 VRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCS 1097
            VRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCS
Sbjct: 1126 VRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSDHHIADVCS 1185

Query: 1098 LCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAEL 1157
            LCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAEL
Sbjct: 1186 LCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYVFKYLAAEL 1245

Query: 1158 AAMNIKMTLQLSSGAA 1174
            AAMNIKMTLQLSSGAA
Sbjct: 1246 AAMNIKMTLQLSSGAA 1253

BLAST of Cucsa.005050 vs. NCBI nr
Match: gi|731414305|ref|XP_010659083.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X2 [Vitis vinifera])

HSP 1 Score: 1951.4 bits (5054), Expect = 0.0e+00
Identity = 943/1163 (81.08%), Postives = 1052/1163 (90.46%), Query Frame = 1

Query: 10   DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKE 69
            DYE LRELF+HHI+SFDHLV+ GLETL+ S+KPVE+ DSFT +KLRIW G+PELYPPQKE
Sbjct: 7    DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKLRIWFGQPELYPPQKE 66

Query: 70   RNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHL 129
            R+ RT+R+AL P+ECRQAKISY+GK +ADVCFQY     IREKFN GQFPIMLKSKLCHL
Sbjct: 67   RSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHL 126

Query: 130  RGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDK 189
            RG DP+KLVS  EE+SEMGGYF++NGLERVVRLLI PKRNYP SMVRNSF DRREGYTDK
Sbjct: 127  RGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDK 186

Query: 190  AVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASL 249
            AVVIRCVREDQS+VTVKLYYLRNGSARLGFW+QG+EYLLP+GVVLKALIDTTDHEIY SL
Sbjct: 187  AVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESL 246

Query: 250  TSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKE 309
            T CYS+K+   KGAVGTQLVGER KIILDEVRDL+LF   QCL HIG+HFQ VM+GL  E
Sbjct: 247  TCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENE 306

Query: 310  KFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPG 369
             +S VADAVL++YIFVHLDNNYDKFNLLIFM QKLFSLIDQTSVPDNPD LQNQ+VLLPG
Sbjct: 307  SYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPG 366

Query: 370  QLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENM 429
             LIT+YLKEKL++WL K ++LL+DEI N  KNFEF SLAHVKKVMDKNPS+Q+S AVENM
Sbjct: 367  HLITIYLKEKLQEWLYKARRLLQDEI-NKRKNFEFSSLAHVKKVMDKNPSRQISLAVENM 426

Query: 430  LKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPES 489
            LKTGRLVTQ+GLDLQQRAG TVQAERLNFLRF+SHFRAVHRGASFAGLRTT+VRKLLPE+
Sbjct: 427  LKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEA 486

Query: 490  WGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSL 549
            WGFLCPVHTPDGEPCGLLNH+ STCRITS+F+S+G  RDF+KIR SILSVLI +GM P+L
Sbjct: 487  WGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPAL 546

Query: 550  PKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSI 609
            PKLVQ G P+ L+V+LDGR+VG I S+EVE  V HLRRLKV +  VIPDDLEVGY+PLS+
Sbjct: 547  PKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSM 606

Query: 610  SGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEF 669
             GAYPGLYLFTSPSRFVRPV+N+SI  E+ H+IELIGPFEQV+MEIRCPDG DGGR++ F
Sbjct: 607  GGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIF 666

Query: 670  PATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHL 729
            PATHEEIHPTGMLSVVA+LTPWSDHNQSPRNMYQCQM KQTMAFS QAI  RADQKLYHL
Sbjct: 667  PATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHL 726

Query: 730  QTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIY 789
            QTPQTPIVRTS Y KY++DE+PTGTNAIVAVLAY+GYDMEDAMILNKSSV+RG+ HGQIY
Sbjct: 727  QTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIY 786

Query: 790  QTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVA 849
            QTETIDLSD+ N+S R Q+MFRRSN+D S  S+ID+DGLPYVGQMI P+EPYCSIY+EV 
Sbjct: 787  QTETIDLSDENNKSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVT 846

Query: 850  GTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQ 909
             +TR  KLKGSE VIVDYV++D KNK +PQKVNIRFRRPRNP+IGDKFSSRHGQKGVCSQ
Sbjct: 847  SSTRATKLKGSEPVIVDYVALDAKNKKHPQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQ 906

Query: 910  LWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV 969
            LWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAKGG L+G+FV+ATPF  S+
Sbjct: 907  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSDSL 966

Query: 970  NKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLR 1029
             K N G+  +   +LVDELGS L   GFNYHG+EVLYSG YGTELTCEIFIGPVYYQRLR
Sbjct: 967  RKAN-GEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLR 1026

Query: 1030 HMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSD 1089
            HMVSDK+QVRSTGTVDQVTRQPIKGRK+GGGIRFGEMERDSMLAHGA+YLLHDRLHTCSD
Sbjct: 1027 HMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSD 1086

Query: 1090 HHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYV 1149
            HHIADVCSLCGS+LT+S +QP KRAVREIGGLPPG+APK+VTCHAC+TSKGMETV+MPY+
Sbjct: 1087 HHIADVCSLCGSILTTSIIQPQKRAVREIGGLPPGRAPKKVTCHACQTSKGMETVSMPYI 1146

Query: 1150 FKYLAAELAAMNIKMTLQLSSGA 1173
            F++LAAELAAMNIKMTLQLS+GA
Sbjct: 1147 FRFLAAELAAMNIKMTLQLSNGA 1167

BLAST of Cucsa.005050 vs. NCBI nr
Match: gi|731414303|ref|XP_010659082.1| (PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X1 [Vitis vinifera])

HSP 1 Score: 1951.4 bits (5054), Expect = 0.0e+00
Identity = 943/1163 (81.08%), Postives = 1052/1163 (90.46%), Query Frame = 1

Query: 10   DYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKE 69
            DYE LRELF+HHI+SFDHLV+ GLETL+ S+KPVE+ DSFT +KLRIW G+PELYPPQKE
Sbjct: 16   DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVEVVDSFTKQKLRIWFGQPELYPPQKE 75

Query: 70   RNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHL 129
            R+ RT+R+AL P+ECRQAKISY+GK +ADVCFQY     IREKFN GQFPIMLKSKLCHL
Sbjct: 76   RSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHL 135

Query: 130  RGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDK 189
            RG DP+KLVS  EE+SEMGGYF++NGLERVVRLLI PKRNYP SMVRNSF DRREGYTDK
Sbjct: 136  RGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDK 195

Query: 190  AVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIYASL 249
            AVVIRCVREDQS+VTVKLYYLRNGSARLGFW+QG+EYLLP+GVVLKALIDTTDHEIY SL
Sbjct: 196  AVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESL 255

Query: 250  TSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGLGKE 309
            T CYS+K+   KGAVGTQLVGER KIILDEVRDL+LF   QCL HIG+HFQ VM+GL  E
Sbjct: 256  TCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENE 315

Query: 310  KFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVLLPG 369
             +S VADAVL++YIFVHLDNNYDKFNLLIFM QKLFSLIDQTSVPDNPD LQNQ+VLLPG
Sbjct: 316  SYSIVADAVLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPG 375

Query: 370  QLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAVENM 429
             LIT+YLKEKL++WL K ++LL+DEI N  KNFEF SLAHVKKVMDKNPS+Q+S AVENM
Sbjct: 376  HLITIYLKEKLQEWLYKARRLLQDEI-NKRKNFEFSSLAHVKKVMDKNPSRQISLAVENM 435

Query: 430  LKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPES 489
            LKTGRLVTQ+GLDLQQRAG TVQAERLNFLRF+SHFRAVHRGASFAGLRTT+VRKLLPE+
Sbjct: 436  LKTGRLVTQSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEA 495

Query: 490  WGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMIPSL 549
            WGFLCPVHTPDGEPCGLLNH+ STCRITS+F+S+G  RDF+KIR SILSVLI +GM P+L
Sbjct: 496  WGFLCPVHTPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPAL 555

Query: 550  PKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVPLSI 609
            PKLVQ G P+ L+V+LDGR+VG I S+EVE  V HLRRLKV +  VIPDDLEVGY+PLS+
Sbjct: 556  PKLVQAGPPEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSM 615

Query: 610  SGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRKDEF 669
             GAYPGLYLFTSPSRFVRPV+N+SI  E+ H+IELIGPFEQV+MEIRCPDG DGGR++ F
Sbjct: 616  GGAYPGLYLFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIF 675

Query: 670  PATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQKLYHL 729
            PATHEEIHPTGMLSVVA+LTPWSDHNQSPRNMYQCQM KQTMAFS QAI  RADQKLYHL
Sbjct: 676  PATHEEIHPTGMLSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHL 735

Query: 730  QTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIY 789
            QTPQTPIVRTS Y KY++DE+PTGTNAIVAVLAY+GYDMEDAMILNKSSV+RG+ HGQIY
Sbjct: 736  QTPQTPIVRTSAYVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIY 795

Query: 790  QTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVA 849
            QTETIDLSD+ N+S R Q+MFRRSN+D S  S+ID+DGLPYVGQMI P+EPYCSIY+EV 
Sbjct: 796  QTETIDLSDENNKSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVT 855

Query: 850  GTTRTMKLKGSEAVIVDYVSVDVKNKNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQ 909
             +TR  KLKGSE VIVDYV++D KNK +PQKVNIRFRRPRNP+IGDKFSSRHGQKGVCSQ
Sbjct: 856  SSTRATKLKGSEPVIVDYVALDAKNKKHPQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQ 915

Query: 910  LWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAKGGCLNGEFVNATPFRSSV 969
            LWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAKGG L+G+FV+ATPF  S+
Sbjct: 916  LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKGGSLHGKFVDATPFSDSL 975

Query: 970  NKTNAGDEETNGETLVDELGSTLIKKGFNYHGLEVLYSGVYGTELTCEIFIGPVYYQRLR 1029
             K N G+  +   +LVDELGS L   GFNYHG+EVLYSG YGTELTCEIFIGPVYYQRLR
Sbjct: 976  RKAN-GEAGSESSSLVDELGSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLR 1035

Query: 1030 HMVSDKYQVRSTGTVDQVTRQPIKGRKKGGGIRFGEMERDSMLAHGASYLLHDRLHTCSD 1089
            HMVSDK+QVRSTGTVDQVTRQPIKGRK+GGGIRFGEMERDSMLAHGA+YLLHDRLHTCSD
Sbjct: 1036 HMVSDKFQVRSTGTVDQVTRQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSD 1095

Query: 1090 HHIADVCSLCGSVLTSSFVQPPKRAVREIGGLPPGKAPKRVTCHACKTSKGMETVAMPYV 1149
            HHIADVCSLCGS+LT+S +QP KRAVREIGGLPPG+APK+VTCHAC+TSKGMETV+MPY+
Sbjct: 1096 HHIADVCSLCGSILTTSIIQPQKRAVREIGGLPPGRAPKKVTCHACQTSKGMETVSMPYI 1155

Query: 1150 FKYLAAELAAMNIKMTLQLSSGA 1173
            F++LAAELAAMNIKMTLQLS+GA
Sbjct: 1156 FRFLAAELAAMNIKMTLQLSNGA 1176