Cucsa.004920 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.004920
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ribosome maturation protein SBDS
Location	scaffold00055 : 19337 .. 22146 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCTAAAAACTATTTTGAAGAAGGCTCGAGAGGCAAACATGCAAGTAAAGCCCATTAAGCATATATAAACGAAGTGGAGGGACAGACCTTCGTTGTAGTATCAGTATTGTTATCGTTTCCCTTTTTAATCGAATCGCCAAACTTTAACGAAGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGTAAGCTCCCTTAAACTCTATCGTTTCCTCTCTTTCAATTATCGGATTTTCTCTAGTTTGATGGGTTATTATGATTGAGAAGATGGTATAGCTTTGATGTTATAATAGGATAGAAATTGCAACCAATTTATGATTTATTTGTTAAATGGAGGATCCCCTTGGCTAACGGATTAGGAAAAGGAAAAACATCTTCTAATTGCTAGTGACAACATTAGTTGGAGTGGTAAATTGTTGAAGTAGATGGATATGATTATAATCCATCAGACCAGTTTTAGATTTTAGGGCTCGATTTGCAATGTGTACTATTTGACGTACTTTGGTACTGGTTTACTTCATATTTTATTATTTGTGTTGTATAGTTAAATTTGACTAATATGAACTTCAAAATGTATGTTGTAACAGGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAaGAATTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGGTTGGTGGAATTCCTGAATGAAGGTTTTCTTTTAATGTTTTTATATCACATCTAGTAATTTATGGATGATTCTTTCTTTCTTTTTTTTTtCTTtTTTTTTtGGTGTGTGCATTTGTGCTCATTTTTTTAACTGACGAGATTGTCAACTTCCTGGTACTAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAAACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGACATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGTAGGTTGATACTTTTTCCTGAATGTGAGATGGAACTTTCTTCTGCTTTGGATTTGTATAACTATTAATTCAAGGCCACAATTTTCGGCTGAtGTTTTTtATGATATGCAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTTCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACAGAACGTTCCATCTCTCCTTGATAaGTTAAATGCTTGGAGTGCTAGTATTGTTTCCGATGACCAGTCAGGAAATCAGCAACGAAGCATTGTGAGTCCGTGTTTCTTCATTGCAATTGTTGCTTTTCTTATCTTCTCCAATTTGCTAATGATATCATCATTTCACTCTTCTCCTAGAACAACTTGAATTCTTTTATTGGTTGTTGGTTCCTGCATGGGTGTCAATGTGGCATTAGTTGCCCATGTGTTGTGTTGGACTAGGCTATGTACACATGTATTATATTGCATGATAAATCCTGGGAACGAAGACTTTAGGAAGCAAGCCATCTTGAACCTGTTTTCTAAGTGAGAAGAATTTCAAGCGAGGTCTAGGCATTTAGTCATGCTTAAAAGCGGCTAGTGTTAAGACACATTGAAATGTGAATATTATTTACTTATATTATTGTGTCACCATTTCTTTTTGCTGGTGGAGTGGGATTGAGAGAAGGAAATCTTTTGAAATACTGTACTCAAGATGTGGATGTATTTGTACAGATTAATATATAATTGATAATTAATTGCCATCCTCATGGCGATCAAAGAGATGTATGAGAACGAGGATAGGTAGTGGTAGAATCCTTTGTATTTATTGTACTTATCATCTCGAATATTAACTTCATATGTGCATTTCCCATTAAGTACTGGCAATGCTTCGTAGTAGGTTGCACTTCATTGATACTGGGAACTGAGTTTTTATCTTTTCTGGTTCAACAGATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGCAATCCATTAATGAGTGAACTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGAGGACGATTATGAGAATGTGGAGCTGCCACCAAGGCAATTAAAGGAAACGAAATCGGTTATTCCTCAACTAAGTGAAGCTTTACAAAAGCAGACAATTTCTATCAACAGTGATAACGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGCTGTGGGGGATGTTACAAAGTTTAGAGAGCATTACAAGAGTGAGTGGCATAAGCATAATGTAAAGCGCAAAACCAAGAATCTTCCACCTCTGACCGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAGGAGTATTCATTTTGAACTACCTGCCATGTTATGCTTCGGTGAATAGCTGTGAGGTTTTGTACTTTAGTTACTATCATTGGCTAGTTGTAGCTTAAACTCTGTTAGATGGTCTTGACATGTCACGCATCGTGTAACGAATTCAGTTTTCATAGTTTTGACATTTTAGTGCTTTTGTTTTtGTACTATAAAGAATGTAATGAAACTATGGCAGCGTTGTAAATCAATTTGGTTTTtCTTTCTTAATGTTTTAAGTGTT

mRNA sequence

CTATCTAAAAACTATTTTGAAGAAGGCTCGAGAGGCAAACATGCAAGTAAAGCCCATTAAGCATATATAAACGAAGTGGAGGGACAGACCTTCGTTGTAGTATCAGTATTGTTATCGTTTCCCTTTTTAATCGAATCGCCAAACTTTAACGAAGATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAAGAATTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAAACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGACATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTTCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACAGAACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATTGTTTCCGATGACCAGTCAGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGCAATCCATTAATGAGTGAACTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGAGGACGATTATGAGAATGTGGAGCTGCCACCAAGGCAATTAAAGGAAACGAAATCGGTTATTCCTCAACTAAGTGAAGCTTTACAAAAGCAGACAATTTCTATCAACAGTGATAACGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGCTGTGGGGGATGTTACAAAGTTTAGAGAGCATTACAAGAGTGAGTGGCATAAGCATAATGTAAAGCGCAAAACCAAGAATCTTCCACCTCTGACCGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAGGAGTATTCATTTTGAACTACCTGCCATGTTATGCTTCGGTGAATAGCTGTGAGGTTTTGTACTTTAGTTACTATCATTGGCTAGTTGTAGCTTAAACTCTGTTAGATGGTCTTGACATGTCACGCATCGTGTAACGAATTCAGTTTTCATAGTTTTGACATTTTAGTGCTTTTGTTTTTGTACTATAAAGAATGTAATGAAACTATGGCAGCGTTGTAAATCAATTTGGTTTTTCTTTCTTAATGTTTTAAGTGTT

Coding sequence (CDS)

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAaGAATTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAAACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGACATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTTCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACAGAACGTTCCATCTCTCCTTGATAaGTTAAATGCTTGGAGTGCTAGTATTGTTTCCGATGACCAGTCAGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGCAATCCATTAATGAGTGAACTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGAGGACGATTATGAGAATGTGGAGCTGCCACCAAGGCAATTAAAGGAAACGAAATCGGTTATTCCTCAACTAAGTGAAGCTTTACAAAAGCAGACAATTTCTATCAACAGTGATAACGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGCTGTGGGGGATGTTACAAAGTTTAGAGAGCATTACAAGAGTGAGTGGCATAAGCATAATGTAAAGCGCAAAACCAAGAATCTTCCACCTCTGACCGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAGGAGTATTCATTTTGA

Protein sequence

MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF*

Homology

[Close]

BLAST of Cucsa.004920 vs. Swiss-Prot
Match: SBDS_MOUSE (Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4)

HSP 1 Score: 257.3 bits (656), Expect = 2.5e-67
Identity = 137/247 (55.47%), Postives = 177/247 (71.66%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQ 183
           PETKRPYT+ +IER M+DIH++V PN S+K+QALEVI +L++   I+R+ MRLR+I+P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSF 243
               L +KL      + S+D S  QQ  I+C +DP  +R+ + L+   ++  G  EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Cucsa.004920 vs. Swiss-Prot
Match: SBDS_RAT (Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 5.5e-67
Identity = 136/247 (55.06%), Postives = 177/247 (71.66%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQ 183
           PETKRPYT+ +IER M+DIH++V PN S+K+QALEVI +L++   I+R+ MRLR+++P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSF 243
               L +KL      + S+D S  QQ  I+C +DP  +R+ + L+   ++  G  EVLS 
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Cucsa.004920 vs. Swiss-Prot
Match: SBDS_BOVIN (Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 9.5e-67
Identity = 137/247 (55.47%), Postives = 176/247 (71.26%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQ 183
           PETKRPYT+ +IER M+DIH++V PN S+K+QALEVI +L++   I+R+ MRLR+I+P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSF 243
               L +KL      I S+D    QQ  I+C +DP  +R+ + L+   ++  G  EVLS 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Cucsa.004920 vs. Swiss-Prot
Match: SBDS_HUMAN (Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4)

HSP 1 Score: 251.1 bits (640), Expect = 1.8e-65
Identity = 135/247 (54.66%), Postives = 175/247 (70.85%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQ 183
           PETKRPYT+ +IER M+DIH++V  N S+K+QALEVI +L++   I+R+ MRLR+I+P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSF 243
               L +KL      I S+D    QQ  I+C +DP  +R+ + L+   ++  G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Cucsa.004920 vs. Swiss-Prot
Match: SBDS_PONAB (Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.8e-65
Identity = 135/247 (54.66%), Postives = 175/247 (70.85%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK ++L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQ 183
           PETKRPYT+ +IER M+DIH++V  N S+K+QALEVI +L++   I+R+ MRLR+I+P  
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLM---SELHGRFEVLSF 243
               L +KL      I S+D    QQ  I+C +DP  +R+ + L+   ++  G  EVL+ 
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNL 241

Query: 244 CLHEEGD 248
              EEGD
Sbjct: 242 KDVEEGD 246

[Close]

BLAST of Cucsa.004920 vs. TrEMBL
Match: A0A0A0KIY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G397690 PE=4 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 4.0e-205
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300
           CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300

Query: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 360
           STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Sbjct: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of Cucsa.004920 vs. TrEMBL
Match: W9RW90_9ROSA (Ribosome maturation protein SBDS OS=Morus notabilis GN=L484_005390 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 1.3e-139
Identity = 258/362 (71.27%), Postives = 300/362 (82.87%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSR LVQP+GQKRLTNVAVVRLKK G+RFEIACYKNKVLSWRSGVE+DLDEVLQSQ VYS
Sbjct: 1   MSRILVQPVGQKRLTNVAVVRLKKLGMRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKG+LAK+K+L AAFGTDDQ +ICL+IL +GELQ+AGKERE+QLS+QFRDIATIVMQK
Sbjct: 61  NVSKGILAKSKDLIAAFGTDDQAKICLEILDKGELQIAGKERESQLSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T+NPET+RPYTI+MIERLMR+IHFAVDP   SKKQALEVIHELQKHFPIKRSPMRLR  V
Sbjct: 121 TYNPETQRPYTINMIERLMREIHFAVDPISGSKKQALEVIHELQKHFPIKRSPMRLRLSV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           PEQ+  SL++KLNAWSA I S DQSG+ Q  IICELDP  YR+C  LM  L GRFEVL+ 
Sbjct: 181 PEQSSSSLMEKLNAWSAKIASKDQSGS-QLYIICELDPGIYRECEALMINLQGRFEVLAL 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINS-DNAPKEGK- 300
            +H  GDT+VDQY DD+E    P    K+    + +LS+ LQKQ+IS +S      EGK 
Sbjct: 241 SVHAGGDTHVDQY-DDHEG--QPSHVPKDATDSVAKLSDKLQKQSISSSSATTTAGEGKQ 300

Query: 301 -RCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEY 360
            +C TCN  VGD  +FREH+KSEWHKHN++RKT+NLPPLTEEEC  ++ +GDS++DLKEY
Sbjct: 301 SKCGTCNAFVGDSKQFREHFKSEWHKHNLRRKTRNLPPLTEEECMTDMEIGDSKADLKEY 358

[Close]

BLAST of Cucsa.004920 vs. TrEMBL
Match: V4V6B7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001639mg PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 4.6e-137
Identity = 247/363 (68.04%), Postives = 299/363 (82.37%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MS++LVQP+GQKRLTNVAVVRLKKHG+RFEIACYKNKVLSWRS VE+DLDEVLQS  VYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSQVEKDLDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKG+LAK+K+L AAFGTDDQT+ICL+IL++GELQVAGKERE Q SNQFRDIATIVMQK
Sbjct: 61  NVSKGILAKSKDLIAAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T N ET+RPYTISMIERLM +IHFAVDPN SSKKQALEVI ELQKHFPIKRSPMR+   V
Sbjct: 121 TVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           PEQN+ SL++KL+AW ASIVS D SG+ Q S+ICE++P  +RDC+ L+  L GR E+L+ 
Sbjct: 181 PEQNISSLMEKLDAWDASIVSKDNSGS-QLSLICEMEPGLFRDCDTLLRNLQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGK-- 300
            +H EGDT+VD Y+D  +   LPP   KE+   + +LSE ++KQ  S++S N   EGK  
Sbjct: 241 SVHAEGDTSVDHYDDHEDVPSLPP---KESADDVLKLSEKIEKQ--SLSSGNGNTEGKVK 300

Query: 301 --RCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKE 360
             +CSTCN  VGD  ++R+H+KS+WHKHN+KRKT+ LPPLT EEC  ++ + DS++DLKE
Sbjct: 301 QNKCSTCNAYVGDAKQYRDHFKSDWHKHNLKRKTRQLPPLTVEECLADMELDDSKADLKE 357

[Close]

BLAST of Cucsa.004920 vs. TrEMBL
Match: A0A0D2RB94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G083500 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 1.0e-136
Identity = 249/369 (67.48%), Postives = 297/369 (80.49%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MS++LVQPIGQKRLTNVAVVRLKKHG+RFEIACYKNKVLSWRS VE+DLDEVLQS  VYS
Sbjct: 1   MSKTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSRVEKDLDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+L AAFGTDDQT+ICL+IL++GELQVAGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLVAAFGTDDQTKICLEILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T NPET+RPYTISMIERLM +IHFAVDPN SSKKQALEVI +LQ +FPIKRSPMRLR IV
Sbjct: 121 TINPETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRQLQNNFPIKRSPMRLRLIV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           P QN  SL +KLN W A+IVS D+SG  Q S+ICE++P  +R+C+ L+  L GR E+LS 
Sbjct: 181 PGQNFYSLCEKLNEWGATIVSKDESGT-QLSVICEIEPGLFRECDSLVRNLQGRLEILSV 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIP--------QLSEALQKQTISINSDN 300
            +H EGDT VD Y+D+  + +LP    +   S +P        QLSE +QK TIS  + N
Sbjct: 241 SVHAEGDTQVDNYDDEDISSQLPKDSAESASSRLPPESSDSVVQLSEKIQKHTISSGNGN 300

Query: 301 APKEGK--RCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDS 360
           A  E K  +CSTCN  VGD  ++R+H+KSEWHKHN+KRKT+ LPPLT EEC  ++ + DS
Sbjct: 301 AEGEAKQHKCSTCNAFVGDSKQYRDHFKSEWHKHNLKRKTRQLPPLTAEECLADVELSDS 360

[Close]

BLAST of Cucsa.004920 vs. TrEMBL
Match: A0A068UWI3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035336001 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 5.1e-136
Identity = 245/360 (68.06%), Postives = 299/360 (83.06%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MS++LVQPIGQKRLTNVAVVRLKKHG+RFEIACYKNKVLSWRSGVE+DLDEVLQSQ VYS
Sbjct: 1   MSKTLVQPIGQKRLTNVAVVRLKKHGIRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAK+K+L  AFGTDDQ +ICL+IL++GELQVAGKERE+QLS+QFRD+ATIVMQK
Sbjct: 61  NVSKGVLAKSKDLVKAFGTDDQAKICLEILEKGELQVAGKERESQLSSQFRDVATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T NPET+RPYTISMIERLM +IHFAVDPN SSKKQALEVI ELQKH+PIKRSPMRLR  V
Sbjct: 121 TVNPETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHYPIKRSPMRLRLTV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           PEQN+  LL+KLN W+ ++VS D++G+ Q SIICE+DPS +RDC+ ++  +HGR E+L+ 
Sbjct: 181 PEQNILDLLEKLNGWNVNVVSRDEAGS-QISIICEMDPSLFRDCDAVVRNMHGRSEILAV 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTIS-INSDNAPKEGKR 300
            +H + DT+VD Y DD+E  + P    +     I QLS+ +Q QTIS   S +   +  +
Sbjct: 241 NVHVDSDTHVDHY-DDHE--DEPSSLRRGYTDPIHQLSDQMQNQTISKTGSSSRELKQNK 300

Query: 301 CSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 360
           CSTCN  VGD  ++REH+KSEWHKHN++RKT+ LPPLT EEC  +L +GDS++DLK+YSF
Sbjct: 301 CSTCNAVVGDSKEYREHFKSEWHKHNLRRKTRQLPPLTAEECLADLELGDSKADLKDYSF 356

[Close]

BLAST of Cucsa.004920 vs. TAIR10
Match: AT1G43860.1 (AT1G43860.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 461.1 bits (1185), Expect = 6.4e-130
Identity = 227/372 (61.02%), Postives = 289/372 (77.69%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MS++LVQP+GQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSGVE+D+DEVLQS  VYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAK+K+L  +FG+DD T+IC+ IL++GELQVAGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T NPET+RPYTISM+ERLM +IHFAVDP+ +SKKQAL+VI ELQKHFPIKRSPMRLR  V
Sbjct: 121 TINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKRSPMRLRLTV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           P QN PSLL+KL  W  S+VS D+SG Q  S +CE++P  +R+C+  +  + GR E+L+ 
Sbjct: 181 PVQNFPSLLEKLKEWDGSVVSKDESGTQM-STVCEMEPGLFRECDSHVRSIQGRLEILAV 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPR--------QLKETKSVIPQLSEALQKQTISINSD- 300
            +H EGDT++D Y D+++++ L           + K+    + +LS+ LQKQ IS   + 
Sbjct: 241 SVHAEGDTSMDHY-DEHDDMALQTHKPLLPAETETKDLTDPVVELSKKLQKQEISTTDNI 300

Query: 301 ----NAPKEGKRCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAM 360
                  K+G +CSTCN  VG+  ++REH KS+WHKHN+KRKT+ LPP++ +EC  E+ M
Sbjct: 301 KQEGGEEKKGTKCSTCNTFVGEAKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEIDM 360

[Close]

BLAST of Cucsa.004920 vs. NCBI nr
Match: gi|449458091|ref|XP_004146781.1| (PREDICTED: ribosome maturation protein SBDS [Cucumis sativus])

HSP 1 Score: 721.8 bits (1862), Expect = 5.7e-205
Identity = 359/359 (100.00%), Postives = 359/359 (100.00%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300
           CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300

Query: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 360
           STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Sbjct: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of Cucsa.004920 vs. NCBI nr
Match: gi|659133353|ref|XP_008466694.1| (PREDICTED: ribosome maturation protein SBDS [Cucumis melo])

HSP 1 Score: 700.3 bits (1806), Expect = 1.8e-198
Identity = 347/359 (96.66%), Postives = 355/359 (98.89%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+LKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           PEQNVPSLLDKLNAWSASIVS+DQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240

Query: 241 CLHEEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGKRC 300
           CLHEEGDTNVDQYEDDYENVEL PRQLKET+S IPQLSEALQKQTIS+NSDNAPKEGKRC
Sbjct: 241 CLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRC 300

Query: 301 STCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 360
           STCNVAVGD TKFREH+KS+WHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF
Sbjct: 301 STCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359

[Close]

BLAST of Cucsa.004920 vs. NCBI nr
Match: gi|1009169261|ref|XP_015903095.1| (PREDICTED: ribosome maturation protein SBDS [Ziziphus jujuba])

HSP 1 Score: 514.2 bits (1323), Expect = 1.8e-142
Identity = 254/358 (70.95%), Postives = 306/358 (85.47%), Query Frame = 1


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S VQPIGQKRLTNVAVVRLKKHG RFEIACYKNKVLSWRSGVE+D+DEVLQS  VYSNVS
Sbjct: 14  SKVQPIGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYSNVS 73

Query: 64  KGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KGVLAK+K+L  AFGTDDQT+ICL+IL++GELQ+AGKERE+QLS+QFRDIATIVMQKT+N
Sbjct: 74  KGVLAKSKDLIDAFGTDDQTKICLEILEKGELQIAGKERESQLSSQFRDIATIVMQKTYN 133

Query: 124 PETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEQ 183
           PET+RPYTISMIERLMR+IHFAV+PN SSKKQALEV+HELQKHFPIKRSPMRLR  VP++
Sbjct: 134 PETQRPYTISMIERLMREIHFAVEPNRSSKKQALEVVHELQKHFPIKRSPMRLRLTVPKE 193

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLH 243
            + SL +KLN+W+A+IVS+DQSG+Q   +ICELDP FYR+C  LMS L GRFEVL+  +H
Sbjct: 194 ELSSLKEKLNSWNANIVSEDQSGSQP-FVICELDPGFYRNCEALMSNLQGRFEVLALSVH 253

Query: 244 EEGDTNVDQYEDDYENVELPPRQLKETKSVIPQLSEALQKQTISINSDNAPKEGK--RCS 303
            EGD  VD+Y DD+E  + PP   KET   + +LSE +Q+Q+IS  S N+  +GK  +CS
Sbjct: 254 AEGDAQVDRY-DDHE--DEPPPLPKETTDTVAKLSEKMQQQSISTTSANSAGDGKQSKCS 313

Query: 304 TCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 360
           TCN  +GD  +FR+H+KSEWHKHN++RKT+ LPPLTEEEC  ++ +GDS++DLKEYSF
Sbjct: 314 TCNAFIGDSKQFRDHFKSEWHKHNLRRKTRQLPPLTEEECMADMELGDSKADLKEYSF 367

[Close]

BLAST of Cucsa.004920 vs. NCBI nr
Match: gi|694385078|ref|XP_009368386.1| (PREDICTED: ribosome maturation protein SBDS [Pyrus x bretschneideri])

HSP 1 Score: 507.7 bits (1306), Expect = 1.7e-140
Identity = 259/379 (68.34%), Postives = 303/379 (79.95%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQP+GQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSGVE+DLDEVLQS  VY+
Sbjct: 1   MSRSLVQPVGQKRLTNVAVVRLKKRGTRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYT 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+LKAAF +DDQT+ICL+IL +GELQVAGKERE+QLS+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDSDDQTKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T+NPET+RPYTIS+IE LM +IHFAVDP+ SSKKQALEVIHELQKHFPIKRSPMRLR IV
Sbjct: 121 TYNPETRRPYTISLIESLMHEIHFAVDPHKSSKKQALEVIHELQKHFPIKRSPMRLRLIV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           P+    SL +KL AW+ASI+S DQSG+ Q S ICELDP FYR+C  LM +LHGR+EVL+ 
Sbjct: 181 PDHEFSSLSEKLTAWNASIISKDQSGS-QISTICELDPGFYRECEGLMMKLHGRYEVLAL 240

Query: 241 CLHEEGDTNVDQYED----------DYENVEL--------PPRQLKETKSVIPQLSEALQ 300
            +H EGDT +DQY+D          D  N+          P    KE+   + +LS+ LQ
Sbjct: 241 SVHAEGDTVIDQYDDHEDEPSHSLKDSSNISSLKKKECTDPDLSKKESADPVLKLSDDLQ 300

Query: 301 KQTISINSDNAPKEGK--RCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEE 360
           KQ+IS  S NA  EGK  RCSTCN  VGD  ++REH+KSEWHKHN+KRKT+ LPPLTEEE
Sbjct: 301 KQSISTGSGNAAAEGKQNRCSTCNAFVGDSKQYREHFKSEWHKHNLKRKTRQLPPLTEEE 360

[Close]

BLAST of Cucsa.004920 vs. NCBI nr
Match: gi|657949722|ref|XP_008344563.1| (PREDICTED: ribosome maturation protein SBDS [Malus domestica])

HSP 1 Score: 507.3 bits (1305), Expect = 2.2e-140
Identity = 257/379 (67.81%), Postives = 303/379 (79.95%), Query Frame = 1


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQP+GQKRLTNVAVVRLKKHG RFEIACYKNKVLSWRSGVE+DLDEVLQS  VY+
Sbjct: 1   MSRSLVQPVGQKRLTNVAVVRLKKHGTRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYT 60

Query: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK+LKAAF +DDQT+ICL+IL +GELQVAGKERE+QLS+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDSDDQTKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T+NPET+RPYTIS+IE LM +IHFAVDP+ SSKKQALEVIHELQKHFPIKRSPMRLR IV
Sbjct: 121 TYNPETRRPYTISLIESLMHEIHFAVDPHKSSKKQALEVIHELQKHFPIKRSPMRLRLIV 180

Query: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSF 240
           P+    SL +KL AW+ASI+S DQSG+ Q S ICELDP FYR+C  LM +LHGR+EVL+ 
Sbjct: 181 PDHEFSSLSEKLTAWNASIISKDQSGS-QISTICELDPGFYRECEGLMMKLHGRYEVLAL 240

Query: 241 CLHEEGDTNVDQYED----------DYENVEL--------PPRQLKETKSVIPQLSEALQ 300
            +H EGDT +DQY+D          D  N+          P    KE+   + +LS+ LQ
Sbjct: 241 SVHAEGDTVIDQYDDHEDEPSHSLKDSSNISSLKKKECTDPDLSKKESADPVLKLSDDLQ 300

Query: 301 KQTISINSDNAPKEGK--RCSTCNVAVGDVTKFREHYKSEWHKHNVKRKTKNLPPLTEEE 360
           KQ+IS  S N   EGK  +CSTCN  VGD  ++R+H+KSEWHKHN+KRKT+ LPPLTEEE
Sbjct: 301 KQSISTGSGNTAAEGKQNKCSTCNAFVGDSKQYRDHFKSEWHKHNLKRKTRQLPPLTEEE 360

The following BLAST results are available for this feature:

BLAST of Cucsa.004920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SBDS_MOUSE	2.5e-67	55.47	Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4	[more]
SBDS_RAT	5.5e-67	55.06	Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1	[more]
SBDS_BOVIN	9.5e-67	55.47	Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1	[more]
SBDS_HUMAN	1.8e-65	54.66	Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4	[more]
SBDS_PONAB	1.8e-65	54.66	Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1	[more]

BLAST of Cucsa.004920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIY6_CUCSA	4.0e-205	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G397690 PE=4 SV=1	[more]
W9RW90_9ROSA	1.3e-139	71.27	Ribosome maturation protein SBDS OS=Morus notabilis GN=L484_005390 PE=4 SV=1	[more]
V4V6B7_9ROSI	4.6e-137	68.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001639mg PE=4 SV=1	[more]
A0A0D2RB94_GOSRA	1.0e-136	67.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G083500 PE=4 SV=1	[more]
A0A068UWI3_COFCA	5.1e-136	68.06	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035336001 PE=4 SV=1	[more]

BLAST of Cucsa.004920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G43860.1	6.4e-130	61.02	sequence-specific DNA binding transcription factors	[more]

BLAST of Cucsa.004920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458091\|ref\|XP_004146781.1\|	5.7e-205	100.00	PREDICTED: ribosome maturation protein SBDS [Cucumis sativus]	[more]
gi\|659133353\|ref\|XP_008466694.1\|	1.8e-198	96.66	PREDICTED: ribosome maturation protein SBDS [Cucumis melo]	[more]
gi\|1009169261\|ref\|XP_015903095.1\|	1.8e-142	70.95	PREDICTED: ribosome maturation protein SBDS [Ziziphus jujuba]	[more]
gi\|694385078\|ref\|XP_009368386.1\|	1.7e-140	68.34	PREDICTED: ribosome maturation protein SBDS [Pyrus x bretschneideri]	[more]
gi\|657949722\|ref\|XP_008344563.1\|	2.2e-140	67.81	PREDICTED: ribosome maturation protein SBDS [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002140	Sdo1/SBDS
IPR003604	Matrin/U1-like-C_Znf_C2H2
IPR007087	Zinc finger, C2H2
IPR018023	Ribosome_mat_SBDS_CS
IPR018978	Ribosome_mat_SBDS_C
IPR019783	Ribosome_mat_SBDS_N

Vocabulary: **Biological Process**
Term	Definition
GO:0042256	mature ribosome assembly
GO:0042254	ribosome biogenesis

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042256	mature ribosome assembly
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.004920.1	Cucsa.004920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002140	Ribosome maturation protein Sdo1/SBDS	PANTHER	PTHR10927:SF1	RIBOSOME MATURATION PROTEIN SBDS	coord: 1..349 score: 5.7E
IPR002140	Ribosome maturation protein Sdo1/SBDS	TIGRFAMs	TIGR00291	TIGR00291	coord: 13..231 score: 1.9
IPR003604	Zinc finger, U1-type	SMART	SM00451	ZnF_U1_5	coord: 295..329 score: 0.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 300..322 scor
IPR018023	Ribosome maturation protein SBDS, conserved site	PROSITE	PS01267	UPF0023	coord: 46..65 scor
IPR018978	Ribosome maturation protein SBDS, C-terminal	PFAM	PF09377	SBDS_C	coord: 110..225 score: 4.0
IPR019783	Ribosome maturation protein SBDS, N-terminal	GENE3D	G3DSA:3.30.1250.10		coord: 17..96 score: 6.8
IPR019783	Ribosome maturation protein SBDS, N-terminal	PFAM	PF01172	SBDS	coord: 16..102 score: 8.5
IPR019783	Ribosome maturation protein SBDS, N-terminal	unknown	SSF89895	FYSH domain	coord: 13..96 score: 6.41
None	No IPR available	PANTHER	PTHR10927	RIBOSOME MATURATION PROTEIN SBDS	coord: 1..349 score: 5.7E
None	No IPR available	unknown	SSF109728	Hypothetical protein AF0491, middle domain	coord: 98..171 score: 8.24
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 287..329 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.004920	Csa6G397690	Cucumber (Chinese Long) v2	cgycuB051
Cucsa.004920	CSPI06G20580	Wild cucumber (PI 183967)	cgycpiB051
Cucsa.004920	CsaV3_6G035600	Cucumber (Chinese Long) v3	cgycucB053

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None