CsaV3_UNG160180 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG160180
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ATP synthase subunit B
Location	scaffold66 : 370617 .. 371446 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCAACCATGTGGAGAGCTTGACTTTGACGATAAATTCGATTTGGTTTCTGAATACATGCCGAAGGTGAGTGCAAGCTAAACCACTGATGACTTTGATTCATTTGACTCCTGCCCATCAACTTTTCTTTTGTTCTACAGTTTTCGGAAGAGTTTCTTGGCGATGTATCATTGCTGCTTGGCGATGGAGGTACTATGTTCTTATGATTTTTTTTTTAAGTACAACAATTGGGGGTTGGGATTCAAACCTCCCACCTCTAGGATGGAATGTTATGTCAATTACAACTTAGCTAAGCTTGCTTTGATATCTATTCTTATGATCTAACTGAAATGTAGATGTAGATCAATAAAATAAGGAAAGTTGTGGAATGATTTTGTTTATTGGTATTTGTTAGGGTATATATTGATGTTTAATCTTGGAGAGAGATTTTATTTGTTTGTTGCGGAGGTAGTGGCCCTACTATTGATTGGTTGCTATGGTTTAATTTGTTTCAGACTATAGGGGAAAGGAGATGGAAAACACTTTGCAGCCTTATTGTGACAATAAGCTGGATCTTGGTTCTTCCCAGAACTATTGTGGGGAAATGGCTATGGTTGGCTTGGATGCAATGCAGCGTGCAAATTCTACACTTGAAGATTTTGTAAGTGCATGGTATAGACTTTTTATTTTTGTTTTGAATCTTTGATTGAATATTAAATATTTGGGGGACTTCCATTGGCAAATACCTCTGATGGCATATGGTCGTATCGGCAGCATATATGGTTCAGACCTGTGGATGGGCTGGGCTGGGTTGGTTCAGTTCTTCCTTGCTGTCCCCTCTTTGTTCCAAA

mRNA sequence

GTGCAACCATGTGGAGAGCTTGACTTTGACGATAAATTCGATTTGGTTTCTGAATACATGCCGAAGTTTTCGGAAGAGTTTCTTGGCGATGTATCATTGCTGCTTGGCGATGGAGACTATAGGGGAAAGGAGATGGAAAACACTTTGCAGCCTTATTGTGACAATAAGCTGGATCTTGGTTCTTCCCAGAACTATTGTGGGGAAATGGCTATGGTTGGCTTGGATGCAATGCAGCGTGCAAATTCTACACTTGAAGATTTTCATATATGGTTCAGACCTGTGGATGGGCTGGGCTGGGTTGGTTCAGTTCTTCCTTGCTGTCCCCTCTTTGTTCCAAA

Coding sequence (CDS)

GTGCAACCATGTGGAGAGCTTGACTTTGACGATAAATTCGATTTGGTTTCTGAATACATGCCGAAGTTTTCGGAAGAGTTTCTTGGCGATGTATCATTGCTGCTTGGCGATGGAGACTATAGGGGAAAGGAGATGGAAAACACTTTGCAGCCTTATTGTGACAATAAGCTGGATCTTGGTTCTTCCCAGAACTATTGTGGGGAAATGGCTATGGTTGGCTTGGATGCAATGCAGCGTGCAAATTCTACACTTGAAGATTTTCATATATGGTTCAGACCTGTGGATGGGCTGGGCTGGGTTGGTTCAGTTCTTCCTTGCTGTCCCCTCTTTGTTCCAAA

Protein sequence

VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLGSSQNYCGEMAMVGLDAMQRANSTLEDFHIWFRPVDGLGWVGSVLPCCPLFVPX

Homology

[Close]

BLAST of CsaV3_UNG160180 vs. NCBI nr
Match: XP_004146929.1 (PREDICTED: uncharacterized protein LOC101211687 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG
Sbjct: 42  VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 101

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           SSQNYCGEMAMVGLDAMQRANSTLEDF
Sbjct: 102 SSQNYCGEMAMVGLDAMQRANSTLEDF 128

[Close]

BLAST of CsaV3_UNG160180 vs. NCBI nr
Match: KGN53207.1 (hypothetical protein Csa_4G026840 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG
Sbjct: 42  VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 101

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           SSQNYCGEMAMVGLDAMQRANSTLEDF
Sbjct: 102 SSQNYCGEMAMVGLDAMQRANSTLEDF 128

[Close]

BLAST of CsaV3_UNG160180 vs. NCBI nr
Match: XP_008453814.1 (PREDICTED: uncharacterized protein LOC103494428 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-42
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCD+KLD G
Sbjct: 42  VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDDKLDFG 101

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
            SQNYCGEMAMVGLDAMQRANSTLEDF
Sbjct: 102 FSQNYCGEMAMVGLDAMQRANSTLEDF 128

[Close]

BLAST of CsaV3_UNG160180 vs. NCBI nr
Match: XP_022984299.1 (uncharacterized protein LOC111482641 isoform X2 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           V+PCGELDF+DKF+LVSEYMPKFSEEFLG+ SLLLGDG YRGKEME TLQPY DNKLD G
Sbjct: 42  VKPCGELDFEDKFNLVSEYMPKFSEEFLGEASLLLGDGGYRGKEMETTLQPYSDNKLDFG 101

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           SS NYCGEMAMVGLDAMQRANS+LEDF
Sbjct: 102 SSMNYCGEMAMVGLDAMQRANSSLEDF 128

[Close]

BLAST of CsaV3_UNG160180 vs. NCBI nr
Match: XP_023551894.1 (uncharacterized protein LOC111809728 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           V+PCGELDF+DKF+LVSEYMPKFSEEFLG+ SLLLGDG YR KEME TLQPY DNKLD G
Sbjct: 42  VKPCGELDFEDKFNLVSEYMPKFSEEFLGEASLLLGDGGYRRKEMETTLQPYSDNKLDFG 101

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           SS NYCGEMAMVGLDAMQRANSTLEDF
Sbjct: 102 SSMNYCGEMAMVGLDAMQRANSTLEDF 128

[Close]

BLAST of CsaV3_UNG160180 vs. TAIR10
Match: AT5G10320.1 (unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-15
Identity = 45/96 (46.88%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDN----- 60
           VQPCGELD D K  L+SE++PK S  FL ++S  L + D       NT+   C N     
Sbjct: 45  VQPCGELDLDSKLGLLSEFLPKISGPFLEEISRSL-ELDDEATTPLNTISAECQNSCVKR 104

Query: 61  ----KLDLGSSQNYCGEMAMVGLDAMQRANSTLEDF 88
                +D   SQ +   +AMVGLDAM+RANSTLEDF
Sbjct: 105 SVMDNVDPYMSQKHQEVVAMVGLDAMKRANSTLEDF 139

[Close]

BLAST of CsaV3_UNG160180 vs. TrEMBL
Match: tr|A0A0A0KXR8|A0A0A0KXR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026840 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.5e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG
Sbjct: 42  VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 101

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           SSQNYCGEMAMVGLDAMQRANSTLEDF
Sbjct: 102 SSQNYCGEMAMVGLDAMQRANSTLEDF 128

[Close]

BLAST of CsaV3_UNG160180 vs. TrEMBL
Match: tr|A0A1S3BX98|A0A1S3BX98_CUCME (uncharacterized protein LOC103494428 OS=Cucumis melo OX=3656 GN=LOC103494428 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.9e-42
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCD+KLD G
Sbjct: 42  VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDDKLDFG 101

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
            SQNYCGEMAMVGLDAMQRANSTLEDF
Sbjct: 102 FSQNYCGEMAMVGLDAMQRANSTLEDF 128

[Close]

BLAST of CsaV3_UNG160180 vs. TrEMBL
Match: tr|A0A2S1CET5|A0A2S1CET5_PRUYE (Uncharacterized protein OS=Prunus yedoensis OX=3759 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-18
Identity = 52/87 (59.77%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELD   K  LVSEYMPK S  FL + S  L    Y  K +EN LQ  C +K +  
Sbjct: 43  VQPCGELDLGKKCSLVSEYMPKISAAFLDEASKWLNGEGYEEKSVENALQLACSHKPESS 102

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           S  N   EMAMVGLDAMQRANSTLEDF
Sbjct: 103 SLDNNSEEMAMVGLDAMQRANSTLEDF 129

[Close]

BLAST of CsaV3_UNG160180 vs. TrEMBL
Match: tr|A0A2S1CET6|A0A2S1CET6_PRUYE (Uncharacterized protein OS=Prunus yedoensis OX=3759 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.5e-18
Identity = 52/87 (59.77%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELD   K  LVSEYMPK S  FL + S  L    Y  K +EN LQ  C +K +  
Sbjct: 43  VQPCGELDLGKKCTLVSEYMPKISAAFLDEASKWLNGEGYEEKSVENALQLACSHKPESS 102

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           SS N   EMAMVGL AMQRANSTLEDF
Sbjct: 103 SSDNNSEEMAMVGLAAMQRANSTLEDF 129

[Close]

BLAST of CsaV3_UNG160180 vs. TrEMBL
Match: tr|M5W5C9|M5W5C9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G191000 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 51/87 (58.62%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 1   VQPCGELDFDDKFDLVSEYMPKFSEEFLGDVSLLLGDGDYRGKEMENTLQPYCDNKLDLG 60
           VQPCGELD   K  LVSEYMPK S  FL + S  L    Y  + +EN LQ  C +K +  
Sbjct: 43  VQPCGELDLGKKCSLVSEYMPKISAAFLDEASKWLNGEGYEERSVENALQLACSHKPESS 102

Query: 61  SSQNYCGEMAMVGLDAMQRANSTLEDF 88
           S  N   EMAMVGLDAMQRANSTLEDF
Sbjct: 103 SLDNSYEEMAMVGLDAMQRANSTLEDF 129

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG160180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146929.1	5.3e-44	100.00	PREDICTED: uncharacterized protein LOC101211687 [Cucumis sativus]	[more]
KGN53207.1	5.3e-44	100.00	hypothetical protein Csa_4G026840 [Cucumis sativus]	[more]
XP_008453814.1	2.9e-42	96.55	PREDICTED: uncharacterized protein LOC103494428 [Cucumis melo]	[more]
XP_022984299.1	2.1e-37	87.36	uncharacterized protein LOC111482641 isoform X2 [Cucurbita maxima]	[more]
XP_023551894.1	6.2e-37	87.36	uncharacterized protein LOC111809728 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_UNG160180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10320.1	8.2e-15	46.88	unknown protein	[more]

BLAST of CsaV3_UNG160180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG160180 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXR8\|A0A0A0KXR8_CUCSA	3.5e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026840 PE=4 SV=1	[more]
tr\|A0A1S3BX98\|A0A1S3BX98_CUCME	1.9e-42	96.55	uncharacterized protein LOC103494428 OS=Cucumis melo OX=3656 GN=LOC103494428 PE=...	[more]
tr\|A0A2S1CET5\|A0A2S1CET5_PRUYE	4.3e-18	59.77	Uncharacterized protein OS=Prunus yedoensis OX=3759 PE=4 SV=1	[more]
tr\|A0A2S1CET6\|A0A2S1CET6_PRUYE	9.5e-18	59.77	Uncharacterized protein OS=Prunus yedoensis OX=3759 PE=4 SV=1	[more]
tr\|M5W5C9\|M5W5C9_PRUPE	1.2e-17	58.62	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G191000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG160180.1	CsaV3_UNG160180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35754	FAMILY NOT NAMED	coord: 1..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG160180	CSPI04G04500	Wild cucumber (PI 183967)	cpicucB229
CsaV3_UNG160180	Cucsa.093740	Cucumber (Gy14) v1	cgycucB103
CsaV3_UNG160180	CmaCh16G006990	Cucurbita maxima (Rimu)	cmacucB0399
CsaV3_UNG160180	CmoCh16G007580	Cucurbita moschata (Rifu)	cmocucB0395
CsaV3_UNG160180	Cp4.1LG14g01240	Cucurbita pepo (Zucchini)	cpecucB0272
CsaV3_UNG160180	Carg05812	Silver-seed gourd	carcucB1064
CsaV3_UNG160180	ClCG07G017370	Watermelon (Charleston Gray)	cucwcgB356
CsaV3_UNG160180	Lsi07G001570	Bottle gourd (USVL1VR-Ls)	cuclsiB341
CsaV3_UNG160180	MELO3C017606.2	Melon (DHL92) v3.6.1	cucmedB338
CsaV3_UNG160180	Cla97C07G144410	Watermelon (97103) v2	cucwmbB346

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_UNG160180	CsaV3_4G004600	Cucumber (Chinese Long) v3	cuccucB168
CsaV3_UNG160180	CsaV3_UNG122970	Cucumber (Chinese Long) v3	cuccucB192

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_UNG160180	Cucumber (Chinese Long) v3	cuccucB193
CsaV3_UNG160180	Silver-seed gourd	carcucB0983
CsaV3_UNG160180	Cucumber (Gy14) v2	cgybcucB180
CsaV3_UNG160180	Cucurbita maxima (Rimu)	cmacucB0857
CsaV3_UNG160180	Cucurbita moschata (Rifu)	cmocucB0843
CsaV3_UNG160180	Cucurbita pepo (Zucchini)	cpecucB0514
CsaV3_UNG160180	Melon (DHL92) v3.5.1	cucmeB346
CsaV3_UNG160180	Watermelon (97103) v1	cucwmB378
CsaV3_UNG160180	Wax gourd	cucwgoB438
CsaV3_UNG160180	Wax gourd	cucwgoB439