CsaV3_UNG151160 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG151160
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Serine/threonine-protein phosphatase
Location	scaffold46 : 333604 .. 333969 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATCCACGATCGTATCTGCACTGCATAAAAAATGAAGACGTAAACCATCTTGTCCTTTTGCTTGATGGCCAATCAGATCTTTCTTTAACGCAACACCCTCTTGGTTTCCCTTTAAAGAGGCTCAGAATGCCTCAGTTGTTGGTAAAGGTGATTAATCACATTCCACCTCTCAATTGTAGCCCTTTTTCTTATCTTGTATGATGATAGAATAGATGTATCGTACTGTTATGCTTATCGAGGTCTTGTAAATGGAGCTAACCGTTATTACTTCACATGCAGGTCAAAGCATATTATGATTTTGAGGATGTAATTGATTCCGACGAAGAATTAGACTTGGCCTCAATGGCAACTGAACAATGA

mRNA sequence

ATGGCTAATCCACGATCGTATCTGCACTGCATAAAAAATGAAGACGTAAACCATCTTGTCCTTTTGCTTGATGGCCAATCAGATCTTTCTTTAACGCAACACCCTCTTGGTTTCCCTTTAAAGAGGCTCAGAATGCCTCAGTTGTTGGTAAAGGTCAAAGCATATTATGATTTTGAGGATGTAATTGATTCCGACGAAGAATTAGACTTGGCCTCAATGGCAACTGAACAATGA

Coding sequence (CDS)

ATGGCTAATCCACGATCGTATCTGCACTGCATAAAAAATGAAGACGTAAACCATCTTGTCCTTTTGCTTGATGGCCAATCAGATCTTTCTTTAACGCAACACCCTCTTGGTTTCCCTTTAAAGAGGCTCAGAATGCCTCAGTTGTTGGTAAAGGTCAAAGCATATTATGATTTTGAGGATGTAATTGATTCCGACGAAGAATTAGACTTGGCCTCAATGGCAACTGAACAATGA

Protein sequence

MANPRSYLHCIKNEDVNHLVLLLDGQSDLSLTQHPLGFPLKRLRMPQLLVKVKAYYDFEDVIDSDEELDLASMATEQ

Homology

[Close]

BLAST of CsaV3_UNG151160 vs. NCBI nr
Match: KGN55587.1 (hypothetical protein Csa_3G000110 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 8.1e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MANPRSYLHCIKNEDVNHLVLLLDGQSDLSLTQHPLGFPLKRLRMPQLLVKVKAYYDFED 60
          MANPRSYLHCIKNEDVNHLVLLLDGQSDLSLTQHPLGFPLKRLRMPQLLVKVKAYYDFED
Sbjct: 7  MANPRSYLHCIKNEDVNHLVLLLDGQSDLSLTQHPLGFPLKRLRMPQLLVKVKAYYDFED 66

Query: 61 VIDSDEELDLASMATEQ 78
          VIDSDEELDLASMATEQ
Sbjct: 67 VIDSDEELDLASMATEQ 83

[Close]

BLAST of CsaV3_UNG151160 vs. NCBI nr
Match: XP_004146184.1 (PREDICTED: serine/threonine-protein phosphatase 7 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 4.3e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 51  KVKAYYDFEDVIDSDEELDLASMATEQ 78
           KVKAYYDFEDVIDSDEELDLASMATEQ
Sbjct: 439 KVKAYYDFEDVIDSDEELDLASMATEQ 465

[Close]

BLAST of CsaV3_UNG151160 vs. NCBI nr
Match: XP_008448439.1 (PREDICTED: serine/threonine-protein phosphatase 7 isoform X1 [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 51  KVKAYYDFEDVIDSDEELDLASMATE 77
           KVKAYYDFEDVIDSDEELDLASMATE
Sbjct: 439 KVKAYYDFEDVIDSDEELDLASMATE 464

[Close]

BLAST of CsaV3_UNG151160 vs. NCBI nr
Match: XP_016900612.1 (PREDICTED: serine/threonine-protein phosphatase 7 isoform X3 [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 51  KVKAYYDFEDVIDSDEELDLASMATE 77
           KVKAYYDFEDVIDSDEELDLASMATE
Sbjct: 390 KVKAYYDFEDVIDSDEELDLASMATE 415

[Close]

BLAST of CsaV3_UNG151160 vs. NCBI nr
Match: XP_008448440.1 (PREDICTED: serine/threonine-protein phosphatase 7 isoform X2 [Cucumis melo])

HSP 1 Score: 53.1 bits (126), Expect = 4.8e-04
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 51  KVKAYYDFEDVIDSDEELDLASMATE 77
           +VKAYYDFEDVIDSDEELDLASMATE
Sbjct: 403 QVKAYYDFEDVIDSDEELDLASMATE 428

[Close]

BLAST of CsaV3_UNG151160 vs. TrEMBL
Match: tr|A0A0A0L4S2|A0A0A0L4S2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000110 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MANPRSYLHCIKNEDVNHLVLLLDGQSDLSLTQHPLGFPLKRLRMPQLLVKVKAYYDFED 60
          MANPRSYLHCIKNEDVNHLVLLLDGQSDLSLTQHPLGFPLKRLRMPQLLVKVKAYYDFED
Sbjct: 7  MANPRSYLHCIKNEDVNHLVLLLDGQSDLSLTQHPLGFPLKRLRMPQLLVKVKAYYDFED 66

Query: 61 VIDSDEELDLASMATEQ 78
          VIDSDEELDLASMATEQ
Sbjct: 67 VIDSDEELDLASMATEQ 83

[Close]

BLAST of CsaV3_UNG151160 vs. TrEMBL
Match: tr|A0A1S3BJ27|A0A1S3BJ27_CUCME (Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103490636 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 51  KVKAYYDFEDVIDSDEELDLASMATE 77
           KVKAYYDFEDVIDSDEELDLASMATE
Sbjct: 439 KVKAYYDFEDVIDSDEELDLASMATE 464

[Close]

BLAST of CsaV3_UNG151160 vs. TrEMBL
Match: tr|A0A1S4DXA9|A0A1S4DXA9_CUCME (Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103490636 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 51  KVKAYYDFEDVIDSDEELDLASMATE 77
           KVKAYYDFEDVIDSDEELDLASMATE
Sbjct: 390 KVKAYYDFEDVIDSDEELDLASMATE 415

[Close]

BLAST of CsaV3_UNG151160 vs. TrEMBL
Match: tr|A0A1S3BJP4|A0A1S3BJP4_CUCME (Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103490636 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-04
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 51  KVKAYYDFEDVIDSDEELDLASMATE 77
           +VKAYYDFEDVIDSDEELDLASMATE
Sbjct: 403 QVKAYYDFEDVIDSDEELDLASMATE 428

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG151160 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55587.1	8.1e-36	100.00	hypothetical protein Csa_3G000110 [Cucumis sativus]	[more]
XP_004146184.1	4.3e-05	100.00	PREDICTED: serine/threonine-protein phosphatase 7 [Cucumis sativus]	[more]
XP_008448439.1	1.6e-04	100.00	PREDICTED: serine/threonine-protein phosphatase 7 isoform X1 [Cucumis melo]	[more]
XP_016900612.1	1.6e-04	100.00	PREDICTED: serine/threonine-protein phosphatase 7 isoform X3 [Cucumis melo]	[more]
XP_008448440.1	4.8e-04	96.15	PREDICTED: serine/threonine-protein phosphatase 7 isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_UNG151160 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG151160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG151160 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4S2\|A0A0A0L4S2_CUCSA	5.4e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000110 PE=4 SV=1	[more]
tr\|A0A1S3BJ27\|A0A1S3BJ27_CUCME	1.1e-04	100.00	Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103490636 PE=...	[more]
tr\|A0A1S4DXA9\|A0A1S4DXA9_CUCME	1.1e-04	100.00	Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103490636 PE=...	[more]
tr\|A0A1S3BJP4\|A0A1S3BJP4_CUCME	3.2e-04	96.15	Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103490636 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG151160.1	CsaV3_UNG151160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG151160	CSPI03G00100	Wild cucumber (PI 183967)	cpicucB158
CsaV3_UNG151160	Bhi11G000272	Wax gourd	cucwgoB359

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CsaV3_UNG151160	CsaV3_3G000110	Cucumber (Chinese Long) v3	cuccucB115

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_UNG151160	Bottle gourd (USVL1VR-Ls)	cuclsiB264
CsaV3_UNG151160	Melon (DHL92) v3.5.1	cucmeB266
CsaV3_UNG151160	Melon (DHL92) v3.6.1	cucmedB261
CsaV3_UNG151160	Watermelon (Charleston Gray)	cucwcgB274
CsaV3_UNG151160	Watermelon (97103) v1	cucwmB293
CsaV3_UNG151160	Watermelon (97103) v2	cucwmbB265
CsaV3_UNG151160	Cucumber (Gy14) v2	cgybcucB126
CsaV3_UNG151160	Cucumber (Gy14) v1	cgycucB501