CsaV3_UNG135030 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG135030
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
Location	scaffold66 : 118005 .. 118174 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAATACCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGAAATTCAAGATCAATCACAGAAATTCGACTCCATATCACCCCAAGACAAATGTGGCAGTTGAGGCAGCCAACAAAAATATTAAAAGAGTCATTGAGAAGAAGACAACAACATACAAAGATTGA

mRNA sequence

AATACCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGAAATTCAAGATCAATCACAGAAATTCGACTCCATATCACCCCAAGACAAATGTGGCAGTTGAGGCAGCCAACAAAAATATTAAAAGAGTCATTGAGAAGAAGACAACAACATACAAAGATTG

Coding sequence (CDS)

AATACCAAGAACCTTAATAACAAAATGATGGACGAACTTTGTGAGAAATTCAAGATCAATCACAGAAATTCGACTCCATATCACCCCAAGACAAATGTGGCAGTTGAGGCAGCCAACAAAAATATTAAAAGAGTCATTGAGAAGAAGACAACAACATACAAAGATTG

Protein sequence

NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKDX

Homology

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BLAST of CsaV3_UNG135030 vs. NCBI nr
Match: XP_011656202.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
           N KNLNNKMMDELCEKFKINHRNSTPY PK N AVEAANKNIKR+IEK TTTYKD
Sbjct: 249 NAKNLNNKMMDELCEKFKINHRNSTPYRPKMNGAVEAANKNIKRIIEKMTTTYKD 303

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BLAST of CsaV3_UNG135030 vs. NCBI nr
Match: PKI49826.1 (hypothetical protein CRG98_029803 [Punica granatum])

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-15
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
           N K LNN+++DELCE+FKI+HRNSTPYHP+ N AVEAANKNIKR+IEK T TYKD
Sbjct: 75  NAKTLNNRIIDELCERFKIHHRNSTPYHPQMNGAVEAANKNIKRIIEKMTVTYKD 129

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BLAST of CsaV3_UNG135030 vs. NCBI nr
Match: XP_022728771.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111284343 [Durio zibethinus])

HSP 1 Score: 88.6 bits (218), Expect = 7.4e-15
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1    NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
            N KNLNNKMM+E+C +FKI HRNS PYHPK N AVEAANKNIKR++EK T TYKD
Sbjct: 1835 NAKNLNNKMMNEVCTQFKIRHRNSAPYHPKMNGAVEAANKNIKRILEKMTETYKD 1889

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BLAST of CsaV3_UNG135030 vs. NCBI nr
Match: XP_022716542.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111275425 [Durio zibethinus])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1    NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
            N KNLNNKMM+E+C +FKI+HRNSTPY PK N AVEAANKNIKR++EK T TYKD
Sbjct: 1772 NAKNLNNKMMNEVCTQFKIHHRNSTPYRPKMNGAVEAANKNIKRILEKMTETYKD 1826

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BLAST of CsaV3_UNG135030 vs. NCBI nr
Match: PKI58257.1 (hypothetical protein CRG98_021339 [Punica granatum])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-14
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
           N KNLNN+++DELCE+FK++HRNSTPY P+ N AVEAANKNIK++IEK T TYKD
Sbjct: 67  NAKNLNNRIIDELCERFKVHHRNSTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 121

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BLAST of CsaV3_UNG135030 vs. TrEMBL
Match: tr|A0A2I0J2B4|A0A2I0J2B4_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_029803 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-15
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
           N K LNN+++DELCE+FKI+HRNSTPYHP+ N AVEAANKNIKR+IEK T TYKD
Sbjct: 75  NAKTLNNRIIDELCERFKIHHRNSTPYHPQMNGAVEAANKNIKRIIEKMTVTYKD 129

[Close]

BLAST of CsaV3_UNG135030 vs. TrEMBL
Match: tr|A0A2I0JPN5|A0A2I0JPN5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_021339 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
           N KNLNN+++DELCE+FK++HRNSTPY P+ N AVEAANKNIK++IEK T TYKD
Sbjct: 67  NAKNLNNRIIDELCERFKVHHRNSTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 121

[Close]

BLAST of CsaV3_UNG135030 vs. TrEMBL
Match: tr|A0A2I0LFE2|A0A2I0LFE2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000222 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-14
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1    NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
            N KNLNN+++DELCE+FK++HRNSTPY P+ N AVEAANKNIK++IEK T TYKD
Sbjct: 1323 NAKNLNNRIIDELCERFKVHHRNSTPYRPQMNGAVEAANKNIKKIIEKMTVTYKD 1377

[Close]

BLAST of CsaV3_UNG135030 vs. TrEMBL
Match: tr|A0A2I0KA48|A0A2I0KA48_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014154 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
           N KNLNNK++DELCE+FK+ HRNSTPY P+ N  VEAANKNIK++IEK T TYKD
Sbjct: 96  NAKNLNNKIIDELCEQFKVQHRNSTPYRPQMNGVVEAANKNIKKIIEKMTVTYKD 150

[Close]

BLAST of CsaV3_UNG135030 vs. TrEMBL
Match: tr|A0A2I0JXE9|A0A2I0JXE9_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_018678 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-14
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   NTKNLNNKMMDELCEKFKINHRNSTPYHPKTNVAVEAANKNIKRVIEKKTTTYKD 56
           N KNLNN+++DELCE+FKI+H NSTPY P+ N AVEAANKNIKR++EK T TYKD
Sbjct: 67  NAKNLNNEIIDELCERFKIHHHNSTPYRPQMNGAVEAANKNIKRIVEKMTVTYKD 121

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG135030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656202.1	3.2e-18	89.09	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like [Cucumis sa...	[more]
PKI49826.1	3.3e-15	76.36	hypothetical protein CRG98_029803 [Punica granatum]	[more]
XP_022728771.1	7.4e-15	76.36	LOW QUALITY PROTEIN: uncharacterized protein LOC111284343 [Durio zibethinus]	[more]
XP_022716542.1	1.3e-14	76.36	LOW QUALITY PROTEIN: uncharacterized protein LOC111275425 [Durio zibethinus]	[more]
PKI58257.1	1.6e-14	72.73	hypothetical protein CRG98_021339 [Punica granatum]	[more]

BLAST of CsaV3_UNG135030 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG135030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG135030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I0J2B4\|A0A2I0J2B4_PUNGR	2.2e-15	76.36	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_029803 PE=4 SV=1	[more]
tr\|A0A2I0JPN5\|A0A2I0JPN5_PUNGR	1.1e-14	72.73	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_021339 PE=4 SV=1	[more]
tr\|A0A2I0LFE2\|A0A2I0LFE2_PUNGR	1.1e-14	72.73	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000222 PE=4 SV=1	[more]
tr\|A0A2I0KA48\|A0A2I0KA48_PUNGR	2.4e-14	72.73	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014154 PE=4 SV=1	[more]
tr\|A0A2I0JXE9\|A0A2I0JXE9_PUNGR	2.4e-14	72.73	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_018678 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG135030.1	CsaV3_UNG135030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 1..56 e-value: 5.4E-13 score: 51.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..56 score: 9.13
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 4..53

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_UNG135030	Cucumber (Chinese Long) v3	cuccucB167
CsaV3_UNG135030	Cucumber (Chinese Long) v3	cuccucB194
CsaV3_UNG135030	Cucumber (Chinese Long) v3	cuccucB192
CsaV3_UNG135030	Silver-seed gourd	carcucB0984
CsaV3_UNG135030	Silver-seed gourd	carcucB1065
CsaV3_UNG135030	Cucumber (Gy14) v2	cgybcucB179
CsaV3_UNG135030	Cucumber (Gy14) v1	cgycucB104
CsaV3_UNG135030	Cucurbita maxima (Rimu)	cmacucB0400
CsaV3_UNG135030	Cucurbita maxima (Rimu)	cmacucB0858
CsaV3_UNG135030	Cucurbita moschata (Rifu)	cmocucB0396
CsaV3_UNG135030	Cucurbita moschata (Rifu)	cmocucB0844
CsaV3_UNG135030	Cucurbita pepo (Zucchini)	cpecucB0273
CsaV3_UNG135030	Cucurbita pepo (Zucchini)	cpecucB0515
CsaV3_UNG135030	Wild cucumber (PI 183967)	cpicucB228
CsaV3_UNG135030	Bottle gourd (USVL1VR-Ls)	cuclsiB340
CsaV3_UNG135030	Melon (DHL92) v3.5.1	cucmeB347
CsaV3_UNG135030	Melon (DHL92) v3.6.1	cucmedB339
CsaV3_UNG135030	Watermelon (Charleston Gray)	cucwcgB354
CsaV3_UNG135030	Watermelon (Charleston Gray)	cucwcgB356
CsaV3_UNG135030	Watermelon (97103) v1	cucwmB378
CsaV3_UNG135030	Watermelon (97103) v1	cucwmB379
CsaV3_UNG135030	Watermelon (97103) v2	cucwmbB345
CsaV3_UNG135030	Watermelon (97103) v2	cucwmbB346
CsaV3_UNG135030	Wax gourd	cucwgoB438
CsaV3_UNG135030	Wax gourd	cucwgoB439