CsaV3_UNG124970 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_UNG124970
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	ATP synthase subunit B
Location	scaffold66 : 37220 .. 37609 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACTAAGGAAACTAGAACAAGTACATACACTCATTACATTAATGGACTCCCGCGGAATCCCCATCACTTCTTCTTCTTCCTCCAATCGATTCATTGCCAATTTCCTTCTCCTTTTGGTACTTTCTCACTCAACTTCATCTCTGCTTTACGTTCTAAATTCCTCATCCAATTTGAACATTTCAATTCCTCCACTTCCCCTAGTAAAATGGTATGTTTCTTGATTGCAGCTTGATTTATTGGTGCTGATGAATCGTTGTTCTGATGTGAGTTTGTTTCATAATTGAATTGTATTTGTATGTTAGGTGCAACCATGTGGAGAGCTTGACTTTGACGATAAATTCGATTTGGTTTCTGAATACATGCCGAAGGTGAGTGCAAGCTAA

mRNA sequence

ATGGAAGAACTAAGGAAACTAGAACAAGTACATACACTCATTACATTAATGGACTCCCGCGGAATCCCCATCACTTCTTCTTCTTCCTCCAATCGATTCATTGCCAATTTCCTTCTCCTTTTGGTGCAACCATGTGGAGAGCTTGACTTTGACGATAAATTCGATTTGGTTTCTGAATACATGCCGAAGGTGAGTGCAAGCTAA

Coding sequence (CDS)

ATGGAAGAACTAAGGAAACTAGAACAAGTACATACACTCATTACATTAATGGACTCCCGCGGAATCCCCATCACTTCTTCTTCTTCCTCCAATCGATTCATTGCCAATTTCCTTCTCCTTTTGGTGCAACCATGTGGAGAGCTTGACTTTGACGATAAATTCGATTTGGTTTCTGAATACATGCCGAAGGTGAGTGCAAGCTAA

Protein sequence

MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEYMPKVSAS

Homology

[Close]

BLAST of CsaV3_UNG124970 vs. NCBI nr
Match: XP_004146929.1 (PREDICTED: uncharacterized protein LOC101211687 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-27
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY
Sbjct: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60

Query: 61 MPKVS 66
          MPK S
Sbjct: 61 MPKFS 65

[Close]

BLAST of CsaV3_UNG124970 vs. NCBI nr
Match: KGN53207.1 (hypothetical protein Csa_4G026840 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-27
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY
Sbjct: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60

Query: 61 MPKVS 66
          MPK S
Sbjct: 61 MPKFS 65

[Close]

BLAST of CsaV3_UNG124970 vs. NCBI nr
Match: XP_008453814.1 (PREDICTED: uncharacterized protein LOC103494428 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-24
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQVH+LITLM+SRGI +TSSSSSNRFIANF+LLLVQPCGELDFDDKFDLVSEY
Sbjct: 1  MEELRKLEQVHSLITLMESRGISMTSSSSSNRFIANFVLLLVQPCGELDFDDKFDLVSEY 60

Query: 61 MPKVS 66
          MPK S
Sbjct: 61 MPKFS 65

[Close]

BLAST of CsaV3_UNG124970 vs. NCBI nr
Match: XP_022929265.1 (uncharacterized protein LOC111435894 isoform X3 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 6.4e-21
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQV  LIT M+S GI +TSSSSSN+FIANF+LLLV+PCGELDF+DKF+LVSEY
Sbjct: 1  MEELRKLEQVQKLITSMESHGIAMTSSSSSNQFIANFVLLLVKPCGELDFEDKFNLVSEY 60

Query: 61 MPKVSAS 68
          MPKVS S
Sbjct: 61 MPKVSFS 67

[Close]

BLAST of CsaV3_UNG124970 vs. NCBI nr
Match: XP_022929263.1 (uncharacterized protein LOC111435894 isoform X1 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 6.4e-21
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQV  LIT M+S GI +TSSSSSN+FIANF+LLLV+PCGELDF+DKF+LVSEY
Sbjct: 1  MEELRKLEQVQKLITSMESHGIAMTSSSSSNQFIANFVLLLVKPCGELDFEDKFNLVSEY 60

Query: 61 MPKVSAS 68
          MPKVS S
Sbjct: 61 MPKVSFS 67

[Close]

BLAST of CsaV3_UNG124970 vs. TAIR10
Match: AT5G10320.1 (unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-13
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSS---SSNRFIANFLLLLVQPCGELDFDDKFDLV 60
          MEEL++LE+  T+++ +   G+  +SSS   SS+RF++N +L LVQPCGELD D K  L+
Sbjct: 1  MEELKRLEKFQTVVSSITCHGLLSSSSSDSASSSRFLSNLVLFLVQPCGELDLDSKLGLL 60

Query: 61 SEYMPKVS 66
          SE++PK+S
Sbjct: 61 SEFLPKIS 68

[Close]

BLAST of CsaV3_UNG124970 vs. TrEMBL
Match: tr|A0A0A0KXR8|A0A0A0KXR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026840 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.0e-27
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY
Sbjct: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60

Query: 61 MPKVS 66
          MPK S
Sbjct: 61 MPKFS 65

[Close]

BLAST of CsaV3_UNG124970 vs. TrEMBL
Match: tr|A0A1S3BX98|A0A1S3BX98_CUCME (uncharacterized protein LOC103494428 OS=Cucumis melo OX=3656 GN=LOC103494428 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQVH+LITLM+SRGI +TSSSSSNRFIANF+LLLVQPCGELDFDDKFDLVSEY
Sbjct: 1  MEELRKLEQVHSLITLMESRGISMTSSSSSNRFIANFVLLLVQPCGELDFDDKFDLVSEY 60

Query: 61 MPKVS 66
          MPK S
Sbjct: 61 MPKFS 65

[Close]

BLAST of CsaV3_UNG124970 vs. TrEMBL
Match: tr|A0A0B0PJ00|A0A0B0PJ00_GOSAR (ATP synthase subunit b 2 OS=Gossypium arboreum OX=29729 GN=F383_02542 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQ+HT +T M S     +SS  SNRFIAN +LLL+QPCGEL+ D KF L+SEY
Sbjct: 1  MEELRKLEQLHTTLTFMQSHNFVRSSSLDSNRFIANLVLLLLQPCGELNLDMKFRLLSEY 60

Query: 61 MPKVSAS 68
          +PK+S S
Sbjct: 61 LPKISVS 67

[Close]

BLAST of CsaV3_UNG124970 vs. TrEMBL
Match: tr|A0A1U8K8F7|A0A1U8K8F7_GOSHI (uncharacterized protein LOC107914395 OS=Gossypium hirsutum OX=3635 GN=LOC107914395 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-15
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQ+HT +T M S     +S+  SNRFIAN +LLL+QPCGEL+ D KF L+SEY
Sbjct: 1  MEELRKLEQLHTTLTFMQSHNFVPSSTLDSNRFIANLILLLLQPCGELNLDMKFRLLSEY 60

Query: 61 MPKVSAS 68
          +PK+S S
Sbjct: 61 LPKISVS 67

[Close]

BLAST of CsaV3_UNG124970 vs. TrEMBL
Match: tr|A0A0D2T6F8|A0A0D2T6F8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G113400 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-15
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MEELRKLEQVHTLITLMDSRGIPITSSSSSNRFIANFLLLLVQPCGELDFDDKFDLVSEY 60
          MEELRKLEQ+HT +T M S     +S+  SNRFIAN +LLL+QPCGEL+ D KF L+SEY
Sbjct: 1  MEELRKLEQLHTTLTFMQSHNFVPSSTLDSNRFIANLILLLLQPCGELNLDMKFRLLSEY 60

Query: 61 MPKVSAS 68
          +PK+S S
Sbjct: 61 LPKISVS 67

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG124970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146929.1	6.0e-27	98.46	PREDICTED: uncharacterized protein LOC101211687 [Cucumis sativus]	[more]
KGN53207.1	6.0e-27	98.46	hypothetical protein Csa_4G026840 [Cucumis sativus]	[more]
XP_008453814.1	2.1e-24	90.77	PREDICTED: uncharacterized protein LOC103494428 [Cucumis melo]	[more]
XP_022929265.1	6.4e-21	80.60	uncharacterized protein LOC111435894 isoform X3 [Cucurbita moschata]	[more]
XP_022929263.1	6.4e-21	80.60	uncharacterized protein LOC111435894 isoform X1 [Cucurbita moschata]	[more]

BLAST of CsaV3_UNG124970 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10320.1	1.6e-13	50.00	unknown protein	[more]

BLAST of CsaV3_UNG124970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG124970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXR8\|A0A0A0KXR8_CUCSA	4.0e-27	98.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026840 PE=4 SV=1	[more]
tr\|A0A1S3BX98\|A0A1S3BX98_CUCME	1.4e-24	90.77	uncharacterized protein LOC103494428 OS=Cucumis melo OX=3656 GN=LOC103494428 PE=...	[more]
tr\|A0A0B0PJ00\|A0A0B0PJ00_GOSAR	2.7e-15	64.18	ATP synthase subunit b 2 OS=Gossypium arboreum OX=29729 GN=F383_02542 PE=4 SV=1	[more]
tr\|A0A1U8K8F7\|A0A1U8K8F7_GOSHI	4.6e-15	62.69	uncharacterized protein LOC107914395 OS=Gossypium hirsutum OX=3635 GN=LOC1079143...	[more]
tr\|A0A0D2T6F8\|A0A0D2T6F8_GOSRA	4.6e-15	62.69	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G113400 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG124970.1	CsaV3_UNG124970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35754	FAMILY NOT NAMED	coord: 1..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_UNG124970	CsGy4G004410	Cucumber (Gy14) v2	cgybcucB179
CsaV3_UNG124970	MELO3C017604	Melon (DHL92) v3.5.1	cucmeB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_UNG124970	Cucumber (Chinese Long) v3	cuccucB167
CsaV3_UNG124970	Cucumber (Chinese Long) v3	cuccucB194
CsaV3_UNG124970	Cucumber (Chinese Long) v3	cuccucB192
CsaV3_UNG124970	Silver-seed gourd	carcucB0984
CsaV3_UNG124970	Silver-seed gourd	carcucB1065
CsaV3_UNG124970	Cucumber (Gy14) v1	cgycucB104
CsaV3_UNG124970	Cucurbita maxima (Rimu)	cmacucB0400
CsaV3_UNG124970	Cucurbita maxima (Rimu)	cmacucB0858
CsaV3_UNG124970	Cucurbita moschata (Rifu)	cmocucB0396
CsaV3_UNG124970	Cucurbita moschata (Rifu)	cmocucB0844
CsaV3_UNG124970	Cucurbita pepo (Zucchini)	cpecucB0273
CsaV3_UNG124970	Cucurbita pepo (Zucchini)	cpecucB0515
CsaV3_UNG124970	Wild cucumber (PI 183967)	cpicucB228
CsaV3_UNG124970	Bottle gourd (USVL1VR-Ls)	cuclsiB340
CsaV3_UNG124970	Melon (DHL92) v3.6.1	cucmedB339
CsaV3_UNG124970	Watermelon (Charleston Gray)	cucwcgB354
CsaV3_UNG124970	Watermelon (97103) v1	cucwmB379
CsaV3_UNG124970	Watermelon (97103) v2	cucwmbB345
CsaV3_UNG124970	Wax gourd	cucwgoB438
CsaV3_UNG124970	Wax gourd	cucwgoB439