CsaV3_UNG111840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG111840
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X3
Locationscaffold85 : 16963 .. 17415 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTGCCATTCTGAGAGACCAATCAGCTGGAACTAACAGTAGCTCTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAGAAGGCGCAAGTTATTTGACGAAGCCATACAAAAGCGTTCAGTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATCGAGGACTTGTTGGAGCAGACAACTAAGGTAAAATCTGGTTTGAGCTTCAATTCCATTACTTCATTCCATTTTTATTTTTATTTTTTCCTTCAAATCCTTTTGTTTTCCATTCTTTTTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTGTATCCTTCTATTAG

mRNA sequence

ATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTGCCATTCTGAGAGACCAATCAGCTGGAACTAACAGTAGCTCTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAGAAGGCGCAAGTTATTTGACGAAGCCATACAAAAGCGTTCAGTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATCGAGGACTTGTTGGAGCAGACAACTAAGGTAAAATCTGGTTTGAGCTTCAATTCCATTACTTCATTCCATTTTTATTTTTATTTTTTCCTTCAAATCCTTTTGTTTTCCATTCTTTTTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTGTATCCTTCTATTAG

Coding sequence (CDS)

ATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTGCCATTCTGAGAGACCAATCAGCTGGAACTAACAGTAGCTCTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAGAAGGCGCAAGTTATTTGACGAAGCCATACAAAAGCGTTCAGTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAATCTTCTGTAGTAACTTCACACGTTCCTGATGTCGCTTCCGCAATCGAGGACTTGTTGGAGCAGACAACTAAGGTAAAATCTGGTTTGAGCTTCAATTCCATTACTTCATTCCATTTTTATTTTTATTTTTTCCTTCAAATCCTTTTGTTTTCCATTCTTTTTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTGTATCCTTCTATTAG

Protein sequence

MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSSTQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHFYFYFFLQILLFSILFKIQDQKSPGKTGCDKSVSFY
Homology
[Close]
BLAST of CsaV3_UNG111840 vs. NCBI nr
Match: XP_016899869.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_016899870.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIANES+SQFPIHS I RDQSAGTN+SSI A E+ISSTK++RKLFDEAIQKR +F+GNSS
Sbjct: 771 MIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSS 830

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           TQSDCNLNSTKQTTSKSSVVT+HVPDVASAIEDLLEQTT                     
Sbjct: 831 TQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTT--------------------- 886

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KIQDQKSPGKTGCDKS+
Sbjct: 891 ----------KIQDQKSPGKTGCDKSI 886

[Close]
BLAST of CsaV3_UNG111840 vs. NCBI nr
Match: XP_016899871.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_016899872.1 PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIANES+SQFPIHS I RDQSAGTN+SSI A E+ISSTK++RKLFDEAIQKR +F+GNSS
Sbjct: 771 MIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSS 830

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           TQSDCNLNSTKQTTSKSSVVT+HVPDVASAIEDLLEQTT                     
Sbjct: 831 TQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTT--------------------- 886

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KIQDQKSPGKTGCDKS+
Sbjct: 891 ----------KIQDQKSPGKTGCDKSI 886

[Close]
BLAST of CsaV3_UNG111840 vs. NCBI nr
Match: XP_008444202.1 (PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIANES+SQFPIHS I RDQSAGTN+SSI A E+ISSTK++RKLFDEAIQKR +F+GNSS
Sbjct: 719 MIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSS 778

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           TQSDCNLNSTKQTTSKSSVVT+HVPDVASAIEDLLEQTT                     
Sbjct: 779 TQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTT--------------------- 834

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KIQDQKSPGKTGCDKS+
Sbjct: 839 ----------KIQDQKSPGKTGCDKSI 834

[Close]
BLAST of CsaV3_UNG111840 vs. NCBI nr
Match: XP_022936988.1 (DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata])

HSP 1 Score: 160.2 bits (404), Expect = 5.4e-36
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIA E  SQFP HSAILRDQSAGTNSSS+G  E+IS T ++RK  DE IQKR +FVGNS 
Sbjct: 771 MIAGEGESQFPTHSAILRDQSAGTNSSSVGEVEQISFTNKKRKFLDEPIQKRPIFVGNSL 830

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           T  DCNLNST++TTSKSSVVTSHVPDVA+AIEDLLEQT+                     
Sbjct: 831 THFDCNLNSTRETTSKSSVVTSHVPDVAAAIEDLLEQTS--------------------- 886

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KI DQKSPGKTGCDKS+
Sbjct: 891 ----------KIHDQKSPGKTGCDKSI 886

[Close]
BLAST of CsaV3_UNG111840 vs. NCBI nr
Match: XP_022936987.1 (DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 160.2 bits (404), Expect = 5.4e-36
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIA E  SQFP HSAILRDQSAGTNSSS+G  E+IS T ++RK  DE IQKR +FVGNS 
Sbjct: 774 MIAGEGESQFPTHSAILRDQSAGTNSSSVGEVEQISFTNKKRKFLDEPIQKRPIFVGNSL 833

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           T  DCNLNST++TTSKSSVVTSHVPDVA+AIEDLLEQT+                     
Sbjct: 834 THFDCNLNSTRETTSKSSVVTSHVPDVAAAIEDLLEQTS--------------------- 889

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KI DQKSPGKTGCDKS+
Sbjct: 894 ----------KIHDQKSPGKTGCDKSI 889

[Close]
BLAST of CsaV3_UNG111840 vs. TrEMBL
Match: tr|A0A1S4DV57|A0A1S4DV57_CUCME (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.8e-43
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIANES+SQFPIHS I RDQSAGTN+SSI A E+ISSTK++RKLFDEAIQKR +F+GNSS
Sbjct: 771 MIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSS 830

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           TQSDCNLNSTKQTTSKSSVVT+HVPDVASAIEDLLEQTT                     
Sbjct: 831 TQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTT--------------------- 886

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KIQDQKSPGKTGCDKS+
Sbjct: 891 ----------KIQDQKSPGKTGCDKSI 886

[Close]
BLAST of CsaV3_UNG111840 vs. TrEMBL
Match: tr|A0A1S4DV59|A0A1S4DV59_CUCME (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.8e-43
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIANES+SQFPIHS I RDQSAGTN+SSI A E+ISSTK++RKLFDEAIQKR +F+GNSS
Sbjct: 771 MIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSS 830

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           TQSDCNLNSTKQTTSKSSVVT+HVPDVASAIEDLLEQTT                     
Sbjct: 831 TQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTT--------------------- 886

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KIQDQKSPGKTGCDKS+
Sbjct: 891 ----------KIQDQKSPGKTGCDKSI 886

[Close]
BLAST of CsaV3_UNG111840 vs. TrEMBL
Match: tr|A0A1S3BAL1|A0A1S3BAL1_CUCME (DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.8e-43
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGAAERISSTKRRRKLFDEAIQKRSVFVGNSS 60
           MIANES+SQFPIHS I RDQSAGTN+SSI A E+ISSTK++RKLFDEAIQKR +F+GNSS
Sbjct: 719 MIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSS 778

Query: 61  TQSDCNLNSTKQTTSKSSVVTSHVPDVASAIEDLLEQTTKVKSGLSFNSITSFHXXXXXX 120
           TQSDCNLNSTKQTTSKSSVVT+HVPDVASAIEDLLEQTT                     
Sbjct: 779 TQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTT--------------------- 834

Query: 121 XQILLFSILFKIQDQKSPGKTGCDKSV 148
                     KIQDQKSPGKTGCDKS+
Sbjct: 839 ----------KIQDQKSPGKTGCDKSI 834

[Close]
BLAST of CsaV3_UNG111840 vs. TrEMBL
Match: tr|W9R9M9|W9R9M9_9ROSA (DNA topoisomerase 2-binding protein 1-A OS=Morus notabilis OX=981085 GN=L484_013403 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 48/152 (31.58%), Postives = 74/152 (48.68%), Query Frame = 0 

Query: 2   IANESVSQFPIHSAILRDQSA--GTNSSSIG---AAERISSTKRRRKLFDEAIQKRSVFV 61
           I+ ++ SQFP HS  ++   +  G  + S+G    A+ +S+  ++ +L ++  Q   +  
Sbjct: 667 ISGDNPSQFPSHSRNIKTSPSRVGGRNGSVGEGEGAKHLSTLSKKARLLEDEAQTCLLST 726

Query: 62  GNSSTQSDCNLNSTKQTTSKSSVVTSH-VPDVASAIEDLLEQTTKVKSGLSFNSITSFHX 121
           G   +   CN NS     +K +   SH VPDVA+AIEDLLEQT+                
Sbjct: 727 GVHGSAPVCNTNSRDDNMAKDTNEMSHVVPDVAAAIEDLLEQTS---------------- 786

Query: 122 XXXXXXQILLFSILFKIQDQKSPGKTGCDKSV 148
                          KI DQKSPG+TGCD+++
Sbjct: 787 ---------------KIHDQKSPGRTGCDETL 787

[Close]
BLAST of CsaV3_UNG111840 vs. TrEMBL
Match: tr|A0A2K2AII1|A0A2K2AII1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G182500v3 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 0 

Query: 1   MIANESVSQFPIHSAILRDQSAGTNSSSIGA----AERISSTKRRRKLFDEAIQKRSVFV 60
           M++ E+ SQF      LR+ SA    S I +    A++     ++ K+F +  QK  +  
Sbjct: 500 MMSGENASQFITQPQGLRNSSAQNGGSLINSFMEEAQQSIDICKKAKIFKDNDQKSLLSS 559

Query: 61  GNSSTQSDCNLNSTKQTTSKSSVVTSH-VPDVASAIEDLLEQTTKVKSGLSFNSITSFHX 120
               + S  N+NST+   +K +  +SH +PDVA+AIEDLLEQT+                
Sbjct: 560 RVHLSDSTLNMNSTEGDNAKDNGESSHDIPDVAAAIEDLLEQTS---------------- 619

Query: 121 XXXXXXQILLFSILFKIQDQKSPGKTGCDKSV 148
                          KIQDQKSPG++GCDKS+
Sbjct: 620 ---------------KIQDQKSPGRSGCDKSL 620

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG111840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899869.11.3e-4269.39PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X1 [Cucumis melo] >XP_0... [more]
XP_016899871.11.3e-4269.39PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X2 [Cucumis melo] >XP_0... [more]
XP_008444202.11.3e-4269.39PREDICTED: DNA topoisomerase 2-binding protein 1 isoform X3 [Cucumis melo][more]
XP_022936988.15.4e-3661.22DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata][more]
XP_022936987.15.4e-3661.22DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita moschata][more]
BLAST of CsaV3_UNG111840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG111840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG111840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DV57|A0A1S4DV57_CUCME8.8e-4369.39DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S4DV59|A0A1S4DV59_CUCME8.8e-4369.39DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S3BAL1|A0A1S3BAL1_CUCME8.8e-4369.39DNA topoisomerase 2-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|W9R9M9|W9R9M9_9ROSA4.5e-0731.58DNA topoisomerase 2-binding protein 1-A OS=Morus notabilis OX=981085 GN=L484_013... [more]
tr|A0A2K2AII1|A0A2K2AII1_POPTR5.9e-0733.55Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G182500v3 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG111840.1CsaV3_UNG111840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_UNG111840CsaV3_4G028030Cucumber (Chinese Long) v3cuccucB177
The following block(s) are covering this gene:

None