CsaV3_7G032100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G032100
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein, mitochondrial
Locationchr7 : 20344082 .. 20344492 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGAAGGGTGTTCGTAAGGATTTGCAATCGTACTTGTTATATATGGATATACAATGCAAAACTGGGAAGTCTTGGGAGGCTGTTAAATTGTACATGGAGATGAAAAATAAGGGAATGAAATTGGATGTTGTGGCCTATAATACAGCGATTCATGCAGTTGGGATTTCGGAAGATGTCGATTTCACCAACAGAGTGTTTCATGAGATGAAGGGAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGATTCAAGGATGCTCATGTGATTCTCGACCAAATGCTCAAATACTGTCCACCGAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCTGAAAGAGATTCTCATGTTATCGACAGGATGA

mRNA sequence

ATGGGTAAGAAGGGTGTTCGTAAGGATTTGCAATCGTACTTGTTATATATGGATATACAATGCAAAACTGGGAAGTCTTGGGAGGCTGTTAAATTGTACATGGAGATGAAAAATAAGGGAATGAAATTGGATGTTGTGGCCTATAATACAGCGATTCATGCAGTTGGGATTTCGGAAGATGTCGATTTCACCAACAGAGTGTTTCATGAGATGAAGGGAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGATTCAAGGATGCTCATGTGATTCTCGACCAAATGCTCAAATACTGTCCACCGAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCTGAAAGAGATTCTCATGTTATCGACAGGATGA

Coding sequence (CDS)

ATGGGTAAGAAGGGTGTTCGTAAGGATTTGCAATCGTACTTGTTATATATGGATATACAATGCAAAACTGGGAAGTCTTGGGAGGCTGTTAAATTGTACATGGAGATGAAAAATAAGGGAATGAAATTGGATGTTGTGGCCTATAATACAGCGATTCATGCAGTTGGGATTTCGGAAGATGTCGATTTCACCAACAGAGTGTTTCATGAGATGAAGGGAATGGGGTGTAAGCCTAACGTTGTGACTTGCAATACTATTATTAAGCTATTTTGTGAGAATGGAAGATTCAAGGATGCTCATGTGATTCTCGACCAAATGCTCAAATACTGTCCACCGAATGTTATCACCTATCATTGTTTTTTCAGGTCTCTTGAAAAGCTGAAAGAGATTCTCATGTTATCGACAGGATGA

Protein sequence

MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISEDVDFTNRVFHEMKGMGCKPNVVTCNTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCFFRSLEKLKEILMLSTG
Homology
[Close]
BLAST of CsaV3_7G032100 vs. NCBI nr
Match: XP_011659789.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.8e-62
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED
Sbjct: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60

Query: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120
           VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF
Sbjct: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120

Query: 121 FRSLEKLKEILMLSTG 137
           FRSLEKLKEILMLSTG
Sbjct: 121 FRSLEKLKEILMLSTG 136

[Close]
BLAST of CsaV3_7G032100 vs. NCBI nr
Match: KGN45238.1 (hypothetical protein Csa_7G432190 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 8.9e-62
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED
Sbjct: 141 MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 200

Query: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120
           VDFTNRVFHXXXXXXXXXXXXXXX IIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF
Sbjct: 201 VDFTNRVFHXXXXXXXXXXXXXXXXIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 260

Query: 121 FRSLEKLKEILMLSTG 137
           FRSLEKLKEILMLSTG
Sbjct: 261 FRSLEKLKEILMLSTG 276

[Close]
BLAST of CsaV3_7G032100 vs. NCBI nr
Match: EAY95771.1 (hypothetical protein OsI_17645 [Oryza sativa Indica Group])

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M  +GV KDL SY +YMD   K+GK W+A K++ EMK KGM +DVVAYNTAIH+VG+++ 
Sbjct: 1   MDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVGLAQG 60

Query: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
           VDF  R++                TI+KL C+ GRFK+ +  + QM K+   PNV+TYHC
Sbjct: 61  VDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLTYHC 120

Query: 121 FFRSLEKLKEILML 134
           FF+ L + +E+L L
Sbjct: 121 FFQYLSRPQEVLGL 134

[Close]
BLAST of CsaV3_7G032100 vs. NCBI nr
Match: PLY74020.1 (hypothetical protein LSAT_7X8860 [Lactuca sativa])

HSP 1 Score: 97.4 bits (241), Expect = 3.9e-17
Identity = 71/135 (52.59%), Postives = 80/135 (59.26%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISE- 60
           M + G+ KDL SY +YMDIQCK+GK W+AVKLY EMK KG+KL VVAYNT I A+G+SE 
Sbjct: 1   MDEDGISKDLYSYSIYMDIQCKSGKPWKAVKLYREMKKKGIKLHVVAYNTVIRAIGVSEG 60

Query: 61  -DVDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYH 120
            DV        XXXXXXXXXXXXXXX                             VITYH
Sbjct: 61  VDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITYH 120

Query: 121 CFFRSLEKLKEILML 134
           C FR LEK  EIL +
Sbjct: 121 CIFRCLEKTNEILAM 135

[Close]
BLAST of CsaV3_7G032100 vs. NCBI nr
Match: KMZ70425.1 (Pentatricopeptide repeat-containing protein [Zostera marina])

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M K GV+KDL SY +YM I  K+GK  + +K+Y  +K KG  LD VAYN  + AVG++  
Sbjct: 186 MDKDGVQKDLHSYSIYMHILLKSGKPCKTIKVYKVIKKKGFILDTVAYNIVVQAVGMANG 245

Query: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLK--YCPPNVITYH 120
            D + ++F                 +IK  C  GRF +A+  L QM +     P+VITYH
Sbjct: 246 ADDSIKMFMEMTELGVRPNNVTFNIVIKSLCYWGRFAEAYGFLHQMGRGDRPAPDVITYH 305

Query: 121 CFFRSLEKLKEILML 134
            FF+ L + KE+L L
Sbjct: 306 SFFQYLNRPKEVLQL 320

[Close]
BLAST of CsaV3_7G032100 vs. TAIR10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSW 28
           M  +GV KDL SY +YMDI CK+GK W
Sbjct: 215 MDTEGVTKDLFSYSIYMDIMCKSGKPW 241

[Close]
BLAST of CsaV3_7G032100 vs. TrEMBL
Match: tr|A0A0A0K6U8|A0A0A0K6U8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432190 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.9e-62
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED
Sbjct: 141 MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 200

Query: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 120
           VDFTNRVFHXXXXXXXXXXXXXXX IIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF
Sbjct: 201 VDFTNRVFHXXXXXXXXXXXXXXXXIIKLFCENGRFKDAHVILDQMLKYCPPNVITYHCF 260

Query: 121 FRSLEKLKEILMLSTG 137
           FRSLEKLKEILMLSTG
Sbjct: 261 FRSLEKLKEILMLSTG 276

[Close]
BLAST of CsaV3_7G032100 vs. TrEMBL
Match: tr|A2XY61|A2XY61_ORYSI (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_17645 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.5e-29
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M  +GV KDL SY +YMD   K+GK W+A K++ EMK KGM +DVVAYNTAIH+VG+++ 
Sbjct: 1   MDSRGVAKDLHSYSIYMDALAKSGKPWKAFKVFKEMKQKGMAIDVVAYNTAIHSVGLAQG 60

Query: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKY-CPPNVITYHC 120
           VDF  R++                TI+KL C+ GRFK+ +  + QM K+   PNV+TYHC
Sbjct: 61  VDFAIRLYRQMVDAGCKPNASTFNTIVKLLCKEGRFKEGYAFVQQMHKFGIEPNVLTYHC 120

Query: 121 FFRSLEKLKEILML 134
           FF+ L + +E+L L
Sbjct: 121 FFQYLSRPQEVLGL 134

[Close]
BLAST of CsaV3_7G032100 vs. TrEMBL
Match: tr|A0A2J6KG08|A0A2J6KG08_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X8860 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 71/135 (52.59%), Postives = 80/135 (59.26%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISE- 60
           M + G+ KDL SY +YMDIQCK+GK W+AVKLY EMK KG+KL VVAYNT I A+G+SE 
Sbjct: 1   MDEDGISKDLYSYSIYMDIQCKSGKPWKAVKLYREMKKKGIKLHVVAYNTVIRAIGVSEG 60

Query: 61  -DVDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLKYCPPNVITYH 120
            DV        XXXXXXXXXXXXXXX                             VITYH
Sbjct: 61  VDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITYH 120

Query: 121 CFFRSLEKLKEILML 134
           C FR LEK  EIL +
Sbjct: 121 CIFRCLEKTNEILAM 135

[Close]
BLAST of CsaV3_7G032100 vs. TrEMBL
Match: tr|A0A0K9PQA0|A0A0K9PQA0_ZOSMR (Pentatricopeptide repeat-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_19G00070 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-17
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 0 

Query: 1   MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
           M K GV+KDL SY +YM I  K+GK  + +K+Y  +K KG  LD VAYN  + AVG++  
Sbjct: 186 MDKDGVQKDLHSYSIYMHILLKSGKPCKTIKVYKVIKKKGFILDTVAYNIVVQAVGMANG 245

Query: 61  VDFTNRVFHXXXXXXXXXXXXXXXTIIKLFCENGRFKDAHVILDQMLK--YCPPNVITYH 120
            D + ++F                 +IK  C  GRF +A+  L QM +     P+VITYH
Sbjct: 246 ADDSIKMFMEMTELGVRPNNVTFNIVIKSLCYWGRFAEAYGFLHQMGRGDRPAPDVITYH 305

Query: 121 CFFRSLEKLKEILML 134
            FF+ L + KE+L L
Sbjct: 306 SFFQYLNRPKEVLQL 320

[Close]
BLAST of CsaV3_7G032100 vs. TrEMBL
Match: tr|A0A068TQD2|A0A068TQD2_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00022214001 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0 

Query: 1  MGKKGVRKDLQSYLLYMDIQCKTGKSWEAVKLYMEMKNKGMKLDVVAYNTAIHAVGISED 60
          M K+G+ KDL SY +YMDIQCK+GK W AVKL+ EMK KG+KLDVVAYNT + A+GISE 
Sbjct: 1  MDKRGIPKDLHSYSIYMDIQCKSGKPWRAVKLFKEMKTKGVKLDVVAYNTLVRAIGISEG 60

Query: 61 VD 63
          VD
Sbjct: 61 VD 62

The following BLAST results are available for this feature:
BLAST of CsaV3_7G032100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659789.11.8e-62100.00PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial-... [more]
KGN45238.18.9e-6299.26hypothetical protein Csa_7G432190 [Cucumis sativus][more]
EAY95771.11.3e-2847.76hypothetical protein OsI_17645 [Oryza sativa Indica Group][more]
PLY74020.13.9e-1752.59hypothetical protein LSAT_7X8860 [Lactuca sativa][more]
KMZ70425.16.7e-1740.00Pentatricopeptide repeat-containing protein [Zostera marina][more]
BLAST of CsaV3_7G032100 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80550.17.9e-0462.96Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of CsaV3_7G032100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G032100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K6U8|A0A0A0K6U8_CUCSA5.9e-6299.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432190 PE=4 SV=1[more]
tr|A2XY61|A2XY61_ORYSI8.5e-2947.76Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_17645 PE=4... [more]
tr|A0A2J6KG08|A0A2J6KG08_LACSA2.6e-1752.59Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X8860 PE=4 SV=1[more]
tr|A0A0K9PQA0|A0A0K9PQA0_ZOSMR4.4e-1740.00Pentatricopeptide repeat-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_... [more]
tr|A0A068TQD2|A0A068TQD2_COFCA1.3e-1669.35Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00022214001 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G032100.1CsaV3_7G032100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 81..108
e-value: 4.0E-7
score: 27.8
coord: 46..80
e-value: 3.4E-5
score: 21.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 32..92
e-value: 1.2E-14
score: 54.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 9.186
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 10.052
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..109
score: 9.942
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..68
e-value: 2.6E-11
score: 45.3
coord: 69..133
e-value: 2.2E-16
score: 61.9
NoneNo IPR availablePANTHERPTHR24015:SF812SUBFAMILY NOT NAMEDcoord: 4..133
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 4..133

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G032100Cla015339Watermelon (97103) v1cucwmB591
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G032100Wax gourdcucwgoB730
CsaV3_7G032100Cucumber (Chinese Long) v3cuccucB186
CsaV3_7G032100Cucumber (Chinese Long) v3cuccucB189
CsaV3_7G032100Silver-seed gourdcarcucB0167
CsaV3_7G032100Silver-seed gourdcarcucB1074
CsaV3_7G032100Cucumber (Gy14) v2cgybcucB347
CsaV3_7G032100Cucumber (Gy14) v1cgycucB107
CsaV3_7G032100Cucumber (Gy14) v1cgycucB131
CsaV3_7G032100Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G032100Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G032100Cucurbita moschata (Rifu)cmocucB0317
CsaV3_7G032100Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G032100Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G032100Cucurbita pepo (Zucchini)cpecucB0188
CsaV3_7G032100Cucurbita pepo (Zucchini)cpecucB0422
CsaV3_7G032100Wild cucumber (PI 183967)cpicucB249
CsaV3_7G032100Wild cucumber (PI 183967)cpicucB414
CsaV3_7G032100Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G032100Bottle gourd (USVL1VR-Ls)cuclsiB568
CsaV3_7G032100Melon (DHL92) v3.5.1cucmeB537
CsaV3_7G032100Melon (DHL92) v3.5.1cucmeB582
CsaV3_7G032100Melon (DHL92) v3.6.1cucmedB525
CsaV3_7G032100Melon (DHL92) v3.6.1cucmedB569
CsaV3_7G032100Watermelon (Charleston Gray)cucwcgB546
CsaV3_7G032100Watermelon (97103) v1cucwmB616
CsaV3_7G032100Watermelon (97103) v2cucwmbB580
CsaV3_7G032100Watermelon (97103) v2cucwmbB592