CsaV3_7G032090 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATCGACGGGGTCAAGTCCTTGGATAGCTGCCCCATTTGGAGTTTCTACTATTGTTCTATTCGTATGTTGGAAGTTTATACTAAATATATATAAATGCAACAAAATGTAATGTCAAAATTTATGAATGTTAATAAAACTTTTGAAAATAAATGTTATTTTTCAATAAACTATGAAGCTCATAGGTTTTTATTTATTTATTTTTATTTGAAAAAGATAAAAATGAATAAGTATTCCCTTAGATTGGAAGATTATTTTAAATAATAAAACTTATGAAAATATTTACAAATAATAGATATTGATAGATTATTATATGTGTCTATCATGAAATAAATCAGATAGACATAGATAGTTGTCTATCATATATTTGAAAATAACTTGGTGAAAATAACGGTTAACATTTAACTCTCTTTAAATTTATAAGGACTTAGTTTAATGGTTTCTTATAGTTAATTCAATATAAGGTAACATCTTGACTAAAATTATACTCTCCATTCTCCACCTTTAAGTGAACTTTTGGTGAATCATTAACGTTTAGATCTATTTGAAGTTTCTTTATAGACTAACAAAGTCATCAATTGTGCTTCATTTTGGTGTGCTTTCTTGCAAATAGTATTCATCTCTTTTGTTTTACCTTTATTTGGCGTGACTTGTTAAGTTGTTTGTTTGGGTTGTGTTAAAAAACTAAAGTTGAAATAAGATGGAGTGGTTGAGATGGTTCAACTTGCACTATCTTATGAGTAACTGTATTGGGATGACTATTTGAGCTTATAGATTTGTAAGCGTGTCTTCAACTTTTTTAAGAAACAAATCAACTTTGAAAGCGGAGGAAAACATCCTTTTAGGAGTGGCAAAGAAAACGACAATGGCAAGGTAGTCCAACAAAGTCACACAACAAAATGACCAACTACCTAACTCGTTCAAGAATCATCAATTTTGACCTTGTTATGCTTTTACTTACACCAACAACACCGTCACTAAATCAATTAACGCACGATGAGATGGATAATTTGGCATTTGCTCTATTTTTAGCGTGATATAGCAATAGGTTTTATGAGTATGTCCAAATGAATTCTACCTCGTTTTAGGGAGATTTGCTCGTTTGTTCTCTCTCATCTCATTCCGACAACTATTCCCTTTCCAATACAAACTATTTTCAATTAAAGGAGATCTATTTAGTTACAAAATTAAGTCTTTATTTACGTAAATGTCTTCCAATTTAAAACACTCAAAATAACAGTGTATCAGTATTGTAATTGATGTATATTATATTAGTTCAGTGTAACAAATATAAGAAGCGTATATCAAATGCATAAATAGTGTATATCAATGTATGTATGGTAAATTGTACTTGCATTTTATTAATTTTTCCTTCGGTTCCCGCCGTTTCCCTCTCTCTTTTCTCTACTTCTCCGACGTGTTTCTCCGCTGGCAACCATTTTATTTTCTATCAATACAATCAACAGCCAGAGTTCGATTTCAAGTTCAACAGCTCAGAGTCTCCTGCTGTCCGTGAGGCGCTTGATTCTTACTGCAATGACCGAAGGCGATCATACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACGCCACTGAGACCCAAACTCGCATGCTGGACATTCTCGGTAAGTTCTTCGAGTTCGATCTTTCCTGGGTCTTGATTCACCATATGCAATAATCGCCATTTGCTTCACCTGATCACGCCACGTTTCGAATTTTGTTAGAGCTCTTATCACCTTTATCTCCCATCTATTTTATCCCATTTCTGACTAATCTTTATGCGTCGACCCCTTTAGTTAGTGAAGCGATTGCTGCTTATGAGGGATTGCGGGAGTTTAAATTGAGGGATGAAACTTCGTTTTGTAATCTTATTGATGCACTTTATGAGGGATTGCGATTCGAGTACGAAGATTCATAA ATGTCATCGACGGGGTCAAGTCCTTGGATAGCTGCCCCATTTGGAGTTTCTACTATTGTTCTATTCCCAGAGTTCGATTTCAAGTTCAACAGCTCAGAGTCTCCTGCTGTCCGTGAGGCGCTTGATTCTTACTGCAATGACCGAAGGCGATCATACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACGCCACTGAGACCCAAACTCGCATGCTGGACATTCTCGTTAGTGAAGCGATTGCTGCTTATGAGGGATTGCGGGAGTTTAAATTGAGGGATGAAACTTCGTTTTGTAATCTTATTGATGCACTTTATGAGGGATTGCGATTCGAGTACGAAGATTCATAA ATGTCATCGACGGGGTCAAGTCCTTGGATAGCTGCCCCATTTGGAGTTTCTACTATTGTTCTATTCCCAGAGTTCGATTTCAAGTTCAACAGCTCAGAGTCTCCTGCTGTCCGTGAGGCGCTTGATTCTTACTGCAATGACCGAAGGCGATCATACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACGCCACTGAGACCCAAACTCGCATGCTGGACATTCTCGTTAGTGAAGCGATTGCTGCTTATGAGGGATTGCGGGAGTTTAAATTGAGGGATGAAACTTCGTTTTGTAATCTTATTGATGCACTTTATGAGGGATTGCGATTCGAGTACGAAGATTCATAA MSSTGSSPWIAAPFGVSTIVLFPEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEAIAAYEGLREFKLRDETSFCNLIDALYEGLRFEYEDS
BLAST of CsaV3_7G032090 vs. NCBI nr
Match: KGN45238.1 (hypothetical protein Csa_7G432190 [Cucumis sativus]) HSP 1 Score: 193.4 bits (490), Expect = 4.5e-46 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_008461152.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis melo]) HSP 1 Score: 132.9 bits (333), Expect = 7.3e-28 Identity = 78/146 (53.42%), Postives = 81/146 (55.48%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_011659515.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis sativus] >KGN45236.1 hypothetical protein Csa_7G432170 [Cucumis sativus]) HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27 Identity = 78/146 (53.42%), Postives = 80/146 (54.79%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_022953157.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953158.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953159.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata]) HSP 1 Score: 127.1 bits (318), Expect = 4.0e-26 Identity = 77/152 (50.66%), Postives = 79/152 (51.97%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_022991827.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991828.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991829.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima]) HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25 Identity = 77/152 (50.66%), Postives = 78/152 (51.32%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. TAIR10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 73.9 bits (180), Expect = 7.3e-14 Identity = 55/152 (36.18%), Postives = 67/152 (44.08%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. Swiss-Prot
Match: sp|Q9M8M3|PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12 Identity = 55/152 (36.18%), Postives = 67/152 (44.08%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A0A0K6U8|A0A0A0K6U8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432190 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 3.0e-46 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A1S3CFA1|A0A1S3CFA1_CUCME (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499823 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 4.8e-28 Identity = 78/146 (53.42%), Postives = 81/146 (55.48%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A0A0KBR1|A0A0A0KBR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432170 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 8.2e-28 Identity = 78/146 (53.42%), Postives = 80/146 (54.79%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A2P5BS69|A0A2P5BS69_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_214690 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13 Identity = 56/151 (37.09%), Postives = 67/151 (44.37%), Query Frame = 0
BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A2P6QRD7|A0A2P6QRD7_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0394981 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13 Identity = 47/114 (41.23%), Postives = 55/114 (48.25%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |