CsaV3_7G032090 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G032090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At1g80550, mitochondrial
Locationchr7 : 20342088 .. 20344017 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCGACGGGGTCAAGTCCTTGGATAGCTGCCCCATTTGGAGTTTCTACTATTGTTCTATTCGTATGTTGGAAGTTTATACTAAATATATATAAATGCAACAAAATGTAATGTCAAAATTTATGAATGTTAATAAAACTTTTGAAAATAAATGTTATTTTTCAATAAACTATGAAGCTCATAGGTTTTTATTTATTTATTTTTATTTGAAAAAGATAAAAATGAATAAGTATTCCCTTAGATTGGAAGATTATTTTAAATAATAAAACTTATGAAAATATTTACAAATAATAGATATTGATAGATTATTATATGTGTCTATCATGAAATAAATCAGATAGACATAGATAGTTGTCTATCATATATTTGAAAATAACTTGGTGAAAATAACGGTTAACATTTAACTCTCTTTAAATTTATAAGGACTTAGTTTAATGGTTTCTTATAGTTAATTCAATATAAGGTAACATCTTGACTAAAATTATACTCTCCATTCTCCACCTTTAAGTGAACTTTTGGTGAATCATTAACGTTTAGATCTATTTGAAGTTTCTTTATAGACTAACAAAGTCATCAATTGTGCTTCATTTTGGTGTGCTTTCTTGCAAATAGTATTCATCTCTTTTGTTTTACCTTTATTTGGCGTGACTTGTTAAGTTGTTTGTTTGGGTTGTGTTAAAAAACTAAAGTTGAAATAAGATGGAGTGGTTGAGATGGTTCAACTTGCACTATCTTATGAGTAACTGTATTGGGATGACTATTTGAGCTTATAGATTTGTAAGCGTGTCTTCAACTTTTTTAAGAAACAAATCAACTTTGAAAGCGGAGGAAAACATCCTTTTAGGAGTGGCAAAGAAAACGACAATGGCAAGGTAGTCCAACAAAGTCACACAACAAAATGACCAACTACCTAACTCGTTCAAGAATCATCAATTTTGACCTTGTTATGCTTTTACTTACACCAACAACACCGTCACTAAATCAATTAACGCACGATGAGATGGATAATTTGGCATTTGCTCTATTTTTAGCGTGATATAGCAATAGGTTTTATGAGTATGTCCAAATGAATTCTACCTCGTTTTAGGGAGATTTGCTCGTTTGTTCTCTCTCATCTCATTCCGACAACTATTCCCTTTCCAATACAAACTATTTTCAATTAAAGGAGATCTATTTAGTTACAAAATTAAGTCTTTATTTACGTAAATGTCTTCCAATTTAAAACACTCAAAATAACAGTGTATCAGTATTGTAATTGATGTATATTATATTAGTTCAGTGTAACAAATATAAGAAGCGTATATCAAATGCATAAATAGTGTATATCAATGTATGTATGGTAAATTGTACTTGCATTTTATTAATTTTTCCTTCGGTTCCCGCCGTTTCCCTCTCTCTTTTCTCTACTTCTCCGACGTGTTTCTCCGCTGGCAACCATTTTATTTTCTATCAATACAATCAACAGCCAGAGTTCGATTTCAAGTTCAACAGCTCAGAGTCTCCTGCTGTCCGTGAGGCGCTTGATTCTTACTGCAATGACCGAAGGCGATCATACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACGCCACTGAGACCCAAACTCGCATGCTGGACATTCTCGGTAAGTTCTTCGAGTTCGATCTTTCCTGGGTCTTGATTCACCATATGCAATAATCGCCATTTGCTTCACCTGATCACGCCACGTTTCGAATTTTGTTAGAGCTCTTATCACCTTTATCTCCCATCTATTTTATCCCATTTCTGACTAATCTTTATGCGTCGACCCCTTTAGTTAGTGAAGCGATTGCTGCTTATGAGGGATTGCGGGAGTTTAAATTGAGGGATGAAACTTCGTTTTGTAATCTTATTGATGCACTTTATGAGGGATTGCGATTCGAGTACGAAGATTCATAA

mRNA sequence

ATGTCATCGACGGGGTCAAGTCCTTGGATAGCTGCCCCATTTGGAGTTTCTACTATTGTTCTATTCCCAGAGTTCGATTTCAAGTTCAACAGCTCAGAGTCTCCTGCTGTCCGTGAGGCGCTTGATTCTTACTGCAATGACCGAAGGCGATCATACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACGCCACTGAGACCCAAACTCGCATGCTGGACATTCTCGTTAGTGAAGCGATTGCTGCTTATGAGGGATTGCGGGAGTTTAAATTGAGGGATGAAACTTCGTTTTGTAATCTTATTGATGCACTTTATGAGGGATTGCGATTCGAGTACGAAGATTCATAA

Coding sequence (CDS)

ATGTCATCGACGGGGTCAAGTCCTTGGATAGCTGCCCCATTTGGAGTTTCTACTATTGTTCTATTCCCAGAGTTCGATTTCAAGTTCAACAGCTCAGAGTCTCCTGCTGTCCGTGAGGCGCTTGATTCTTACTGCAATGACCGAAGGCGATCATACGAGTTTTTCAACTGGGTTGAATCAGAATGTAAGTTCGATCACGCCACTGAGACCCAAACTCGCATGCTGGACATTCTCGTTAGTGAAGCGATTGCTGCTTATGAGGGATTGCGGGAGTTTAAATTGAGGGATGAAACTTCGTTTTGTAATCTTATTGATGCACTTTATGAGGGATTGCGATTCGAGTACGAAGATTCATAA

Protein sequence

MSSTGSSPWIAAPFGVSTIVLFPEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEAIAAYEGLREFKLRDETSFCNLIDALYEGLRFEYEDS
BLAST of CsaV3_7G032090 vs. NCBI nr
Match: KGN45238.1 (hypothetical protein Csa_7G432190 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 4.5e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 23  PEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEA 82
           PEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEA
Sbjct: 44  PEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEA 103

Query: 83  IAAYEGLREFKLRDETSFCNLIDALYEGLRFE 115
           IAAYEGLREFKLRDETSFCNLIDALYEGLRFE
Sbjct: 104 IAAYEGLREFKLRDETSFCNLIDALYEGLRFE 135

BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_008461152.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 7.3e-28
Identity = 78/146 (53.42%), Postives = 81/146 (55.48%), Query Frame = 0

Query: 14  FGVSTIVLFPEFDFKFNSSE---------SPAVREALDSYCNDRRRSYEFFNWVESECKF 73
           F   TI   PEFDFKFN+SE            VREALDSYCND +RSYEFFNWVESECKF
Sbjct: 18  FSTKTINPIPEFDFKFNTSERRPTHANFDPSTVREALDSYCNDWKRSYEFFNWVESECKF 77

Query: 74  DHATETQTRMLDI-----------------------------------------LVSEAI 110
           DH TET  RMLDI                                         LV+EAI
Sbjct: 78  DHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPFAPPDHTTFRILFKRYAAAHLVTEAI 137

BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_011659515.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucumis sativus] >KGN45236.1 hypothetical protein Csa_7G432170 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 78/146 (53.42%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 14  FGVSTIVLFPEFDFKFNSSESP---------AVREALDSYCNDRRRSYEFFNWVESECKF 73
           F    I   PEFDFKFN+SE            VREALDSYCND +RSYEFFNWVESECKF
Sbjct: 18  FSTKAISPIPEFDFKFNTSERRPTHTNFDPFTVREALDSYCNDWKRSYEFFNWVESECKF 77

Query: 74  DHATETQTRMLDI-----------------------------------------LVSEAI 110
           DH TET  RMLDI                                         LVSEAI
Sbjct: 78  DHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRYALAHLVSEAI 137

BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_022953157.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953158.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata] >XP_022953159.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 4.0e-26
Identity = 77/152 (50.66%), Postives = 79/152 (51.97%), Query Frame = 0

Query: 8   PWIAAPFGVSTIVLFPEFDFKFNSSES---------PAVREALDSYCNDRRRSYEFFNWV 67
           P  A  F   T     EF F FN+ E          P VREALDSYCND RRSYEFFNWV
Sbjct: 40  PAAAILFSTKTTNPISEFGFNFNTPEDRPTQTNFDPPTVREALDSYCNDWRRSYEFFNWV 99

Query: 68  ESECKFDHATETQTRMLDI----------------------------------------- 110
           ESECKFDH TET  RMLDI                                         
Sbjct: 100 ESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAH 159

BLAST of CsaV3_7G032090 vs. NCBI nr
Match: XP_022991827.1 (pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991828.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima] >XP_022991829.1 pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25
Identity = 77/152 (50.66%), Postives = 78/152 (51.32%), Query Frame = 0

Query: 8   PWIAAPFGVSTIVLFPEFDFKFNSSES---------PAVREALDSYCNDRRRSYEFFNWV 67
           P  A  F   T      F F FN+ E          P VREALDSYCND RRSYEFFNWV
Sbjct: 40  PAAAILFSTKTTNPISVFGFNFNTPEDRPTQTNFDPPTVREALDSYCNDWRRSYEFFNWV 99

Query: 68  ESECKFDHATETQTRMLDI----------------------------------------- 110
           ESECKFDH TET  RMLDI                                         
Sbjct: 100 ESECKFDHTTETYNRMLDILGKFFEFDLSWELIQRMLQSPFASPDHATFRIMFKRYASAH 159

BLAST of CsaV3_7G032090 vs. TAIR10
Match: AT1G80550.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 7.3e-14
Identity = 55/152 (36.18%), Postives = 67/152 (44.08%), Query Frame = 0

Query: 10  IAAPFGVSTIVLFP---EFDFKFNSSE--------SPAVREALDSYCNDRRRSYEFFNWV 69
           IA+P+ V  + + P     D KF S E           V EAL  Y ND +++ EFFNWV
Sbjct: 12  IASPYSVRLLSVKPISNVDDAKFRSQEEEDQSSYDQKTVCEALTCYSNDWQKALEFFNWV 71

Query: 70  ESECKFDHATETQTRMLDI----------------------------------------- 110
           E E  F H TET  R++DI                                         
Sbjct: 72  ERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAH 131

BLAST of CsaV3_7G032090 vs. Swiss-Prot
Match: sp|Q9M8M3|PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80550 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 55/152 (36.18%), Postives = 67/152 (44.08%), Query Frame = 0

Query: 10  IAAPFGVSTIVLFP---EFDFKFNSSE--------SPAVREALDSYCNDRRRSYEFFNWV 69
           IA+P+ V  + + P     D KF S E           V EAL  Y ND +++ EFFNWV
Sbjct: 12  IASPYSVRLLSVKPISNVDDAKFRSQEEEDQSSYDQKTVCEALTCYSNDWQKALEFFNWV 71

Query: 70  ESECKFDHATETQTRMLDI----------------------------------------- 110
           E E  F H TET  R++DI                                         
Sbjct: 72  ERESGFRHTTETFNRVIDILGKYFEFEISWALINRMIGNTESVPNHVTFRIVFKRYVTAH 131

BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A0A0K6U8|A0A0A0K6U8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432190 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.0e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 23  PEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEA 82
           PEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEA
Sbjct: 44  PEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDILVSEA 103

Query: 83  IAAYEGLREFKLRDETSFCNLIDALYEGLRFE 115
           IAAYEGLREFKLRDETSFCNLIDALYEGLRFE
Sbjct: 104 IAAYEGLREFKLRDETSFCNLIDALYEGLRFE 135

BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A1S3CFA1|A0A1S3CFA1_CUCME (pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103499823 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.8e-28
Identity = 78/146 (53.42%), Postives = 81/146 (55.48%), Query Frame = 0

Query: 14  FGVSTIVLFPEFDFKFNSSE---------SPAVREALDSYCNDRRRSYEFFNWVESECKF 73
           F   TI   PEFDFKFN+SE            VREALDSYCND +RSYEFFNWVESECKF
Sbjct: 18  FSTKTINPIPEFDFKFNTSERRPTHANFDPSTVREALDSYCNDWKRSYEFFNWVESECKF 77

Query: 74  DHATETQTRMLDI-----------------------------------------LVSEAI 110
           DH TET  RMLDI                                         LV+EAI
Sbjct: 78  DHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPFAPPDHTTFRILFKRYAAAHLVTEAI 137

BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A0A0KBR1|A0A0A0KBR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432170 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.2e-28
Identity = 78/146 (53.42%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 14  FGVSTIVLFPEFDFKFNSSESP---------AVREALDSYCNDRRRSYEFFNWVESECKF 73
           F    I   PEFDFKFN+SE            VREALDSYCND +RSYEFFNWVESECKF
Sbjct: 18  FSTKAISPIPEFDFKFNTSERRPTHTNFDPFTVREALDSYCNDWKRSYEFFNWVESECKF 77

Query: 74  DHATETQTRMLDI-----------------------------------------LVSEAI 110
           DH TET  RMLDI                                         LVSEAI
Sbjct: 78  DHTTETYNRMLDILGKFFEFDLSWVLINRMRQSPSASPDHATFRILFKRYALAHLVSEAI 137

BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A2P5BS69|A0A2P5BS69_PARAD (Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_214690 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 56/151 (37.09%), Postives = 67/151 (44.37%), Query Frame = 0

Query: 2   SSTGSSPWIAAPFGVSTIV--LFPEFDFKFNSSESPAVREALDSYCNDRRRSYEFFNWVE 61
           SS+ +  +   P    TI   L P+      S +   VRE L SYCND RR+ EFFNWVE
Sbjct: 30  SSSSTQSFSTKPISNHTIQVRLRPQSQSDSVSFDPNTVRETLSSYCNDWRRALEFFNWVE 89

Query: 62  SECKFDHATETQTRMLDI-----------------------------------------L 110
           +   F H TET  RMLDI                                         L
Sbjct: 90  THHHFQHTTETYNRMLDILGKFFEFELSWELIQRMRQNPVSNPDHTTFRVIFKRYVSAHL 149

BLAST of CsaV3_7G032090 vs. TrEMBL
Match: tr|A0A2P6QRD7|A0A2P6QRD7_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0394981 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 47/114 (41.23%), Postives = 55/114 (48.25%), Query Frame = 0

Query: 37  VREALDSYCNDRRRSYEFFNWVESECKFDHATETQTRMLDI------------------- 96
           VRE L SYCND +++ +FFNWVE++  F H TET  RMLDI                   
Sbjct: 60  VRETLSSYCNDWKKALDFFNWVETQYHFQHTTETHNRMLDILGKYFEFELSWDLVHKMKQ 119

Query: 97  ----------------------LVSEAIAAYEGLREFKLRDETSFCNLIDALYE 110
                                 LV EAI  Y  L EF L+DETS+CNLIDAL E
Sbjct: 120 NPSSVPDHTTFRIMFKRYVSAHLVKEAIDTYNKLDEFSLKDETSYCNLIDALCE 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45238.14.5e-46100.00hypothetical protein Csa_7G432190 [Cucumis sativus][more]
XP_008461152.17.3e-2853.42PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial ... [more]
XP_011659515.11.2e-2753.42PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial ... [more]
XP_022953157.14.0e-2650.66pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ... [more]
XP_022991827.11.2e-2550.66pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Cucurbita ... [more]
Match NameE-valueIdentityDescription
AT1G80550.17.3e-1436.18Pentatricopeptide repeat (PPR) superfamily protein[more]
Match NameE-valueIdentityDescription
sp|Q9M8M3|PP136_ARATH1.3e-1236.18Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0K6U8|A0A0A0K6U8_CUCSA3.0e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432190 PE=4 SV=1[more]
tr|A0A1S3CFA1|A0A1S3CFA1_CUCME4.8e-2853.42pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Cucumis ... [more]
tr|A0A0A0KBR1|A0A0A0KBR1_CUCSA8.2e-2853.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432170 PE=4 SV=1[more]
tr|A0A2P5BS69|A0A2P5BS69_PARAD4.4e-1337.09Pentatricopeptide repeat OS=Parasponia andersonii OX=3476 GN=PanWU01x14_214690 P... [more]
tr|A0A2P6QRD7|A0A2P6QRD7_ROSCH9.7e-1341.23Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0394981 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G032090.1CsaV3_7G032090.1mRNA